BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644772|ref|NP_206942.1| A/G-specific adenine
glycosylase (mutY) [Helicobacter pylori 26695]
(328 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1MUY|A Chain A, Catalytic Domain Of Muty From Escherich... 159 5e-40
pdb|1MUN| Catalytic Domain Of Muty From Escherichia Coli ... 157 2e-39
pdb|1KQJ|A Chain A, Crystal Structure Of A Mutant Of Muty C... 154 1e-38
pdb|1KEA|A Chain A, Structure Of A Thermostable Thymine-Dna... 96 7e-21
pdb|2ABK| Refinement Of The Native Structure Of Endonucle... 59 6e-10
pdb|1K96|A Chain A, Crystal Structure Of Calcium Bound Huma... 31 0.17
pdb|1K8U|A Chain A, Crystal Structure Of Calcium-Free (Or A... 31 0.17
pdb|1FA0|B Chain B, Structure Of Yeast Poly(A) Polymerase B... 28 1.4
pdb|1AKN| Structure Of Bile-Salt Activated Lipase 25 9.3
pdb|1QI1|A Chain A, Ternary Complex Of An Nadp Dependent Al... 25 9.3
pdb|1AQL|A Chain A, Crystal Structure Of Bovine Bile-Salt A... 25 9.3
pdb|1EUH|A Chain A, Apo Form Of A Nadp Dependent Aldehyde D... 25 9.3
>pdb|1MUY|A Chain A, Catalytic Domain Of Muty From Escherichia Coli
Length = 225
Score = 159 bits (401), Expect = 5e-40
Identities = 87/207 (42%), Positives = 129/207 (62%), Gaps = 15/207 (7%)
Query: 8 LLKWYEEFGRKGLPFRNLKGINAPYEVYISEVMSQQTQINTVIERFYSPFLEAFPTLKDL 67
+L WY+++GRK LP++ K PY+V++SEVM QQTQ+ TVI ++ F+ FPT+ DL
Sbjct: 10 VLDWYDKYGRKTLPWQIDK---TPYKVWLSEVMLQQTQVATVIP-YFERFMARFPTVTDL 65
Query: 68 ANAQLEEVLLLWRGLGYYSRAKNLKKSAEICVKEHHSQLPNDYQSLLKLPGIGAYTANAI 127
ANA L+EVL LW GLGYY+RA+NL K+A+ H + P ++ + LPG+G TA AI
Sbjct: 66 ANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAI 125
Query: 128 LCFGFREKRACVDANIKRVLLRLFGLDPNIHAKDLQIKANEFLNLNESF-------NHNQ 180
L + +D N+KRVL R + + K+++ N+ +L+E NQ
Sbjct: 126 LSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVE---NKLWSLSEQVTPAVGVERFNQ 182
Query: 181 ALIDLGALICS-PKPKCAICPFNPYCL 206
A++DLGA+IC+ KPKC++CP C+
Sbjct: 183 AMMDLGAMICTRSKPKCSLCPLQNGCI 209
>pdb|1MUN| Catalytic Domain Of Muty From Escherichia Coli D138n Mutant
pdb|1MUD|A Chain A, Catalytic Domain Of Muty From Escherichia Coli, D138n
Mutant Complexed To Adenine
Length = 225
Score = 157 bits (396), Expect = 2e-39
Identities = 86/207 (41%), Positives = 129/207 (61%), Gaps = 15/207 (7%)
Query: 8 LLKWYEEFGRKGLPFRNLKGINAPYEVYISEVMSQQTQINTVIERFYSPFLEAFPTLKDL 67
+L WY+++GRK LP++ K PY+V++SEVM QQTQ+ TVI ++ F+ FPT+ DL
Sbjct: 10 VLDWYDKYGRKTLPWQIDK---TPYKVWLSEVMLQQTQVATVIP-YFERFMARFPTVTDL 65
Query: 68 ANAQLEEVLLLWRGLGYYSRAKNLKKSAEICVKEHHSQLPNDYQSLLKLPGIGAYTANAI 127
ANA L+EVL LW GLGYY+RA+NL K+A+ H + P ++ + LPG+G TA AI
Sbjct: 66 ANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAI 125
Query: 128 LCFGFREKRACVDANIKRVLLRLFGLDPNIHAKDLQIKANEFLNLNESF-------NHNQ 180
L + ++ N+KRVL R + + K+++ N+ +L+E NQ
Sbjct: 126 LSLSLGKHFPILNGNVKRVLARCYAVSGWPGKKEVE---NKLWSLSEQVTPAVGVERFNQ 182
Query: 181 ALIDLGALICS-PKPKCAICPFNPYCL 206
A++DLGA+IC+ KPKC++CP C+
Sbjct: 183 AMMDLGAMICTRSKPKCSLCPLQNGCI 209
>pdb|1KQJ|A Chain A, Crystal Structure Of A Mutant Of Muty Catalytic Domain
Length = 225
Score = 154 bits (389), Expect = 1e-38
Identities = 86/207 (41%), Positives = 128/207 (61%), Gaps = 15/207 (7%)
Query: 8 LLKWYEEFGRKGLPFRNLKGINAPYEVYISEVMSQQTQINTVIERFYSPFLEAFPTLKDL 67
+L WY+++GRK LP++ K PY+V++SEVM QQTQ+ TVI ++ F+ FPT+ DL
Sbjct: 10 VLDWYDKYGRKTLPWQIDK---TPYKVWLSEVMLQQTQVATVIP-YFERFMARFPTVTDL 65
Query: 68 ANAQLEEVLLLWRGLGYYSRAKNLKKSAEICVKEHHSQLPNDYQSLLKLPGIGAYTANAI 127
ANA L+EVL LW GLGYY+RA+NL K+A+ H + P ++ + LPG+G TA AI
Sbjct: 66 ANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAI 125
Query: 128 LCFGFREKRACVDANIKRVLLRLFGLDPNIHAKDLQIKANEFLNLNESF-------NHNQ 180
L + +D N+KRVL R + + K+++ N+ +L+E NQ
Sbjct: 126 LSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVE---NKLWSLSEQVTPAVGVERFNQ 182
Query: 181 ALIDLGALICS-PKPKCAICPFNPYCL 206
A++DLGA+IC+ KPK ++CP C+
Sbjct: 183 AMMDLGAMICTRSKPKHSLCPLQNGCI 209
>pdb|1KEA|A Chain A, Structure Of A Thermostable Thymine-Dna Glycosylase
Length = 221
Score = 95.5 bits (236), Expect = 7e-21
Identities = 58/194 (29%), Positives = 103/194 (52%), Gaps = 9/194 (4%)
Query: 17 RKGLPFRNLKGINAPYEVYISEVMSQQTQINTVIERFYSPFLEAFPTLKDLANAQLEEVL 76
R+ P+R+ + PY + I+E++ ++T V ++ Y F + +D+ E+
Sbjct: 24 RRDFPWRHTRD---PYVILITEILLRRTTAGHV-KKIYDKFFVKYKCFEDILKTPKSEIA 79
Query: 77 LLWRGLGYYS-RAKNLKKSAEICVKEHHSQLPNDYQSLLKLPGIGAYTANAILCFGFREK 135
+ +G + RA+ LK+ A + + ++ ++P + +++L LPG+G YT A++C F +K
Sbjct: 80 KDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLAFGKK 139
Query: 136 RACVDANIKRVLLRLFG---LDPNIHAKDLQIKANEFLNLNESFNHNQALIDLGALICSP 192
A VDAN RV+ R FG + N + K L A + + + N L+D A+IC+P
Sbjct: 140 AAMVDANFVRVINRYFGGSYENLNYNHKALWELAETLVPGGKCRDFNLGLMDFSAIICAP 199
Query: 193 -KPKCAICPFNPYC 205
KPKC C + C
Sbjct: 200 RKPKCEKCGMSKLC 213
>pdb|2ABK| Refinement Of The Native Structure Of Endonuclease Iii To A
Resolution Of 1.85 Angstrom
Length = 211
Score = 59.3 bits (142), Expect = 6e-10
Identities = 49/189 (25%), Positives = 89/189 (46%), Gaps = 10/189 (5%)
Query: 29 NAPYEVYISEVMSQQT---QINTVIERFYSPFLEAFPTLKDLANAQLEEVLLLWRGLGYY 85
++P+E+ I+ ++S Q +N + Y P + +L +E V + +G Y
Sbjct: 27 SSPFELLIAVLLSAQATDVSVNKATAKLY-PVANTPAAMLELG---VEGVKTYIKTIGLY 82
Query: 86 -SRAKNLKKSAEICVKEHHSQLPNDYQSLLKLPGIGAYTANAILCFGFREKRACVDANIK 144
S+A+N+ K+ I +++H+ ++P D +L LPG+G TAN +L F VD +I
Sbjct: 83 NSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIF 142
Query: 145 RVLLRLFGLDPNIHAKDLQIKANEFLNLNESFNHNQALIDLGALIC-SPKPKCAICPFNP 203
RV R P + + ++ K + + + + LI G C + KP+C C
Sbjct: 143 RVCNRT-QFAPGKNVEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIED 201
Query: 204 YCLGKNHLE 212
C K ++
Sbjct: 202 LCEYKEKVD 210
>pdb|1K96|A Chain A, Crystal Structure Of Calcium Bound Human S100a6
pdb|1K9K|A Chain A, Crystal Structure Of Calcium Bound Human S100a6
pdb|1K9K|B Chain B, Crystal Structure Of Calcium Bound Human S100a6
pdb|1K9P|A Chain A, Crystal Structure Of Calcium Free (Or Apo) Human S100a6
Length = 90
Score = 31.2 bits (69), Expect = 0.17
Identities = 21/62 (33%), Positives = 35/62 (55%), Gaps = 8/62 (12%)
Query: 212 EKHTLKKKQ--EIIQEERYLGVVIQNNQIALEKIEQKLYLGMHHFPDLKENLECKLPFLG 269
+KHTL KK+ E+IQ+E +G +Q+ +IA +L + D + N + + FLG
Sbjct: 25 DKHTLSKKELKELIQKELTIGSKLQDAEIA------RLMEDLDRNKDQEVNFQEYVTFLG 78
Query: 270 AI 271
A+
Sbjct: 79 AL 80
>pdb|1K8U|A Chain A, Crystal Structure Of Calcium-Free (Or Apo) Human S100a6;
Cys3met Mutant (Selenomethionine Derivative)
Length = 90
Score = 31.2 bits (69), Expect = 0.17
Identities = 21/62 (33%), Positives = 35/62 (55%), Gaps = 8/62 (12%)
Query: 212 EKHTLKKKQ--EIIQEERYLGVVIQNNQIALEKIEQKLYLGMHHFPDLKENLECKLPFLG 269
+KHTL KK+ E+IQ+E +G +Q+ +IA +L + D + N + + FLG
Sbjct: 25 DKHTLSKKELKELIQKELTIGSKLQDAEIA------RLXEDLDRNKDQEVNFQEYVTFLG 78
Query: 270 AI 271
A+
Sbjct: 79 AL 80
>pdb|1FA0|B Chain B, Structure Of Yeast Poly(A) Polymerase Bound To Manganate
And 3'-Datp
pdb|1FA0|A Chain A, Structure Of Yeast Poly(A) Polymerase Bound To Manganate
And 3'-Datp
Length = 537
Score = 28.1 bits (61), Expect = 1.4
Identities = 18/51 (35%), Positives = 25/51 (48%), Gaps = 4/51 (7%)
Query: 133 REKRACVDANIKRVLLRLFGLDPNIHAK----DLQIKANEFLNLNESFNHN 179
+E+ + DA + GLD NI K D+ I EF+NL SFN +
Sbjct: 448 KEEESIKDAPKAYLSTMYIGLDFNIENKKEKVDIHIPCTEFVNLCRSFNED 498
>pdb|1AKN| Structure Of Bile-Salt Activated Lipase
Length = 579
Score = 25.4 bits (54), Expect = 9.3
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 23 RNLKGINAPYEVYI---SEVMSQQTQINTVIE 51
+ L+G NA YEVY ++ SQ+T+ T+++
Sbjct: 355 KGLRGANATYEVYTEPWAQDSSQETRKKTMVD 386
>pdb|1QI1|A Chain A, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|B Chain B, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|C Chain C, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|D Chain D, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
Length = 475
Score = 25.4 bits (54), Expect = 9.3
Identities = 12/36 (33%), Positives = 18/36 (49%)
Query: 66 DLANAQLEEVLLLWRGLGYYSRAKNLKKSAEICVKE 101
D A ++ WR L Y RA L K A+I +++
Sbjct: 43 DYVYASAKKAQPAWRALSYIERAAYLHKVADILMRD 78
>pdb|1AQL|A Chain A, Crystal Structure Of Bovine Bile-Salt Activated Lipase
Complexed With Taurocholate
pdb|1AQL|B Chain B, Crystal Structure Of Bovine Bile-Salt Activated Lipase
Complexed With Taurocholate
Length = 532
Score = 25.4 bits (54), Expect = 9.3
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 23 RNLKGINAPYEVYI---SEVMSQQTQINTVIE 51
+ L+G NA YEVY ++ SQ+T+ T+++
Sbjct: 355 KGLRGANATYEVYTEPWAQDSSQETRKKTMVD 386
>pdb|1EUH|A Chain A, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1EUH|B Chain B, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1EUH|C Chain C, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1EUH|D Chain D, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1QI6|A Chain A, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|1QI6|B Chain B, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|1QI6|C Chain C, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|1QI6|D Chain D, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|2EUH|A Chain A, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|2EUH|B Chain B, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|2EUH|C Chain C, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|2EUH|D Chain D, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
Length = 475
Score = 25.4 bits (54), Expect = 9.3
Identities = 12/36 (33%), Positives = 18/36 (49%)
Query: 66 DLANAQLEEVLLLWRGLGYYSRAKNLKKSAEICVKE 101
D A ++ WR L Y RA L K A+I +++
Sbjct: 43 DYVYASAKKAQPAWRALSYIERAAYLHKVADILMRD 78
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.140 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,876,159
Number of Sequences: 13198
Number of extensions: 73803
Number of successful extensions: 166
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 13
length of query: 328
length of database: 2,899,336
effective HSP length: 89
effective length of query: 239
effective length of database: 1,724,714
effective search space: 412206646
effective search space used: 412206646
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)