BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646023|ref|NP_208204.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(148 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1A8R|A Chain A, Gtp Cyclohydrolase I (H112s Mutant) In ... 26 2.2
pdb|1TMO| Trimethylamine N-Oxide Reductase From Shewanell... 26 2.2
pdb|1FBX|A Chain A, Crystal Structure Of Zinc-Containing E.... 25 2.8
pdb|1DT9|A Chain A, The Crystal Structure Of Human Eukaryot... 25 3.7
pdb|1QIU|A Chain A, A Triple Beta-Spiral In The Adenovirus ... 25 4.8
pdb|1QHV|A Chain A, Human Adenovirus Serotype 2 Fibre Head 25 4.8
pdb|1GES|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Nad... 24 8.2
pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain... 24 8.2
pdb|1QO0|B Chain B, Amide Receptor Of The Amidase Operon Of... 24 8.2
>pdb|1A8R|A Chain A, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|B Chain B, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|C Chain C, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|D Chain D, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|E Chain E, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|F Chain F, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|G Chain G, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|H Chain H, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|I Chain I, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|J Chain J, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|K Chain K, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|L Chain L, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|M Chain M, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|N Chain N, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|O Chain O, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
Length = 221
Score = 25.8 bits (55), Expect = 2.2
Identities = 17/72 (23%), Positives = 28/72 (38%)
Query: 35 LDPLITLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESC 94
+D ++T+ TS C G + YIPKD ++ + + + E
Sbjct: 95 VDEMVTVRDITLTSTCESHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERL 154
Query: 95 INTILLDLVRLL 106
IL+ L LL
Sbjct: 155 TQQILIALQTLL 166
>pdb|1TMO| Trimethylamine N-Oxide Reductase From Shewanella Massilia
Length = 829
Score = 25.8 bits (55), Expect = 2.2
Identities = 13/43 (30%), Positives = 22/43 (50%)
Query: 98 ILLDLVRLLEPKYLEVYGDFASRGGIAIKPFVNYAIKEYQDFK 140
I+L E ++VYG +A+RG +A++ V DF+
Sbjct: 511 IVLPACTTYERNDIDVYGAYANRGILAMQKMVEPLFDSLSDFE 553
>pdb|1FBX|A Chain A, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|B Chain B, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|C Chain C, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|D Chain D, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|E Chain E, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|F Chain F, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|G Chain G, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|H Chain H, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|I Chain I, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|J Chain J, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|K Chain K, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|L Chain L, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|M Chain M, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|N Chain N, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|O Chain O, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1GTP|A Chain A, Gtp Cyclohydrolase I
pdb|1GTP|B Chain B, Gtp Cyclohydrolase I
pdb|1GTP|C Chain C, Gtp Cyclohydrolase I
pdb|1GTP|D Chain D, Gtp Cyclohydrolase I
pdb|1GTP|E Chain E, Gtp Cyclohydrolase I
pdb|1GTP|F Chain F, Gtp Cyclohydrolase I
pdb|1GTP|G Chain G, Gtp Cyclohydrolase I
pdb|1GTP|H Chain H, Gtp Cyclohydrolase I
pdb|1GTP|I Chain I, Gtp Cyclohydrolase I
pdb|1GTP|J Chain J, Gtp Cyclohydrolase I
pdb|1GTP|K Chain K, Gtp Cyclohydrolase I
pdb|1GTP|L Chain L, Gtp Cyclohydrolase I
pdb|1GTP|M Chain M, Gtp Cyclohydrolase I
pdb|1GTP|N Chain N, Gtp Cyclohydrolase I
pdb|1GTP|O Chain O, Gtp Cyclohydrolase I
pdb|1GTP|P Chain P, Gtp Cyclohydrolase I
pdb|1GTP|Q Chain Q, Gtp Cyclohydrolase I
pdb|1GTP|R Chain R, Gtp Cyclohydrolase I
pdb|1GTP|S Chain S, Gtp Cyclohydrolase I
pdb|1GTP|T Chain T, Gtp Cyclohydrolase I
Length = 221
Score = 25.4 bits (54), Expect = 2.8
Identities = 17/72 (23%), Positives = 28/72 (38%)
Query: 35 LDPLITLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESC 94
+D ++T+ TS C G + YIPKD ++ + + + E
Sbjct: 95 VDEMVTVRDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERL 154
Query: 95 INTILLDLVRLL 106
IL+ L LL
Sbjct: 155 TQQILIALQTLL 166
>pdb|1DT9|A Chain A, The Crystal Structure Of Human Eukaryotic Release Factor
Erf1-Mechanism Of Stop Codon Recognition And
Peptidyl-Trna Hydrolysis
Length = 437
Score = 25.0 bits (53), Expect = 3.7
Identities = 14/44 (31%), Positives = 26/44 (58%), Gaps = 1/44 (2%)
Query: 69 DKMVESKSLKLYLFSYRNHGSFHESC-INTILLDLVRLLEPKYL 111
D+ ++SK LKL SY F+++ ++T +L V+ ++ K L
Sbjct: 243 DQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKL 286
>pdb|1QIU|A Chain A, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
pdb|1QIU|B Chain B, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
pdb|1QIU|C Chain C, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
pdb|1QIU|D Chain D, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
pdb|1QIU|E Chain E, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
pdb|1QIU|F Chain F, A Triple Beta-Spiral In The Adenovirus Fibre Shaft Reveals
A New Structural Motif For Biological Fibres
Length = 264
Score = 24.6 bits (52), Expect = 4.8
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 61 IFIRYIPKDKMVESKSLKLYLFSYRNHGS 89
IF+R+ ++E+ SLK + +++RN S
Sbjct: 139 IFLRFDQNGVLMENSSLKKHYWNFRNGNS 167
>pdb|1QHV|A Chain A, Human Adenovirus Serotype 2 Fibre Head
Length = 195
Score = 24.6 bits (52), Expect = 4.8
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 61 IFIRYIPKDKMVESKSLKLYLFSYRNHGS 89
IF+R+ ++E+ SLK + +++RN S
Sbjct: 70 IFLRFDQNGVLMENSSLKKHYWNFRNGNS 98
>pdb|1GES|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Nad Mutant With Ala
179 Replaced By Gly, Ala 183 By Gly, Val 197 By Glu, Arg
198 By Met, Lys 199 By Phe, His 200 By Asp, And Arg 204
By Phe (A179g,A183g,V197e,R198m,K199f,H200d,R204p)
Complexed With Nad
pdb|1GEU|B Chain B, Glutathione Reductase (E.C.1.6.4.2) Nad Mutant With Ala
179 Replaced By Gly, Ala 183 By Gly, Val 197 By Glu, Arg
198 By Met, Lys 199 By Phe, His 200 By Asp, And Arg 204
By Phe (A179g,A183g,V197e,R198m,K199f,H200d,R204p)
Complexed With Nad And Fad
pdb|1GES|A Chain A, Glutathione Reductase (E.C.1.6.4.2) Nad Mutant With Ala
179 Replaced By Gly, Ala 183 By Gly, Val 197 By Glu, Arg
198 By Met, Lys 199 By Phe, His 200 By Asp, And Arg 204
By Phe (A179g,A183g,V197e,R198m,K199f,H200d,R204p)
Complexed With Nad
pdb|1GEU|A Chain A, Glutathione Reductase (E.C.1.6.4.2) Nad Mutant With Ala
179 Replaced By Gly, Ala 183 By Gly, Val 197 By Glu, Arg
198 By Met, Lys 199 By Phe, His 200 By Asp, And Arg 204
By Phe (A179g,A183g,V197e,R198m,K199f,H200d,R204p)
Complexed With Nad And Fad
Length = 450
Score = 23.9 bits (50), Expect = 8.2
Identities = 13/34 (38%), Positives = 17/34 (49%), Gaps = 8/34 (23%)
Query: 7 LKSLGAKTPYIFEYNSQLLEAFPNPNPNLDPLIT 40
+ LGAKT L E F P P+ DP+I+
Sbjct: 186 INGLGAKT--------HLFEMFDAPLPSFDPMIS 211
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin
Length = 424
Score = 23.9 bits (50), Expect = 8.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 2 TPELNLKSLGAKTPY 16
TPELNL KTPY
Sbjct: 128 TPELNLDQFHDKTPY 142
>pdb|1QO0|B Chain B, Amide Receptor Of The Amidase Operon Of Pseudomonas
Aeruginosa (Amic) Complexed With The Negative Regulator
Amir.
pdb|1QO0|A Chain A, Amide Receptor Of The Amidase Operon Of Pseudomonas
Aeruginosa (Amic) Complexed With The Negative Regulator
Amir.
pdb|1PEA| Amide ReceptorNEGATIVE REGULATOR OF THE AMIDASE OPERON OF
Pseudomonas Aeruginosa (Amic) Complexed With Acetamide
Length = 385
Score = 23.9 bits (50), Expect = 8.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 14 TPYI-FEYNSQLLEAFPNPNPNLDPL 38
TPY FEY+ ++ P PN N PL
Sbjct: 106 TPYEGFEYSPNIVYGGPAPNQNSAPL 131
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.141 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 892,274
Number of Sequences: 13198
Number of extensions: 34908
Number of successful extensions: 84
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 9
length of query: 148
length of database: 2,899,336
effective HSP length: 80
effective length of query: 68
effective length of database: 1,843,496
effective search space: 125357728
effective search space used: 125357728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)