BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646024|ref|NP_208205.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(113 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crysta... 25 2.1
pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copp... 25 2.1
pdb|1FVP|A Chain A, Flavoprotein 390 >gi|1311361|pdb|1FVP|B... 25 2.7
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergill... 24 4.6
pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxyp... 24 4.6
pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase C... 23 7.8
pdb|1IGR|A Chain A, Type 1 Insulin-Like Growth Factor Recep... 23 7.8
pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus 23 7.8
>pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crystal Structure
Length = 681
Score = 25.0 bits (53), Expect = 2.1
Identities = 19/67 (28%), Positives = 31/67 (45%), Gaps = 16/67 (23%)
Query: 39 TTLANKHALSLLDALKNTLKPLGEVFYQIDESNEEWIILDLGDLMIHLFTEECRKK-FDL 97
T + + LD L LKPLG E+ E+I + L +EC ++ F+
Sbjct: 285 TAKSTSRVAAFLDDLSQKLKPLG-------EAEREFI--------LSLKKKECEERGFEY 329
Query: 98 EGFLNAY 104
+G +NA+
Sbjct: 330 DGKINAW 336
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
Length = 488
Score = 25.0 bits (53), Expect = 2.1
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 72 EEWIILDLGDLMIHLF 87
E W+I +GD+M+H F
Sbjct: 402 ERWVISGVGDMMLHPF 417
>pdb|1FVP|A Chain A, Flavoprotein 390
pdb|1FVP|B Chain B, Flavoprotein 390
Length = 231
Score = 24.6 bits (52), Expect = 2.7
Identities = 22/81 (27%), Positives = 39/81 (47%), Gaps = 11/81 (13%)
Query: 1 MNQRIETITALLDEKKAFDITHIDLSKTPYLV----EDVIIATTLANKHALSLLDALKNT 56
MN +ET+ + ++ +D+ +ID YLV ED +A + L +L +NT
Sbjct: 25 MNNALETLRIIDEDTSIYDVINID---DHYLVKKDSEDKKLAPFITLGEKLYVLATSENT 81
Query: 57 L----KPLGEVFYQIDESNEE 73
+ K + ++ D+ NEE
Sbjct: 82 VDIAAKYALPLVFKWDDINEE 102
>pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1BK0| Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1BLZ| Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe-No
Complex)
Length = 331
Score = 23.9 bits (50), Expect = 4.6
Identities = 11/46 (23%), Positives = 23/46 (49%)
Query: 65 YQIDESNEEWIILDLGDLMIHLFTEECRKKFDLEGFLNAYKRGLPY 110
YQ E+++ +++ G M HL + ++NA ++ LP+
Sbjct: 239 YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQSLPF 284
>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
pdb|1FON|B Chain B, Crystal Structure Of Bovine Procarboxypeptidase A-S6
Subunit Iii, A Highly Structured Truncated Zymogen E
Length = 240
Score = 23.9 bits (50), Expect = 4.6
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 60 LGEVFYQIDESNEEWIILDLGDLMIH-LFTEEC 91
LGE + E +E+ I ++ GDL +H L+ C
Sbjct: 55 LGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNC 87
>pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
pdb|1GL9|C Chain C, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
Length = 1054
Score = 23.1 bits (48), Expect = 7.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 48 SLLDALKNTLKPLGEVFYQIDESNEEWIILDLGDLMIHLFTEECRKKFDL 97
++L A KN K L + + D + W+ G LM+ T + KK +L
Sbjct: 186 AILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAEL 235
>pdb|1IGR|A Chain A, Type 1 Insulin-Like Growth Factor Receptor (Domains 1-3)
Length = 478
Score = 23.1 bits (48), Expect = 7.8
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 31 LVEDVIIATTLANKHALSLLDALKNTLKPLGE-------VFYQIDESN 71
L+E V + + HAL L LKN LGE FY +D N
Sbjct: 350 LIEVVTGYVKIRHSHALVSLSFLKNLRLILGEEQLEGNYSFYVLDNQN 397
>pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus
Length = 1054
Score = 23.1 bits (48), Expect = 7.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 48 SLLDALKNTLKPLGEVFYQIDESNEEWIILDLGDLMIHLFTEECRKKFDL 97
++L A KN K L + + D + W+ G LM+ T + KK +L
Sbjct: 186 AILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAEL 235
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.139 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 615,583
Number of Sequences: 13198
Number of extensions: 21613
Number of successful extensions: 58
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 8
length of query: 113
length of database: 2,899,336
effective HSP length: 76
effective length of query: 37
effective length of database: 1,896,288
effective search space: 70162656
effective search space used: 70162656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)