BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646028|ref|NP_208210.1| flagellar biosynthetic
protein (fliQ) [Helicobacter pylori 26695]
         (88 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1MC8|A  Chain A, Crystal Structure Of Flap Endonuclease-...    26  0.85
pdb|1B43|A  Chain A, Fen-1 From P. Furiosus >gi|6980605|pdb|...    25  1.1

>pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
           Pyrococcus Horikoshii
 pdb|1MC8|B Chain B, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From
           Pyrococcus Horikoshii
          Length = 343

 Score = 25.8 bits (55), Expect = 0.85
 Identities = 10/29 (34%), Positives = 18/29 (61%)

Query: 38  QATTQINEMTLSFVPKILAVIGVLILTMP 66
           Q  T++NEM +    K+L ++G+ I+  P
Sbjct: 122 QRATKVNEMLIEDAKKLLQLMGIPIIQAP 150



>pdb|1B43|A Chain A, Fen-1 From P. Furiosus
 pdb|1B43|B Chain B, Fen-1 From P. Furiosus
          Length = 340

 Score = 25.4 bits (54), Expect = 1.1
 Identities = 10/29 (34%), Positives = 18/29 (61%)

Query: 38  QATTQINEMTLSFVPKILAVIGVLILTMP 66
           Q  T++NEM +    K+L ++G+ I+  P
Sbjct: 122 QRATRVNEMLIEDAKKLLELMGIPIVQAP 150



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.328    0.142    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 375,004
Number of Sequences: 13198
Number of extensions: 10947
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 2
length of query: 88
length of database: 2,899,336
effective HSP length: 64
effective length of query: 24
effective length of database: 2,054,664
effective search space: 49311936
effective search space used: 49311936
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)