BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646029|ref|NP_208211.1| flagellar export protein
ATP synthase (fliI) [Helicobacter pylori 26695]
(434 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1MAB|B Chain B, Rat Liver F1-Atpase 164 2e-41
pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Coval... 160 3e-40
pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Coval... 160 3e-40
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (... 160 3e-40
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd (Dic... 158 1e-39
pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Fre... 153 4e-38
pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1... 140 2e-34
pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Fre... 137 2e-33
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexe... 122 6e-29
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd (Dic... 122 6e-29
pdb|1MAB|A Chain A, Rat Liver F1-Atpase 121 2e-28
pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1... 114 2e-26
pdb|1GEQ|B Chain B, Entropic Stabilization Of The Tryptopha... 28 2.0
pdb|1HBN|B Chain B, Methyl-Coenzyme M Reductase >gi|1582679... 28 2.0
pdb|1MN2| Manganese Peroxidase Substrate Binding Site Mut... 28 2.0
pdb|1MN1| Manganese Peroxidase Substrate Binding Site Mut... 28 2.0
pdb|1MNP| Manganese Peroxidase 28 2.6
pdb|1BFD| Benzoylformate Decarboxylase From Pseudomonas P... 28 2.6
pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free ... 27 5.9
pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformati... 27 5.9
pdb|1G0O|C Chain C, Structure Of Trihydroxynaphthalene Redu... 27 5.9
pdb|1AQT| Epsilon Subunit Of F1f0-Atp Synthase From Esche... 26 7.7
pdb|1BSH|A Chain A, Solution Structure Of The Epsilon Subun... 26 7.7
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
Length = 479
Score = 164 bits (414), Expect = 2e-41
Identities = 119/361 (32%), Positives = 185/361 (50%), Gaps = 16/361 (4%)
Query: 75 EGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGALDYERLAPVITTPIAPLKR 134
EG G KVL + PVG LGR++N +G+ ID +G + ++ AP+ ++
Sbjct: 67 EGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFIEM 126
Query: 135 GLIDEIFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTL-MGMITRGCLA--PIKVIALI 191
+ EI G+K +D L KG K+G+F G+GVGK+ L M +I A V A +
Sbjct: 127 SVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 186
Query: 192 GERGRE----IPEFIEK---NLKGDLSSCVLVVATSDDSPLMRKYGAFCAMSVAEYFKNQ 244
GER RE E IE NLK S LV ++ P R A ++VAEYF++Q
Sbjct: 187 GERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 246
Query: 245 -GLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGSIT 303
G DVL +D++ RF A E+ LG P++ GY P+ + + + ER KGSIT
Sbjct: 247 EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI-TTTKKGSIT 305
Query: 304 AFFSVLVEGDDLSDPIADQTRSILDGHIVLSRELTDYGIYPPINILNSASRVA-KDIISE 362
+ ++ V DDL+DP T + LD VLSR + + GIYP ++ L+S SR+ +I+
Sbjct: 306 SVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGS 365
Query: 363 SQNLCARKFRRLYALLKENEMLIRI-GSYQMGNDKELDEAIKKKALMEQFLAQDENALQP 421
AR +++ K + +I I G ++ + +L + + +++FL+Q +
Sbjct: 366 EHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKL--TVSRARKIQRFLSQPFQVAEV 423
Query: 422 F 422
F
Sbjct: 424 F 424
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 160 bits (405), Expect = 3e-40
Identities = 118/361 (32%), Positives = 184/361 (50%), Gaps = 16/361 (4%)
Query: 75 EGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGALDYERLAPVITTPIAPLKR 134
EG G KVL + PVG LGR++N +G+ ID +G + ++ A + ++
Sbjct: 71 EGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEM 130
Query: 135 GLIDEIFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTL-MGMITRGCLA--PIKVIALI 191
+ EI G+K +D L KG K+G+F G+GVGK+ L M +I A V A +
Sbjct: 131 SVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 190
Query: 192 GERGRE----IPEFIEK---NLKGDLSSCVLVVATSDDSPLMRKYGAFCAMSVAEYFKNQ 244
GER RE E IE NLK S LV ++ P R A ++VAEYF++Q
Sbjct: 191 GERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 250
Query: 245 -GLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGSIT 303
G DVL +D++ RF A E+ LG P++ GY P+ + + + ER KGSIT
Sbjct: 251 EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI-TTTKKGSIT 309
Query: 304 AFFSVLVEGDDLSDPIADQTRSILDGHIVLSRELTDYGIYPPINILNSASRVA-KDIISE 362
+ ++ V DDL+DP T + LD VLSR + + GIYP ++ L+S SR+ +I+
Sbjct: 310 SVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGS 369
Query: 363 SQNLCARKFRRLYALLKENEMLIRI-GSYQMGNDKELDEAIKKKALMEQFLAQDENALQP 421
AR +++ K + +I I G ++ + +L + + +++FL+Q +
Sbjct: 370 EHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKL--TVSRARKIQRFLSQPFQVAEV 427
Query: 422 F 422
F
Sbjct: 428 F 428
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 160 bits (405), Expect = 3e-40
Identities = 118/361 (32%), Positives = 184/361 (50%), Gaps = 16/361 (4%)
Query: 75 EGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGALDYERLAPVITTPIAPLKR 134
EG G KVL + PVG LGR++N +G+ ID +G + ++ A + ++
Sbjct: 71 EGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEM 130
Query: 135 GLIDEIFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTL-MGMITRGCLA--PIKVIALI 191
+ EI G+K +D L KG K+G+F G+GVGK+ L M +I A V A +
Sbjct: 131 SVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 190
Query: 192 GERGRE----IPEFIEK---NLKGDLSSCVLVVATSDDSPLMRKYGAFCAMSVAEYFKNQ 244
GER RE E IE NLK S LV ++ P R A ++VAEYF++Q
Sbjct: 191 GERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 250
Query: 245 -GLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGSIT 303
G DVL +D++ RF A E+ LG P++ GY P+ + + + ER KGSIT
Sbjct: 251 EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI-TTTKKGSIT 309
Query: 304 AFFSVLVEGDDLSDPIADQTRSILDGHIVLSRELTDYGIYPPINILNSASRVA-KDIISE 362
+ ++ V DDL+DP T + LD VLSR + + GIYP ++ L+S SR+ +I+
Sbjct: 310 SVQAIXVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGS 369
Query: 363 SQNLCARKFRRLYALLKENEMLIRI-GSYQMGNDKELDEAIKKKALMEQFLAQDENALQP 421
AR +++ K + +I I G ++ + +L + + +++FL+Q +
Sbjct: 370 EHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKL--TVSRARKIQRFLSQPFQVAEV 427
Query: 422 F 422
F
Sbjct: 428 F 428
>pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
Length = 482
Score = 160 bits (405), Expect = 3e-40
Identities = 118/361 (32%), Positives = 184/361 (50%), Gaps = 16/361 (4%)
Query: 75 EGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGALDYERLAPVITTPIAPLKR 134
EG G KVL + PVG LGR++N +G+ ID +G + ++ A + ++
Sbjct: 71 EGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEM 130
Query: 135 GLIDEIFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTL-MGMITRGCLA--PIKVIALI 191
+ EI G+K +D L KG K+G+F G+GVGK+ L M +I A V A +
Sbjct: 131 SVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 190
Query: 192 GERGRE----IPEFIEK---NLKGDLSSCVLVVATSDDSPLMRKYGAFCAMSVAEYFKNQ 244
GER RE E IE NLK S LV ++ P R A ++VAEYF++Q
Sbjct: 191 GERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 250
Query: 245 -GLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGSIT 303
G DVL +D++ RF A E+ LG P++ GY P+ + + + ER KGSIT
Sbjct: 251 EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI-TTTKKGSIT 309
Query: 304 AFFSVLVEGDDLSDPIADQTRSILDGHIVLSRELTDYGIYPPINILNSASRVA-KDIISE 362
+ ++ V DDL+DP T + LD VLSR + + GIYP ++ L+S SR+ +I+
Sbjct: 310 SVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGS 369
Query: 363 SQNLCARKFRRLYALLKENEMLIRI-GSYQMGNDKELDEAIKKKALMEQFLAQDENALQP 421
AR +++ K + +I I G ++ + +L + + +++FL+Q +
Sbjct: 370 EHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKL--TVSRARKIQRFLSQPFQVAEV 427
Query: 422 F 422
F
Sbjct: 428 F 428
>pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 158 bits (399), Expect = 1e-39
Identities = 115/361 (31%), Positives = 182/361 (49%), Gaps = 16/361 (4%)
Query: 75 EGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGALDYERLAPVITTPIAPLKR 134
EG G KVL + PVG LGR++N +G+ ID +G + ++ A + ++
Sbjct: 71 EGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEM 130
Query: 135 GLIDEIFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTL-MGMITRGCLA--PIKVIALI 191
+ EI G+K +D L KG K+G+F G+GVGK+ L M +I A V A +
Sbjct: 131 SVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGV 190
Query: 192 GERGREIPEFIEK-------NLKGDLSSCVLVVATSDDSPLMRKYGAFCAMSVAEYFKNQ 244
GER RE + NLK S LV ++ P R A ++VAEYF++Q
Sbjct: 191 GERTREGNDLYHXMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 250
Query: 245 -GLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGSIT 303
G DVL +D++ RF A E+ LG P++ GY P+ + + + ER KGSIT
Sbjct: 251 EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI-TTTKKGSIT 309
Query: 304 AFFSVLVEGDDLSDPIADQTRSILDGHIVLSRELTDYGIYPPINILNSASRVA-KDIISE 362
+ ++ V DDL+DP T + LD VLSR + + GIYP ++ L+S SR+ +I+
Sbjct: 310 SVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGS 369
Query: 363 SQNLCARKFRRLYALLKENEMLIRI-GSYQMGNDKELDEAIKKKALMEQFLAQDENALQP 421
AR +++ K + +I I G ++ + +L + + +++FL+Q +
Sbjct: 370 EHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKL--TVSRARKIQRFLSQPFQVAEV 427
Query: 422 F 422
F
Sbjct: 428 F 428
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 153 bits (386), Expect = 4e-38
Identities = 116/358 (32%), Positives = 182/358 (50%), Gaps = 15/358 (4%)
Query: 75 EGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGALDYERLAPVITTPIAPLKR 134
+G G +V+ ++ PVG+ LGRV N LG+ ID +G + + I P +
Sbjct: 68 DGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPAPKFEE 127
Query: 135 GLID-EIFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCLAP---IKVIAL 190
+ EI G+K +D L KG K+G+F G+GVGK+ L+ + I V A
Sbjct: 128 LATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAG 187
Query: 191 IGERGREIPE-FIEKNLKGDLSSCVLVVATSDDSPLMRKYGAFCAMSVAEYFKN-QGLDV 248
+GER RE + + E G +S +V ++ P R A +++AEYF++ QG D
Sbjct: 188 VGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDEQGQDG 247
Query: 249 LFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGSITAFFSV 308
L +D++ RF A E+ LG P++ GY P+ + + QL ER KGSIT+ ++
Sbjct: 248 LLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERITSTA-KGSITSIQAI 306
Query: 309 LVEGDDLSDPIADQTRSILDGHIVLSRELTDYGIYPPINILNSASR-VAKDIISESQNLC 367
V DD +DP T S LD L R+L + GIYP ++ L S SR +A +I+ E
Sbjct: 307 YVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRALAPEIVGEEHYQV 366
Query: 368 ARKFRRLYALLKENEMLIRIGSYQMGNDKELDE---AIKKKALMEQFLAQDENALQPF 422
ARK ++ KE + +I I +G D+ DE + + ++ FL+Q+ + + F
Sbjct: 367 ARKVQQTLERYKELQDIIAI----LGMDELSDEDKLVVHRARRIQFFLSQNFHVAEQF 420
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-Atpase
Complexed With Tentoxin
Length = 498
Score = 140 bits (354), Expect = 2e-34
Identities = 112/354 (31%), Positives = 179/354 (49%), Gaps = 17/354 (4%)
Query: 75 EGARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGALDYERLAPVITTPIAPLKR 134
+G G +V+ L+ PVG LGR+ N LG+ +DN +D +P+ + A +
Sbjct: 83 DGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFTQL 142
Query: 135 GLIDEIFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTL-MGMITRGCLAP--IKVIALI 191
IF G+K ++ L +G K+G+F G+GVGK+ L M +I A + V +
Sbjct: 143 DTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGV 202
Query: 192 GERGREIPE-FIEKNLKGDL-------SSCVLVVATSDDSPLMRKYGAFCAMSVAEYFKN 243
GER RE + ++E G + S LV ++ P R A+++AEYF++
Sbjct: 203 GERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRD 262
Query: 244 QG-LDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGSI 302
DVL +D++ RF A E+ LG P++ GY P+ + + L ER + +GSI
Sbjct: 263 VNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTK-EGSI 321
Query: 303 TAFFSVLVEGDDLSDPIADQTRSILDGHIVLSRELTDYGIYPPINILNSASRVAKD-IIS 361
T+ +V V DDL+DP T + LD VLSR L GIYP ++ L+S S + + I+
Sbjct: 322 TSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVG 381
Query: 362 ESQNLCARKFRRLYALLKENEMLIRI-GSYQMGNDKELDEAIKKKALMEQFLAQ 414
E A++ + KE + +I I G ++ + L A +K +E+FL+Q
Sbjct: 382 EEHYEIAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARK--IERFLSQ 433
>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 502
Score = 137 bits (346), Expect = 2e-33
Identities = 115/410 (28%), Positives = 181/410 (44%), Gaps = 14/410 (3%)
Query: 21 GSVKKIMPNIVYADGF-NPSVGDVVKIEKSDGSECVGMVVVAEKEQFGFTPFNFIEGARA 79
G+V ++ I A G N G+ V+ + +GM + E+ G G +
Sbjct: 29 GTVIQVGDGIARAHGLDNVMSGEAVEFANA----VMGMALNLEENNVGIVILGPYTGIKE 84
Query: 80 GDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGALDYERLAPVITTPIAPLKRGLIDE 139
GD+V + PVG L+GRV+NPLGQ +D G ++ P+ + + R + E
Sbjct: 85 GDEVRRTGRIMEVPVGETLIGRVVNPLGQPVDGLGPVETTETRPIESRAPGVMDRRSVHE 144
Query: 140 IFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLM--GMITRGCLAPIKVIALIGERGRE 197
G+K+ID L+ G+GQ+ I GK+++ +I + I + IG++
Sbjct: 145 PLQTGIKAIDALVPIGRGQRELIIGDRQTGKTSVAIDTIINQKDQNMICIYVAIGQKEST 204
Query: 198 IPEFIEKNLKGDLSSCVLVVATSDDSPLMRKYGA-FCAMSVAEYFKNQGLDVLFIMDSVT 256
+ +E K +VV S P + A + +++ EYF G VL ++D ++
Sbjct: 205 VATVVETLAKHGAPDYTIVVTASASQPAPLLFLAPYAGVAMGEYFMIMGKHVLVVIDDLS 264
Query: 257 RFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGK---EENKGSITAFFSVLVEGD 313
+ A A R++ L L PP + YP L +L+ERA K + GS+TA V +
Sbjct: 265 KQAAAYRQLSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSDAKGGGSLTALPFVETQAG 324
Query: 314 DLSDPIADQTRSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIISESQNLCARKFRR 373
D+S I SI DG I L +L G+ P IN S SRV ++ A R
Sbjct: 325 DISAYIPTNVISITDGQIFLQSDLFFSGVRPAINAGLSVSRVGGAAQIKAMKKVAGTLRL 384
Query: 374 LYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENALQPFE 423
A +E E + GS DK + + A + L QD + P E
Sbjct: 385 DLAAYRELEAFAQFGS---DLDKATQANVARGARTVEVLKQDLHQPIPVE 431
>pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
Length = 510
Score = 122 bits (307), Expect = 6e-29
Identities = 103/380 (27%), Positives = 169/380 (44%), Gaps = 17/380 (4%)
Query: 46 IEKSDGSECVGMVVVAEKEQFGFTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNP 105
+E S G + GM + E + G F + + GD V ++ PVG LLGRV++
Sbjct: 53 VEFSSGLK--GMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDA 110
Query: 106 LGQVIDNKGALDYERLAPVITTPIAPLKRGLIDEIFSVGVKSIDGLLTCGKGQKLGIFAG 165
LG ID KG + + V + R + E G+K++D L+ G+GQ+ I
Sbjct: 111 LGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGD 170
Query: 166 SGVGKSTL-------MGMITRGCLAPIKVIAL---IGERGREIPEFIEKNLKGDLSSCVL 215
GK+++ G K+ + IG++ + + +++ D +
Sbjct: 171 RQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230
Query: 216 VV-ATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPT 274
VV AT+ D+ ++ + S+ EYF++ G L I D +++ A+A R++ L L PP
Sbjct: 231 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPG 290
Query: 275 SKGYPPSALSLLPQLMERAGKEENK---GSITAFFSVLVEGDDLSDPIADQTRSILDGHI 331
+ YP L +L+ERA K + GS+TA + + D+S I SI DG I
Sbjct: 291 REAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQI 350
Query: 332 VLSRELTDYGIYPPINILNSASRVAKDIISESQNLCARKFRRLYALLKENEMLIRIGS-Y 390
L EL GI P IN+ S SRV + + A + A +E + GS
Sbjct: 351 FLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDL 410
Query: 391 QMGNDKELDEAIKKKALMEQ 410
+ L ++ L++Q
Sbjct: 411 DAATQQLLSRGVRLTELLKQ 430
>pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
Length = 510
Score = 122 bits (307), Expect = 6e-29
Identities = 103/380 (27%), Positives = 169/380 (44%), Gaps = 17/380 (4%)
Query: 46 IEKSDGSECVGMVVVAEKEQFGFTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNP 105
+E S G + GM + E + G F + + GD V ++ PVG LLGRV++
Sbjct: 53 VEFSSGLK--GMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDA 110
Query: 106 LGQVIDNKGALDYERLAPVITTPIAPLKRGLIDEIFSVGVKSIDGLLTCGKGQKLGIFAG 165
LG ID KG + + V + R + E G+K++D L+ G+GQ+ I
Sbjct: 111 LGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGD 170
Query: 166 SGVGKSTL-------MGMITRGCLAPIKVIAL---IGERGREIPEFIEKNLKGDLSSCVL 215
GK+++ G K+ + IG++ + + +++ D +
Sbjct: 171 RQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230
Query: 216 VV-ATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPT 274
VV AT+ D+ ++ + S+ EYF++ G L I D +++ A+A R++ L L PP
Sbjct: 231 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPG 290
Query: 275 SKGYPPSALSLLPQLMERAGKEENK---GSITAFFSVLVEGDDLSDPIADQTRSILDGHI 331
+ YP L +L+ERA K + GS+TA + + D+S I SI DG I
Sbjct: 291 REAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQI 350
Query: 332 VLSRELTDYGIYPPINILNSASRVAKDIISESQNLCARKFRRLYALLKENEMLIRIGS-Y 390
L EL GI P IN+ S SRV + + A + A +E + GS
Sbjct: 351 FLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDL 410
Query: 391 QMGNDKELDEAIKKKALMEQ 410
+ L ++ L++Q
Sbjct: 411 DAATQQLLSRGVRLTELLKQ 430
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 121 bits (303), Expect = 2e-28
Identities = 103/380 (27%), Positives = 169/380 (44%), Gaps = 17/380 (4%)
Query: 46 IEKSDGSECVGMVVVAEKEQFGFTPFNFIEGARAGDKVLFLKEGLNFPVGRNLLGRVLNP 105
+E S G + GM + E + G F + + GD V ++ PVG LLGRV++
Sbjct: 53 VEFSSGLK--GMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDA 110
Query: 106 LGQVIDNKGALDYERLAPVITTPIAPLKRGLIDEIFSVGVKSIDGLLTCGKGQKLGIFAG 165
LG ID KG + + V + R + E G+K++D L+ G+GQ+ I
Sbjct: 111 LGNAIDGKGPVGSKIRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGD 170
Query: 166 SGVGKSTL-------MGMITRGCLAPIKVIAL---IGERGREIPEFIEKNLKGDLSSCVL 215
GK+++ G K+ + IG++ + + +++ D +
Sbjct: 171 RQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230
Query: 216 VV-ATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPT 274
VV AT+ D+ ++ + S+ EYF++ G L I D +++ A+A R++ L L PP
Sbjct: 231 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPG 290
Query: 275 SKGYPPSALSLLPQLMERAGKEENK---GSITAFFSVLVEGDDLSDPIADQTRSILDGHI 331
+ YP L +L+ERA K + GS+TA + + D+S I SI DG I
Sbjct: 291 REAYPGDVFYLHSRLLERAAKMNDSFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQI 350
Query: 332 VLSRELTDYGIYPPINILNSASRVAKDIISESQNLCARKFRRLYALLKENEMLIRIGS-Y 390
L EL GI P IN+ S SRV + + A + A +E + GS
Sbjct: 351 FLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDL 410
Query: 391 QMGNDKELDEAIKKKALMEQ 410
+ L ++ L++Q
Sbjct: 411 DAATQQLLSRGVRLTELLKQ 430
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-Atpase
Complexed With Tentoxin
Length = 507
Score = 114 bits (286), Expect = 2e-26
Identities = 104/405 (25%), Positives = 175/405 (42%), Gaps = 14/405 (3%)
Query: 21 GSVKKIMPNIVYADGFNPSV-GDVVKIEKSDGSECVGMVVVAEKEQFGFTPFNFIEGARA 79
G+V ++ I G + + G++V+ E+ +G+ + E G +
Sbjct: 30 GTVLQVGDGIARIHGLDEVMAGELVEFEEGT----IGIALNLESNNVGVVLMGDGLMIQE 85
Query: 80 GDKVLFLKEGLNFPVGRNLLGRVLNPLGQVIDNKGALDYERLAPVITTPIAPLKRGLIDE 139
G V PV LGRV+N L + ID +G + + + + R + E
Sbjct: 86 GSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYE 145
Query: 140 IFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMG--MITRGCLAPIKVIALIGERGRE 197
G+ +ID ++ G+GQ+ I GK+ + ++ + I V IG++
Sbjct: 146 PLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASS 205
Query: 198 IPEFIEKNLKGDLSSCVLVVATSDDSPLMRKYGA-FCAMSVAEYFKNQGLDVLFIMDSVT 256
+ + + + +VVA + DSP +Y A + ++AEYF + L I D ++
Sbjct: 206 VAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLS 265
Query: 257 RFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEEN---KGSITAFFSVLVEGD 313
+ A A R++ L L PP + YP L +L+ERA K + +GS+TA V +
Sbjct: 266 KQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSLLGEGSMTALPIVETQAG 325
Query: 314 DLSDPIADQTRSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIISESQNLCARKFRR 373
D+S I SI DG I LS +L + GI P IN+ S SRV ++ A K +
Sbjct: 326 DVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKKVAGKLKL 385
Query: 374 LYALLKENEMLIRIGSYQMGNDKELDEAIKKKALMEQFLAQDENA 418
A E E + S DK + + + + L Q ++A
Sbjct: 386 ELAQFAELEAFAQFAS---DLDKATQNQLARGQRLRELLKQPQSA 427
>pdb|1GEQ|B Chain B, Entropic Stabilization Of The Tryptophan Synthase
A-Subunit From A Hyperthermophile, Pyrococcus Furiosus:
X-Ray Analysis And Calorimetry
pdb|1GEQ|A Chain A, Entropic Stabilization Of The Tryptophan Synthase
A-Subunit From A Hyperthermophile, Pyrococcus Furiosus:
X-Ray Analysis And Calorimetry
Length = 248
Score = 28.1 bits (61), Expect = 2.0
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 162 IFAGSGVGKS----TLMGMITRGCLAPIKVIALIGERGREIPEFIEKNLK 207
+ G GV K +L+ G + ++ +IGE+GRE EF++K ++
Sbjct: 194 VAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKGREATEFLKKKVE 243
>pdb|1HBN|B Chain B, Methyl-Coenzyme M Reductase
pdb|1HBN|E Chain E, Methyl-Coenzyme M Reductase
pdb|1MRO|B Chain B, Methyl-Coenzyme M Reductase
pdb|1MRO|E Chain E, Methyl-Coenzyme M Reductase
pdb|1HBO|B Chain B, Methyl-Coenzyme M Reductase Mcr-Red1-Silent
pdb|1HBO|E Chain E, Methyl-Coenzyme M Reductase Mcr-Red1-Silent
pdb|1HBM|B Chain B, Methyl-Coenzyme M Reductase Enzyme Product Complex
pdb|1HBM|E Chain E, Methyl-Coenzyme M Reductase Enzyme Product Complex
pdb|1HBU|B Chain B, Methyl-Coenzyme M Reductase In The Mcr-Red1-Silent State
In Complex With Coenzyme M
pdb|1HBU|E Chain E, Methyl-Coenzyme M Reductase In The Mcr-Red1-Silent State
In Complex With Coenzyme M
Length = 442
Score = 28.1 bits (61), Expect = 2.0
Identities = 22/63 (34%), Positives = 33/63 (51%), Gaps = 15/63 (23%)
Query: 281 SALSLLPQLMERAGKEENKGSITAFFSVLVEGDDLSDPIADQTRSILDGHIVLSRELTDY 340
+A +L+ L++ GKE GS+ A LVE R++ DG I + +ELTDY
Sbjct: 246 NADNLVFDLVKANGKEGTVGSVIAD---LVE------------RALEDGVIKVEKELTDY 290
Query: 341 GIY 343
+Y
Sbjct: 291 KVY 293
>pdb|1MN2| Manganese Peroxidase Substrate Binding Site Mutant E35q, D179n
Length = 357
Score = 28.1 bits (61), Expect = 2.0
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 13/89 (14%)
Query: 22 SVKKIMPNIVYADGFNPSVGDVVKIEKSDGSECVGMV-VVAEKEQFGFTPFNFIEGARAG 80
SV KI+ A GF P +VV + S V + F TPF F
Sbjct: 147 SVTKILQRFEDAGGFTPF--EVVSLLASHSVARANKVDQTIDAAPFDSTPFTF------- 197
Query: 81 DKVLFLK---EGLNFPVGRNLLGRVLNPL 106
D +FL+ +G+ FP N G V +PL
Sbjct: 198 DTQVFLEVLLKGVGFPGSANNTGEVASPL 226
>pdb|1MN1| Manganese Peroxidase Substrate Binding Site Mutant D179n
Length = 357
Score = 28.1 bits (61), Expect = 2.0
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 13/89 (14%)
Query: 22 SVKKIMPNIVYADGFNPSVGDVVKIEKSDGSECVGMV-VVAEKEQFGFTPFNFIEGARAG 80
SV KI+ A GF P +VV + S V + F TPF F
Sbjct: 147 SVTKILQRFEDAGGFTPF--EVVSLLASHSVARANKVDQTIDAAPFDSTPFTF------- 197
Query: 81 DKVLFLK---EGLNFPVGRNLLGRVLNPL 106
D +FL+ +G+ FP N G V +PL
Sbjct: 198 DTQVFLEVLLKGVGFPGSANNTGEVASPL 226
>pdb|1MNP| Manganese Peroxidase
Length = 357
Score = 27.7 bits (60), Expect = 2.6
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 13/89 (14%)
Query: 22 SVKKIMPNIVYADGFNPSVGDVVKIEKSDGSECVGMV-VVAEKEQFGFTPFNFIEGARAG 80
SV KI+ A GF P +VV + S V + F TPF F
Sbjct: 147 SVTKILQRFEDAGGFTPF--EVVSLLASHSVARADKVDQTIDAAPFDSTPFTF------- 197
Query: 81 DKVLFLK---EGLNFPVGRNLLGRVLNPL 106
D +FL+ +G+ FP N G V +PL
Sbjct: 198 DTQVFLEVLLKGVGFPGSANNTGEVASPL 226
>pdb|1BFD| Benzoylformate Decarboxylase From Pseudomonas Putida
Length = 528
Score = 27.7 bits (60), Expect = 2.6
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 269 LGEPPTSKGYPPSALSLLPQLMERAGKEENKGSITAFFSVLVEGDDLSDPIADQTRSILD 328
L P Y P++ + +P M RA + + + V DD Q+ + D
Sbjct: 118 LPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVY-LSVPYDDWDKDADPQSHHLFD 176
Query: 329 GHIVLSRELTDYGIYPPINILNSASRVA 356
H+ S L D + + LNSAS A
Sbjct: 177 RHVSSSVRLNDQDLDILVKALNSASNPA 204
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 26.6 bits (57), Expect = 5.9
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 146 KSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIT 178
K++DG+ ++ KG I +G GKSTL+ +IT
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVIT 54
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 26.6 bits (57), Expect = 5.9
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 146 KSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIT 178
K++DG+ ++ KG I +G GKSTL+ +IT
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVIT 54
>pdb|1G0O|C Chain C, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|D Chain D, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0N|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4,5,6,7-Tetrachloro-Phthalide
pdb|1DOH|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4-Nitro-Inden-1-One
pdb|1G0O|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1G0O|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And Pyroquilon
pdb|1DOH|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4-Nitro-Inden-1-One
pdb|1G0N|B Chain B, Structure Of Trihydroxynaphthalene Reductase In Complex
With Nadph And 4,5,6,7-Tetrachloro-Phthalide
Length = 283
Score = 26.6 bits (57), Expect = 5.9
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 123 PVITTPIAPLKRGLIDEIFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCL 182
P +T P K I S++G + G AG G+G+ M + RGC
Sbjct: 2 PAVTQPRGESKYDAIPGPLGPQSASLEGKVALVTG------AGRGIGREMAMELGRRGCK 55
Query: 183 APIKVIALIGERGREIPEFIEKNLKGDLSSCV 214
+ A E E+ I+KN G ++CV
Sbjct: 56 VIVN-YANSTESAEEVVAAIKKN--GSDAACV 84
>pdb|1AQT| Epsilon Subunit Of F1f0-Atp Synthase From Escherichia Coli
pdb|1QO1|J Chain J, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
Length = 138
Score = 26.2 bits (56), Expect = 7.7
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 261 AQREIGLALGEPPTSKGYPPSALSLLPQ-------LMERAGKEENKGSITAFFSVLVEGD 313
++ E+G+ G P P + ++ Q + E G++T + G
Sbjct: 28 SEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADTAIRGQ 87
Query: 314 DLSDPIADQTRSILDGHIVLSRELTDY 340
DL + A + + + HI S DY
Sbjct: 88 DLDEARAMEAKRKAEEHISSSHGDVDY 114
>pdb|1BSH|A Chain A, Solution Structure Of The Epsilon Subunit Of The F1-
Atpsynthase From Escherichia Coli And Orientation Of The
Subunit Relative To The Beta Subunits Of The Complex
pdb|1BSN|A Chain A, Solution Structure Of The Epsilon Subunit Of The F1-
Atpsynthase From Escherichia Coli And Orientation Of The
Subunit Relative To The Beta Subunits Of The Complex
pdb|1FS0|E Chain E, Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI
Length = 138
Score = 26.2 bits (56), Expect = 7.7
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 261 AQREIGLALGEPPTSKGYPPSALSLLPQ-------LMERAGKEENKGSITAFFSVLVEGD 313
++ E+G+ G P P + ++ Q + E G++T + G
Sbjct: 28 SEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADTAIRGQ 87
Query: 314 DLSDPIADQTRSILDGHIVLSRELTDY 340
DL + A + + + HI S DY
Sbjct: 88 DLDEARAMEAKRKAEEHISSSHGDVDY 114
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.140 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,439,065
Number of Sequences: 13198
Number of extensions: 104708
Number of successful extensions: 341
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 24
length of query: 434
length of database: 2,899,336
effective HSP length: 91
effective length of query: 343
effective length of database: 1,698,318
effective search space: 582523074
effective search space used: 582523074
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)