BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646031|ref|NP_208213.1| isoleucyl-tRNA synthetase
(ileS) [Helicobacter pylori 26695]
(920 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna ... 611 e-175
pdb|1JZS|A Chain A, Isoleucyl-Trna Synthetase Complexed Wit... 326 6e-90
pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophil... 169 2e-42
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus The... 65 4e-11
pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methion... 46 2e-05
pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escheric... 46 2e-05
pdb|1A8H| Methionyl-Trna Synthetase From Thermus Thermoph... 39 0.002
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Syn... 34 0.064
pdb|1EIY|A Chain A, The Crystal Structure Of Phenylalanyl-T... 30 0.93
pdb|1FQR|A Chain A, X-Ray Crystal Structure Of Cobalt-Bound... 27 7.9
pdb|1QNI|A Chain A, Crystal Structure Of Nitrous Oxide Redu... 27 7.9
pdb|1GR0|A Chain A, Myo-Inositol 1-Phosphate Synthase From ... 27 7.9
>pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 611 bits (1576), Expect = e-175
Identities = 353/955 (36%), Positives = 528/955 (54%), Gaps = 81/955 (8%)
Query: 3 EYKDTLNLNTTTFSMKGNLSVNEPKTYAKWQEQQAFKRMQARKDNHGDFTLHDGPPYANG 62
+Y+ TL + T F M+G L EP+ KW + + + + + F LHDGPPYANG
Sbjct: 2 DYEKTLLMPKTDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANG 61
Query: 63 HLHLGHALNKILKDIVVKREYFKGKKIYYTPGWDCHGLPIEQQILER-LEKEKTSLENPT 121
+LH+GHALNKILKD +V+ + +G Y PGWD HGLPIEQ + ++ ++++K S
Sbjct: 62 NLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAE-- 119
Query: 122 LFREKCRDHAKKFLEIQKNEFLQLGVLGDFEDPYKTMDFKFEASIYRALVEVAKKGLLKE 181
FREKC++ A + +E+QK +F +LGV GDF DPY T+ ++EA+ R E+A KGL+ +
Sbjct: 120 -FREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYK 178
Query: 182 RHKPIYWSYACESALAEAEVEYKMKKSPSIFVAFGLKKESLEKLKVKKASLVIWTTTPWT 241
KP+YWS + ES+LAEAE+EY K+S SI+VAF +K + + + A +IWTTTPWT
Sbjct: 179 GKKPVYWSPSSESSLAEAEIEYHDKRSASIYVAFNVKDD--KGVVDADAKFIIWTTTPWT 236
Query: 242 LYANVAIALKKDAVYA---LTQKGYLVAKALHEKLAALGVVDN---EITHEFNSNDLEYL 295
+ +NVAI + + Y + + Y++A+AL + +A D ++ E+ +LE++
Sbjct: 237 IPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWV 296
Query: 296 VATNPLNQRDSLVALGEHVGLEDGTGAVHTAPGHGEEDYYLGLRYNLEVLMSVDEKGCYD 355
VA +P R+SLV G+HV + GTG VHTAPGHGE+DY +G +Y L V+ +D+KG +
Sbjct: 297 VAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFT 356
Query: 356 EGIIHNQLLDESYLGEHVFKAQKRIIEQLGD--SLLLEQEIEHSYPHCWRTHKPVIYRAT 413
E + G KA K + + L + +LL I HSYPH WRT KPVI+RAT
Sbjct: 357 EE-------GGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRAT 409
Query: 414 TQWFILMDEPFIQNDGSQKTLREVALDAIEKVEFVPSSGKNRLKTMIENRPDWCLSRQRK 473
QWF S +R+ LDAIE F + GK R+ M+ +R +W +SRQR
Sbjct: 410 PQWF-----------ASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRV 458
Query: 474 WGVPLAFFIDKRTNKPCFESEVLEHVANLFEKKGCDVWWEYSVKDLLPPSYQEDAKH--- 530
WGVPL F + + E + HVA+LF + G ++W+E KDLLP +
Sbjct: 459 WGVPLPVFYAEN-GEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGT 517
Query: 531 YEKIMHILDVWFDSGSTFKAVLEDYHGEKGQSPSDVILEGSDQHRGWFQSSLLIGCVLNN 590
+ K I+DVWFDSGS+ + VLE + P+D+ LEGSDQ+RGWF SS+
Sbjct: 518 FTKETDIMDVWFDSGSSHRGVLETR--PELSFPADMYLEGSDQYRGWFNSSITTSVATRG 575
Query: 591 QAPFKKVITHGFIVDEKGEKMSKSKGNVVSLDKLLKTHGSDVVRLWVAFNDYQNDLRVSQ 650
+P+K +++HGF++D +G+KMSKS GNV+ D+++K G+D+ RLWV+ DY D+R+S
Sbjct: 576 VSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISD 635
Query: 651 TFFTQTEQHYKKFRNTLKFLLANFSDMDLKNLERPHN-FSPLDHFMLETLETISAGVNSA 709
QT Y+K RNTL+F+L N +D + P + +D ++L L +A +
Sbjct: 636 EILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINN 695
Query: 710 FEEHDFVKGLNILMAFVTNELSGIYLDACKDSLYCDSKNNEKRQAIQMVLLATASKLCYF 769
+E D++ + F+ ELS YLD KD LY + +++ R+++Q VL +
Sbjct: 696 YENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKL 755
Query: 770 LAPILTHTIEEVLEHSQALRIFLQAKDVFDLKDISVSEKLHLKEFKKP--------ENFE 821
LAPIL HT EEV H+ ++ E +HL + K + +
Sbjct: 756 LAPILVHTAEEVWSHTPHVK----------------EESVHLADMPKVVEVDQALLDKWR 799
Query: 822 AVLALRSAFNEELDRLKKEGVIKNSLECAIEV--------KEKALDENLVEELLMVSFVG 873
+ LR N L+ + E VI SLE + + E + + +L +VS V
Sbjct: 800 TFMNLRDDVNRALETARNEKVIGKSLEAKVTIASNDKFNASEFLTSFDALHQLFIVSQVK 859
Query: 874 IAKEKLSETPAF-----TLFKAPFYKCPRCWRFKSELENTP-----CKRCEQVLK 918
+ + + A+ + A KC RCW + +L C RC+QV+K
Sbjct: 860 VVDKLDDQATAYEHGDIVIEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVVK 914
>pdb|1JZS|A Chain A, Isoleucyl-Trna Synthetase Complexed With Mupirocin
pdb|1ILE| Isoleucyl-Trna Synthetase
pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
Length = 821
Score = 326 bits (836), Expect = 6e-90
Identities = 254/818 (31%), Positives = 392/818 (47%), Gaps = 86/818 (10%)
Query: 25 EPKTYAKWQEQQAFKRMQARKDNHGDFTLHDGPPYANGHLHLGHALNKILKDIVVKREYF 84
E + A W+ ++ F++ + +T+++GPP ANG H+GHA + KD+ + +
Sbjct: 14 EEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTM 73
Query: 85 KGKKIYYTP---GWDCHGLPIEQQILERLE-KEKTSLENPTL--FREKCRDHAKKFLEIQ 138
+G YY P GWD HGLP+E ++ ++L K K +E + F + CR+ + +
Sbjct: 74 RG---YYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEW 130
Query: 139 KNEFLQLGVLGDFEDPYKTMDFKFEASIYRALVEVAKKGLLKERHKPIYWSYACESALAE 198
+ ++ D ED Y T++ + SI+ +L + +GLL HK + + C + L+
Sbjct: 131 EAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSS 190
Query: 199 AEVE--YKMKKSPSIFVAFGLKKESLEKLKVKKASLVIWTTTPWTLYANVAIALKKDAVY 256
EV YK + PS++V F LK+ +KL ++KASL+IWTTTPWTL NVA A+ + Y
Sbjct: 191 HEVALGYKEIQDPSVYVRFPLKEP--KKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTY 248
Query: 257 ALTQKG---YLVAKALHEKLAALGVVDNEITHEFNSNDLEYLVATNPLNQ---RDSLVAL 310
A Q G ++ + L KL G ++ F LE L T P Q + V L
Sbjct: 249 AAFQVGDEALILEEGLGRKLLGEG---TQVLKTFPGKALEGLPYTPPYPQALEKGYFVVL 305
Query: 311 GEHVGLEDGTGAVHTAPGHGEEDYYLGLRYNLEVLMSVDEKGCYDEGIIHNQLLDESYLG 370
++V EDGTG VH AP G ED Y L +L +VDE+G +LL E + G
Sbjct: 306 ADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEG---------KLLVEPFKG 356
Query: 371 EHVFKAQKRIIEQL-GDSLLLEQE-IEHSYPHCWRTHKPVIYRATTQWFI---LMDEPFI 425
+ +A + I+ L G LL ++E HSYPHCWR P++Y AT WFI L + I
Sbjct: 357 LYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELI 416
Query: 426 QNDGSQKTLREVALDAIEKVEFVPSSGK-NRLKTMIENRPDWCLSRQRKWGVPLAFFIDK 484
+N+ +++ +VP K R ++N DW LSR R WG PL ++ +
Sbjct: 417 RNN--------------QEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQ 462
Query: 485 RTNKPCFESEVLEHVANLFEKKGCDVWWEYSVKDLLPP-----SYQEDAK-------HYE 532
K E + + E K + K L P Y + +
Sbjct: 463 ACGKE-------EAIGSFQELKA------RATKPLPEPFDPHRPYVDQVELACACGGTMR 509
Query: 533 KIMHILDVWFDSGS-TFKAVLEDYHGE---KGQSPSDVILEGSDQHRGWFQSSLLIGCVL 588
++ +++DVW+DSG+ F ++ + E + P+D I EG DQ RGWF S +G +L
Sbjct: 510 RVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVML 569
Query: 589 NNQAPFKKVITHGFIVDEKGEKMSKSKGNVVSLDKLLKTHGSDVVRLWVAFN-DYQNDLR 647
FK VI HG I+DEKG+KMSKSKGNVV +++ G+D +R ++ + + D R
Sbjct: 570 FGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRR 629
Query: 648 VSQTFFTQT-EQHYKKFRNTLKFLL--ANFSDMDLKNLERPHNFSPLDHFMLETLETISA 704
+T ++ N F + AN DLKN P +D ++L ++ +
Sbjct: 630 FGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQ 689
Query: 705 GVNSAFEEHDFVKGLNILMAFVTNELSGIYLDACKDSLYCDSKNNEKRQAIQMVLLATAS 764
V A E +D L FV +LS Y+ + + + ++ A L A
Sbjct: 690 RVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNEDALDREAA--YATLYEAL 747
Query: 765 KLCYFLAPILTHTIEEVLEHSQALRIFLQAKDVFDLKD 802
L LA T + EVL + + L+AK+ L D
Sbjct: 748 VLVATLAAPFTPFLAEVLWQNLVRSVRLEAKESVHLAD 785
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
Length = 862
Score = 169 bits (427), Expect = 2e-42
Identities = 191/788 (24%), Positives = 323/788 (40%), Gaps = 112/788 (14%)
Query: 26 PKTY------AKWQEQQAFKRMQAR-KDNHGDFTLHDGPPYANGHLHLGHALNKILKDIV 78
PK Y KW E+ A A K F + PP G LH+GHAL+ L+D +
Sbjct: 4 PKAYDPKSVEPKWAEKWAKNPFVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDAL 63
Query: 79 VKREYFKGKKIYYTPGWDCHGLPIEQQILERLEKEKTSLENPTLFREKCRDHAKKFLEIQ 138
++ + +G + + PG D G+ + + L KE + + L REK + ++ E
Sbjct: 64 IRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHD--LGREKFLERVWQWKEES 121
Query: 139 KNEFLQ----LGVLGDFEDPYKTMDFKFEASIYRALVEVAKKGLLKERHKPIYWSYACES 194
L+ LG D+ TMD K ++ A +GL + + W CE+
Sbjct: 122 GGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCET 181
Query: 195 ALAEAEVEYKMKKSPSIFVAFGLKKESLEKLKVKKASLV-IWTTTPWTLYANVAIALK-K 252
L++ EVE + P+ + L+ E V+ + I T P T++A+ AIA+ +
Sbjct: 182 TLSDLEVETE----PTPGKLYTLRYE------VEGGGFIEIATVRPETVFADQAIAVHPE 231
Query: 253 DAVYALTQKGYLVAKALHEKLAALGVVDNEITHEFNSNDLEYLVATNPLNQRDSLVALGE 312
D Y +L+ K L + + + +P ++D
Sbjct: 232 DERYR-----HLLGKRARIPLTEVWIP----------------ILADPAVEKDF------ 264
Query: 313 HVGLEDGTGAVHTAPGHGEEDYYLGLRYNLEVLMSVDEKGCYDEGIIHNQLLDESYLGEH 372
GTGA+ P H DY +G R+ L+ + ++ EG + + + E+ G
Sbjct: 265 ------GTGALKVTPAHDPLDYEIGERHGLKPVSVINL-----EGRMEGERVPEALRGLD 313
Query: 373 VFKAQKRIIEQLGDS--LLLEQEIEHSYPHCWRTHKPVIYRATTQWFILMDEPFIQNDGS 430
F+A+++ +E ++ L+ E++ + C R P+ Y QW++ M
Sbjct: 314 RFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRM---------- 363
Query: 431 QKTLREVALDAIEK--VEFVPSSGKNRLKTMIENRPDWCLSRQRKWG--VPLAFFIDKRT 486
+ L E L + + + FVP K +EN DW +SRQ WG +P + D
Sbjct: 364 -RPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCED--- 419
Query: 487 NKPCFESEVLEHVANLFEKKGCDVWWEYSVKDLLPPSYQEDAKHYEKIMHILDVWFDSGS 546
C V L + C+ +K ED + D WF S
Sbjct: 420 ---CQAVNVPRPERYLEDPTSCEACGSPRLKR------DED---------VFDTWFSSAL 461
Query: 547 TFKAVL---EDYHGEKGQSPSDVILEGSDQHRGWFQSSLLIGCVLNNQAPFKKVITHGFI 603
+ L E+ K P DV++ G D W + G + PFK V+ HG +
Sbjct: 462 WPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLV 521
Query: 604 VDEKGEKMSKSKGNVVSLDKLLKTHGSDVVRLWVAF-NDYQNDLRVSQTFFTQTEQHYKK 662
+DEKG+KMSKSKGNV+ ++++ +G+D +R + + D+R+ + K
Sbjct: 522 LDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANK 581
Query: 663 FRNTLKFLLANFSDMDLKNLERPHNFSPLDHFMLETLETISAGVNSAFEEHDFVKGLNIL 722
N +F+L + K + P + D FM L + + +E D + +
Sbjct: 582 LYNAARFVLLSREGFQAKE-DTP---TLADRFMRSRLSRGVEEITALYEALDLAQAAREV 637
Query: 723 MAFVTNELSGIYLDACKDSLYCDSKNNEKRQAIQMVLLATASKLCYFLAPILTHTIEEVL 782
V +E YL+A K +L + N + ++ V LA KL + + P LT + + L
Sbjct: 638 YELVWSEFCDWYLEAAKPAL--KAGNAHTLRTLEEV-LAVLLKLLHPMMPFLTSELYQAL 694
Query: 783 EHSQALRI 790
+ L +
Sbjct: 695 TGKEELAL 702
>pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
Length = 878
Score = 64.7 bits (156), Expect = 4e-11
Identities = 98/499 (19%), Positives = 172/499 (33%), Gaps = 125/499 (25%)
Query: 30 AKWQ---EQQAFKRMQARKDNHGDFTLHDGPPYANGHLHLGHALNKILKDIVVKREYFKG 86
AKWQ E++ F + + G + PY +G LH+GH N + D++ + +G
Sbjct: 11 AKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQG 70
Query: 87 KKIYYTPGWDCHGLPIEQQILERLEKEKTSLENPTLFREKCRDHAKKFLEIQKNEFLQLG 146
++ + GWD GLP E L+ F +D + K +G
Sbjct: 71 YEVLHPMGWDAFGLPAENAALK--------------FGVHPKDWTYANIRQAKESLRLMG 116
Query: 147 VLGDFEDPYKTMDFKFEASIYRALVEVAKKGLLKERHKPIYWSYACESALAEAEV----- 201
+L D++ T + ++ +++ +KGL + W C++ LA +V
Sbjct: 117 ILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRC 176
Query: 202 ------------------------------------EYKMKKSPSIFVAFGLKKESLEKL 225
K+K ++ E L +
Sbjct: 177 WRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPV 236
Query: 226 KVKKASLVIWTTTPWTLYANVAIALKKDAVYALTQKGYLVAKALHEKLAALGVVDNEITH 285
+ K+ + ++TT P TL+ + L + L + E LA + +
Sbjct: 237 EGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLE---LAAPEKREEVLAYVEAAKRKTEI 293
Query: 286 EFNSNDLEY------LVATNPLNQRDSLVALGEHVGLEDGTGAVHTAPGHGEEDYYLGLR 339
E + E A NP + ++V GTGA+ P H + DY +
Sbjct: 294 ERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARK 353
Query: 340 YNLEVLMSVDEKGCYDEGIIHNQLLDESYLGEHVFKAQKRIIEQLGDSLLLEQEIEHSYP 399
+ L + K++IE+ G+ L + +E +Y
Sbjct: 354 FGLPI---------------------------------KKVIERPGEP--LPEPLERAY- 377
Query: 400 HCWRTHKPVIYRATTQWFILMDEPFIQNDGSQKTLREVALDAIEKVEFVPSSGKNRLKTM 459
+P I ++ PF S++ R+V EK GK R+
Sbjct: 378 -----EEPGI--------MVNSGPF-DGTESEEGKRKVIAWLEEK-----GLGKGRVTYR 418
Query: 460 IENRPDWCLSRQRKWGVPL 478
+ DW +SRQR WG P+
Sbjct: 419 LR---DWLISRQRYWGTPI 434
Score = 30.8 bits (68), Expect = 0.71
Identities = 13/29 (44%), Positives = 19/29 (64%)
Query: 611 MSKSKGNVVSLDKLLKTHGSDVVRLWVAF 639
MSKSKGN V + +K G+D+ R+ + F
Sbjct: 638 MSKSKGNGVMVGPFVKEQGADIARITILF 666
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 46.2 bits (108), Expect = 2e-05
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 58 PYANGHLHLGHALNKILKDIVVKREYFKGKKIYYTPGWDCHGLPI-----------EQQI 106
PYANG +HLGH L I D+ V+ + +G ++ + D HG PI EQ I
Sbjct: 15 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMI 74
Query: 107 LERLEKEKTSLENPTLFREKCRD-HAKK--------FLEIQKNEFLQLGVLGDFEDPYKT 157
E ++ +T + + H+++ + +++N F++ + DP K
Sbjct: 75 GEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKG 134
Query: 158 M 158
M
Sbjct: 135 M 135
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 46.2 bits (108), Expect = 2e-05
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 58 PYANGHLHLGHALNKILKDIVVKREYFKGKKIYYTPGWDCHGLPI-----------EQQI 106
PYANG +HLGH L I D+ V+ + +G ++ + D HG PI EQ I
Sbjct: 14 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMI 73
Query: 107 LERLEKEKTSLENPTLFREKCRD-HAKK--------FLEIQKNEFLQLGVLGDFEDPYKT 157
E ++ +T + + H+++ + +++N F++ + DP K
Sbjct: 74 GEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKG 133
Query: 158 M 158
M
Sbjct: 134 M 134
>pdb|1A8H| Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 39.3 bits (90), Expect = 0.002
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 10/121 (8%)
Query: 536 HILDVWFDSGSTFKAVLEDYHGEKGQS--PSDVILEGSD---QHRGWFQSSLLIGCVLNN 590
H+ VWFD+ + + L+ GE ++ P L G D H ++ + L +
Sbjct: 222 HVTYVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGI--- 278
Query: 591 QAPFKKVITHGFIVDEKGEKMSKSKGNVVSLDKLLKTHGSDVVRLWVAFN-DYQNDLRVS 649
++ + GF++ G KMSK+ GNVV LL+ +G D +R ++ Y D VS
Sbjct: 279 -PMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVS 337
Query: 650 Q 650
+
Sbjct: 338 E 338
Score = 33.9 bits (76), Expect = 0.084
Identities = 28/143 (19%), Positives = 58/143 (39%), Gaps = 16/143 (11%)
Query: 59 YANGHLHLGHALNKILKDIVVKREYFKGKKIYYTPGWDCHGLPIEQQILERLEKEKTSLE 118
Y N HLGHA ++ D + + G + ++ G D HG + + + E
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETV-------YRAAQAAGE 65
Query: 119 NPTLFREKCRDHAKKFLEIQKNEFLQLGVLGDFEDPYKTMDFKFEASIYRALVEVAKKGL 178
+P F ++ K+ ++ LG+ ++D +T + + + + L +V + G
Sbjct: 66 DPKAFVDRVSGRFKRAWDL-------LGIA--YDDFIRTTEERHKKVVQLVLKKVYEAGD 116
Query: 179 LKERHKPIYWSYACESALAEAEV 201
+ + +CE E E+
Sbjct: 117 IYYGEYEGLYCVSCERFYTEKEL 139
>pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
Length = 461
Score = 34.3 bits (77), Expect = 0.064
Identities = 23/73 (31%), Positives = 36/73 (48%), Gaps = 4/73 (5%)
Query: 600 HGFIVDEKGEKMSKSKGNVVSLDKLLKTHGSDVVRLWVAFNDYQNDLRVSQTFFTQT--- 656
H +V EKMSKS GN ++ +LK + ++ VR ++ Y++ L S+ Q
Sbjct: 256 HSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAA 315
Query: 657 -EQHYKKFRNTLK 668
E+ Y R T K
Sbjct: 316 LERLYTALRGTDK 328
>pdb|1EIY|A Chain A, The Crystal Structure Of Phenylalanyl-Trna Synthetase From
Thermus Thermophilus Complexed With Cognate Trnaphe
pdb|1JJC|A Chain A, Crystal Structure At 2.6a Resolution Of Phenylalanyl-Trna
Synthetase Complexed With Phenylalanyl-Adenylate In The
Presence Of Manganese
pdb|1PYS|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
pdb|1B7Y|A Chain A, Phenylalanyl Trna Synthetase Complexed With
Phenylalaninyl- Adenylate
pdb|1B70|A Chain A, Phenylalanyl Trna Synthetase Complexed With Phenylalanine
Length = 350
Score = 30.4 bits (67), Expect = 0.93
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 786 QALRIFLQAKDVFDLKDISVSEKLHLKEFKKPENFEAVLALRSAFNEELDRLKKEGVIKN 845
+AL A+D+ +LK ++ + K+ + + + AL E R ++ IK
Sbjct: 4 EALAAIQNARDLEELK--ALKARYLGKKGLLTQEMKGLSAL--PLEERRKRGQELNAIKA 59
Query: 846 SLECAIEVKEKALDENLVEELL 867
+LE A+E +EKAL+E ++E L
Sbjct: 60 ALEAALEAREKALEEAALKEAL 81
>pdb|1FQR|A Chain A, X-Ray Crystal Structure Of Cobalt-Bound F93iF95MW97V
Carbonic Anhydrase (Caii) Variant
pdb|1FR4|A Chain A, X-Ray Crystal Structure Of Copper-Bound F93iF95MW97V
Carbonic Anhydrase (Caii) Variant
pdb|1FQN|A Chain A, X-Ray Crystal Structure Of Metal-Free F93iF95MW97V
Carbonic Anhydrase (Caii) Variant
pdb|1FQM|A Chain A, X-Ray Crystal Structure Of Zinc-Bound F93iF95MW97V
Carbonic Anhydrase (Caii) Variant
Length = 260
Score = 27.3 bits (59), Expect = 7.9
Identities = 15/58 (25%), Positives = 31/58 (52%), Gaps = 2/58 (3%)
Query: 270 HEKLAALGVVDN--EITHEFNSNDLEYLVATNPLNQRDSLVALGEHVGLEDGTGAVHT 325
+++ +L +++N EF+ + + ++ PL+ L+ + HVG DG G+ HT
Sbjct: 51 YDQATSLRILNNGHAFNVEFDDSQDKAVLKGGPLDGTYRLIQIHMHVGSLDGQGSEHT 108
>pdb|1QNI|A Chain A, Crystal Structure Of Nitrous Oxide Reductase From
Pseudomonas Nautica, At 2.4a Resolution
pdb|1QNI|B Chain B, Crystal Structure Of Nitrous Oxide Reductase From
Pseudomonas Nautica, At 2.4a Resolution
pdb|1QNI|C Chain C, Crystal Structure Of Nitrous Oxide Reductase From
Pseudomonas Nautica, At 2.4a Resolution
pdb|1QNI|D Chain D, Crystal Structure Of Nitrous Oxide Reductase From
Pseudomonas Nautica, At 2.4a Resolution
pdb|1QNI|E Chain E, Crystal Structure Of Nitrous Oxide Reductase From
Pseudomonas Nautica, At 2.4a Resolution
pdb|1QNI|F Chain F, Crystal Structure Of Nitrous Oxide Reductase From
Pseudomonas Nautica, At 2.4a Resolution
Length = 581
Score = 27.3 bits (59), Expect = 7.9
Identities = 15/38 (39%), Positives = 19/38 (49%), Gaps = 11/38 (28%)
Query: 53 LHDGPPYANGHLHLGHALNKILKDIVVKREYFKGKKIY 90
+HDGP YA H I+V+R+ K KKIY
Sbjct: 427 VHDGPTYAEPH-----------DCILVRRDQIKTKKIY 453
>pdb|1GR0|A Chain A, Myo-Inositol 1-Phosphate Synthase From Mycobacterium
Tuberculosis In Complex With Nad And Zinc
Length = 367
Score = 27.3 bits (59), Expect = 7.9
Identities = 29/127 (22%), Positives = 49/127 (37%), Gaps = 19/127 (14%)
Query: 271 EKLAALGVVDNEITHEFNSNDLEYLVATNPLNQRDSLVALGEHVG-LEDGTGAVHTAPGH 329
+K++ V + + EF + D+ + +HVG L+D A G
Sbjct: 248 KKISKTQAVTSNLKREFKTKDVH--------------IGPSDHVGWLDDRKWAYVRLEGR 293
Query: 330 GEEDYYLGLRYNLEVLMSVDEKGCYDEGIIHNQLLDESYLGEHVFKAQKRII----EQLG 385
D L L Y LEV S + G + + ++ + +G V A ++ EQL
Sbjct: 294 AFGDVPLNLEYKLEVWDSPNSAGVIIDAVRAAKIAKDRGIGGPVIPASAYLMKSPPEQLP 353
Query: 386 DSLLLEQ 392
D + Q
Sbjct: 354 DDIARAQ 360
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,417,566
Number of Sequences: 13198
Number of extensions: 234979
Number of successful extensions: 591
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 549
Number of HSP's gapped (non-prelim): 24
length of query: 920
length of database: 2,899,336
effective HSP length: 97
effective length of query: 823
effective length of database: 1,619,130
effective search space: 1332543990
effective search space used: 1332543990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)