BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646032|ref|NP_208214.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(84 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DM9|B Chain B, Heat Shock Protein 15 Kd >gi|7245731|pd... 37 3e-04
pdb|1EG0|A Chain A, Fitting Of Components With Known Struct... 25 1.5
pdb|1CG2|A Chain A, Carboxypeptidase G2 >gi|2780969|pdb|1CG... 24 2.5
pdb|2OCC|A Chain A, Bovine Heart Cytochrome C Oxidase At Th... 23 4.3
pdb|1KYH|A Chain A, Structural Genomics, Hypothetical Prote... 23 5.6
pdb|1MU2|A Chain A, Crystal Structure Of Hiv-2 Reverse Tran... 22 9.6
>pdb|1DM9|B Chain B, Heat Shock Protein 15 Kd
pdb|1DM9|A Chain A, Heat Shock Protein 15 Kd
Length = 133
Score = 37.4 bits (85), Expect = 3e-04
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 1 MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTI 60
+R+DK+L + K R LA +M G V NG +K SK V+ T++L +G +E T+
Sbjct: 9 VRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLR--QGNDERTV 66
Query: 61 L 61
+
Sbjct: 67 I 67
>pdb|1EG0|A Chain A, Fitting Of Components With Known Structure Into An 11.5 A
Cryo-Em Map Of The E.Coli 70s Ribosome
pdb|1C05|A Chain A, Solution Structure Of Ribosomal Protein S4 Delta 41,
Refined With Dipolar Couplings (Minimized Average
Structure
pdb|1C06|A Chain A, Solution Structure Of Ribosomal Protein S4 Delta 41,
Refined With Dipolar Couplings (Ensemble Of 16
Structures)
pdb|1QD7|C Chain C, Partial Model For 30s Ribosomal Subunit
Length = 159
Score = 25.0 bits (53), Expect = 1.5
Identities = 15/49 (30%), Positives = 25/49 (50%), Gaps = 1/49 (2%)
Query: 2 RIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAK-ASKEVKAGDTISL 49
R+D + +GL + R A + G + ++GS S VK G TI++
Sbjct: 52 RLDNLVYRLGLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAV 100
>pdb|1CG2|A Chain A, Carboxypeptidase G2
pdb|1CG2|C Chain C, Carboxypeptidase G2
pdb|1CG2|B Chain B, Carboxypeptidase G2
pdb|1CG2|D Chain D, Carboxypeptidase G2
Length = 393
Score = 24.3 bits (51), Expect = 2.5
Identities = 16/52 (30%), Positives = 24/52 (45%), Gaps = 13/52 (25%)
Query: 22 MCNVGAVWLNGSCAKASKEV-------------KAGDTISLHYLKGIEEYTI 60
M ++ V+L G AKA V K G+ + LH LK ++EY +
Sbjct: 88 MSHMDTVYLKGILAKAPFRVEGDKAYGPGIADDKGGNAVILHTLKLLKEYGV 139
>pdb|2OCC|A Chain A, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2OCC|N Chain N, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1OCR|A Chain A, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCR|N Chain N, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCO|A Chain A, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-Bound
State
pdb|1OCO|N Chain N, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-Bound
State
pdb|1OCC|A Chain A, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|1OCC|N Chain N, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|1OCZ|A Chain A, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
pdb|1OCZ|N Chain N, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
Length = 514
Score = 23.5 bits (49), Expect = 4.3
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 14 KRRVLATDMCNVGAVWLNG 32
KR VL D+ WLNG
Sbjct: 479 KREVLTVDLTTTNLEWLNG 497
>pdb|1KYH|A Chain A, Structural Genomics, Hypothetical Protein In Sigy-Cydd
Intergenic Region
Length = 276
Score = 23.1 bits (48), Expect = 5.6
Identities = 10/31 (32%), Positives = 18/31 (57%)
Query: 25 VGAVWLNGSCAKASKEVKAGDTISLHYLKGI 55
+ AV+L+G+CA+ + + T+ H L I
Sbjct: 237 LNAVYLHGACAELWTDEHSAHTLLAHELSDI 267
>pdb|1MU2|A Chain A, Crystal Structure Of Hiv-2 Reverse Transcriptase
Length = 555
Score = 22.3 bits (46), Expect = 9.6
Identities = 9/16 (56%), Positives = 12/16 (74%)
Query: 29 WLNGSCAKASKEVKAG 44
+ +GSC + SKE KAG
Sbjct: 440 YTDGSCNRQSKEGKAG 455
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,243
Number of Sequences: 13198
Number of extensions: 14753
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 6
length of query: 84
length of database: 2,899,336
effective HSP length: 60
effective length of query: 24
effective length of database: 2,107,456
effective search space: 50578944
effective search space used: 50578944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)