BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646033|ref|NP_208215.1| hypothetical protein
[Helicobacter pylori 26695]
(206 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1ADJ|A Chain A, Histidyl-Trna Synthetase In Complex Wit... 27 1.3
pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (... 25 6.4
pdb|1ASZ|A Chain A, Aspartyl Trna Synthetase (Asprs) (E.C.6... 25 6.4
>pdb|1ADJ|A Chain A, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|B Chain B, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|C Chain C, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|D Chain D, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADY|A Chain A, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|B Chain B, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|C Chain C, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|D Chain D, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1H4V|B Chain B, Histidyl-Trna Synthetase From Thermus Thermophilus (Ligand
Free)
Length = 421
Score = 27.3 bits (59), Expect = 1.3
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 5 IMSLLATLLLASCLPPKGHHSGLVNLYIAHQGQSVRTYWRKVDRGVIAKHNEALKKDPKA 64
I+ A +LL CL G V L + R + R V++ H EAL +D K
Sbjct: 138 ILDAEAVVLLYECLKELGLRRLKVKLSSVGDPED-RARYNAYLREVLSPHREALSEDSKE 196
Query: 65 KLKDPRGPLFMLGSERFMLLWK 86
+L++ + SER L K
Sbjct: 197 RLEENPMRILDSKSERDQALLK 218
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From
Yeast
Length = 487
Score = 25.0 bits (53), Expect = 6.4
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 86 KNRYALAKPQSFRLEPGFYYLDSFSVETQKGVLQSAPGYSYTKNGYDF 133
+N L K + + FY LD F +E + P N YDF
Sbjct: 355 ENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDF 402
>pdb|1ASZ|A Chain A, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp) And Atp
pdb|1ASZ|B Chain B, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp) And Atp
pdb|1ASY|A Chain A, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp)
pdb|1ASY|B Chain B, Aspartyl Trna Synthetase (Asprs) (E.C.6.1.1.12) Complexed
With Transfer Ribonucleic Acid (Trnaasp)
Length = 490
Score = 25.0 bits (53), Expect = 6.4
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 86 KNRYALAKPQSFRLEPGFYYLDSFSVETQKGVLQSAPGYSYTKNGYDF 133
+N L K + + FY LD F +E + P N YDF
Sbjct: 358 ENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDF 405
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.139 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,318,072
Number of Sequences: 13198
Number of extensions: 57134
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 3
length of query: 206
length of database: 2,899,336
effective HSP length: 84
effective length of query: 122
effective length of database: 1,790,704
effective search space: 218465888
effective search space used: 218465888
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)