BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646034|ref|NP_208216.1| hypothetical protein
[Helicobacter pylori 26695]
         (75 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1DK8|A  Chain A, Crystal Structure Of The Rgs-Homologous...    23  6.0
pdb|1EMU|A  Chain A, Structure Of The Axin Rgs-Homologous Do...    23  6.0
pdb|1GXS|A  Chain A, Crystal Structure Of Hydroxynitrile Lya...    23  6.0
pdb|1M7V|A  Chain A, Structure Of A Nitric Oxide Synthase He...    23  7.8

>pdb|1DK8|A Chain A, Crystal Structure Of The Rgs-Homologous Domain Of Axin
          Length = 147

 Score = 23.1 bits (48), Expect = 6.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 41 KKLKSCESARVLQAKIPRGIFESYV 65
          +KL+ C+S    + K+ R I+  Y+
Sbjct: 52 RKLEPCDSNEEKRLKLARAIYRKYI 76



>pdb|1EMU|A Chain A, Structure Of The Axin Rgs-Homologous Domain In Complex
          With A Samp Repeat From Apc
          Length = 132

 Score = 23.1 bits (48), Expect = 6.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 41 KKLKSCESARVLQAKIPRGIFESYV 65
          +KL+ C+S    + K+ R I+  Y+
Sbjct: 46 RKLEPCDSNEEKRLKLARAIYRKYI 70



>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
           Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
           Cyanogenic Enzyme
 pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
           Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
           Cyanogenic Enzyme
          Length = 270

 Score = 23.1 bits (48), Expect = 6.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 31  VHGDAPSCSLKKLKSCESARVLQAKIPRGIFESYVTWSAD 70
           VH +  S  L +    ++A +L A+ P G+  SY   S+D
Sbjct: 82  VHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSSD 121



>pdb|1M7V|A Chain A, Structure Of A Nitric Oxide Synthase Heme Protein From
           Bacillus Subtilis With Tetrahydrofolate And Arginine
           Bound
          Length = 363

 Score = 22.7 bits (47), Expect = 7.8
 Identities = 9/17 (52%), Positives = 13/17 (75%)

Query: 4   QLVQFQGYGSLGLRMGD 20
           QL+++ GY S G R+GD
Sbjct: 129 QLIRYAGYESDGERIGD 145



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.321    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,237
Number of Sequences: 13198
Number of extensions: 12797
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 4
length of query: 75
length of database: 2,899,336
effective HSP length: 51
effective length of query: 24
effective length of database: 2,226,238
effective search space: 53429712
effective search space used: 53429712
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)