BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646035|ref|NP_208217.1| conserved hypothetical
protein [Helicobacter pylori 26695]
         (180 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1CII|    Colicin Ia                                            25  4.0
pdb|2SLI|    Leech Intramolecular Trans-Sialidase Complexed ...    25  5.2
pdb|1EK1|B  Chain B, Crystal Structure Of Murine Soluble Epo...    25  5.2

>pdb|1CII|   Colicin Ia
          Length = 602

 Score = 25.4 bits (54), Expect = 4.0
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 16  NKLVGKKVQEALAK--EKAKAKNQRADKSAFFAGLGYSGMFS 55
           NK +  K + A+A   E  K  +  ++ + F  GLGY+G F+
Sbjct: 483 NKKINAKDRAAIAAALESVKLSDISSNLNRFSRGLGYAGKFT 524



>pdb|2SLI|   Leech Intramolecular Trans-Sialidase Complexed With
           2,7-Anhydro-Neu5ac, The Reaction Product
 pdb|3SLI|   Leech Intramolecular Trans-Sialidase Complexed With
           2,7-Anhydro-Neu5ac Prepared By Soaking With
           3'-Sialyllactose
 pdb|4SLI|   Leech Intramolecular Trans-Sialidase Complexed With
           2-Propenyl-Neu5ac, An Inactive Substrate Analogue
 pdb|1SLI|   Leech Intramolecular Trans-Sialidase Complexed With Dana
 pdb|1SLL|   Sialidase L From Leech Macrobdella Decora
          Length = 679

 Score = 25.0 bits (53), Expect = 5.2
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 56  WNLAYKDSFVLLRHYDFNF-GGRLLERKDPSTILNGFNFKVGYQYAAPVKIKKMGFGVRG 114
           +NL   D+ +  + YD+NF G  L+E K    +     +K     A P     M +    
Sbjct: 377 YNLYQHDTNLTCKQYDYNFSGNNLIESKTDVDVNMNIFYKNSVFKAFPTNYLAMRYSDDE 436

Query: 115 GFQYS 119
           G  +S
Sbjct: 437 GASWS 441



>pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
           Complexed With Ciu Inhibitor
 pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
           Complexed With Cpu Inhibitor
 pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
 pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
           Complexed With Cdu Inhibitor
 pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
           Complexed With Ciu Inhibitor
 pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
           Complexed With Cpu Inhibitor
 pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
 pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
           Complexed With Cdu Inhibitor
          Length = 554

 Score = 25.0 bits (53), Expect = 5.2
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 11  DESEPNKLVGKKVQEALAKEKAKAKNQRADKSAFFAGLGYSGMFSWNLA 59
           D S P + + +   E L KE     ++     A F G  ++G+  WN+A
Sbjct: 296 DSSSPPE-IEEYAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMVWNMA 343



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.324    0.140    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,089,054
Number of Sequences: 13198
Number of extensions: 46656
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 3
length of query: 180
length of database: 2,899,336
effective HSP length: 82
effective length of query: 98
effective length of database: 1,817,100
effective search space: 178075800
effective search space used: 178075800
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)