BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646036|ref|NP_208218.1| histidine-rich, metal
binding polypeptide (hpn) [Helicobacter pylori 26695]
(60 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1D0H|A Chain A, The Hc Fragment Of Tetanus Toxin Comple... 40 5e-05
pdb|1HCD| Hisactophilin (Nmr, 1 Structure) >gi|640444|pdb... 39 1e-04
pdb|1K8W|A Chain A, Crystal Structure Of The E. Coli Pseudo... 38 3e-04
pdb|1D1D|A Chain A, Nmr Solution Structure Of The Capsid Pr... 38 3e-04
pdb|1JR2|A Chain A, Structure Of Uroporphyrinogen Iii Synth... 38 3e-04
pdb|1JPK|A Chain A, Gly156asp Mutant Of Human Urod, Human U... 38 3e-04
pdb|1JPH|A Chain A, Ile260thr Mutant Of Human Urod, Human U... 38 3e-04
pdb|1JPI|A Chain A, Phe232leu Mutant Of Human Urod, Human U... 38 3e-04
pdb|1EY2|A Chain A, Human Homogentisate Dioxygenase With Fe... 37 6e-04
pdb|1JXI|A Chain A, 4-Amino-5-Hydroxymethyl-2-Methylpyrimid... 36 0.001
pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad... 32 0.011
pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) ... 32 0.018
pdb|1MB1| Mbp1 From Saccharomyces Cerevisiae 30 0.053
pdb|1KR4|A Chain A, Structure Genomics, Protein Tm1056, Cuta 30 0.069
pdb|1K7K|A Chain A, Putative Ribosomal Protein 30 0.069
pdb|1KKL|H Chain H, L.Casei HprkP IN COMPLEX WITH B.SUBTILI... 29 0.090
pdb|1GZU|A Chain A, Crystal Structure Of Human Nicotinamide... 29 0.090
pdb|1JI7|A Chain A, Crystal Structure Of Tel Sam Polymer >g... 29 0.090
pdb|1KP5|A Chain A, Cyclic Green Fluorescent Protein >gi|23... 29 0.090
pdb|1KKM|H Chain H, L.Casei HprkP IN COMPLEX WITH B.SUBTILI... 29 0.090
pdb|1KKX|A Chain A, Solution Structure Of The Dna-Binding D... 29 0.12
pdb|1A02|N Chain N, Structure Of The Dna Binding Domains Of... 29 0.12
pdb|1KXU| Cyclin H, A Positive Regulatory Subunit Of Cdk ... 29 0.12
pdb|1JDQ|A Chain A, Solution Structure Of Tm006 Protein Fro... 28 0.15
pdb|1EHW|A Chain A, Human Nucleoside Diphosphate Kinase 4 >... 28 0.15
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domai... 28 0.15
pdb|1FG5|N Chain N, Crystal Structure Of Bovine Alpha-1,3-G... 28 0.15
pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinosit... 28 0.15
pdb|1E42|B Chain B, Beta2-Adaptin Appendage Domain, From Cl... 28 0.15
pdb|1HE8|A Chain A, Ras G12v - Pi 3-Kinase Gamma Complex 28 0.15
pdb|1FI4|A Chain A, The X-Ray Crystal Structure Of Mevalona... 28 0.15
pdb|1IG3|A Chain A, Mouse Thiamin Pyrophosphokinase Complex... 28 0.15
pdb|1IW5|A Chain A, Solution Structure Of The Bola-Like Pro... 28 0.15
pdb|1JB1|A Chain A, Lactobacillus Casei HprkP BOUND TO PHOS... 28 0.15
pdb|1BB9| Crystal Structure Of The Sh3 Domain From Rat Am... 28 0.15
pdb|1CBF| The X-Ray Structure Of A Cobalamin Biosynthetic... 28 0.15
pdb|1DTO|A Chain A, Crystal Structure Of The Complete Trans... 28 0.15
pdb|1GYU|A Chain A, Gamma-Adaptin Appendage Domain From Cla... 28 0.15
pdb|1L9X|B Chain B, Structure Of Gamma-Glutamyl Hydrolase >... 28 0.15
pdb|2LBD| Ligand-Binding Domain Of The Human Retinoic Aci... 28 0.15
pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholi... 28 0.15
pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer 28 0.15
pdb|1FV3|A Chain A, The Hc Fragment Of Tetanus Toxin Comple... 28 0.15
pdb|1JPE|A Chain A, Crystal Structure Of Dsbd-Alpha; The N-... 28 0.15
pdb|1L2J|A Chain A, Human Estrogen Receptor Beta Ligand-Bin... 28 0.15
pdb|1G8O|A Chain A, Crystallographic Structure Of The Nativ... 28 0.15
pdb|1KZF|A Chain A, Crystal Structure Of The Acyl-Homoserin... 28 0.15
pdb|1K0R|A Chain A, Crystal Structure Of Mycobacterium Tube... 28 0.15
pdb|1GKL|A Chain A, S954a Mutant Of The Feruloyl Esterase M... 28 0.15
pdb|1KU1|A Chain A, Crystal Structure Of The Sec7 Domain Of... 28 0.15
pdb|1A9U| The Complex Structure Of The Map Kinase P38SB20... 28 0.15
pdb|1JJR|A Chain A, The Three-Dimensional Structure Of The ... 28 0.15
pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholi... 28 0.15
pdb|1J6Y|A Chain A, Solution Structure Of Pin1at From Arabi... 28 0.15
pdb|1M1M|A Chain A, X-Ray Crystal Structure Of Mycobacteriu... 28 0.15
pdb|1E17|A Chain A, Solution Structure Of The Dna Binding D... 28 0.15
pdb|1GKK|A Chain A, Feruloyl Esterase Domain Of Xyny From C... 28 0.15
pdb|1LBD| Ligand-Binding Domain Of The Human Nuclear Rece... 28 0.15
pdb|1P38| The Structure Of The Map Kinase P38 At 2.1 Angs... 28 0.15
pdb|1JE3|A Chain A, Solution Structure Of Ec005 From Escher... 28 0.15
pdb|1I39|A Chain A, Rnase Hii From Archaeoglobus Fulgidus >... 28 0.15
pdb|1JAK|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexo... 28 0.20
pdb|1AMX| Collagen-Binding Domain From A Staphylococcus A... 28 0.20
pdb|1J6O|A Chain A, Crystal Structure Of Conserved Hypothet... 28 0.20
pdb|1G7K|A Chain A, Crystal Structure Of Dsred, A Red Fluor... 28 0.20
pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal... 28 0.26
pdb|1KKL|A Chain A, L.Casei HprkP IN COMPLEX WITH B.SUBTILI... 28 0.26
pdb|1ESJ|A Chain A, Crystal Structure Of Thiazole Kinase Mu... 28 0.26
pdb|1I4W|A Chain A, The Crystal Structure Of The Transcript... 28 0.26
pdb|1KNA|A Chain A, Chromo Domain Of Hp1 Complexed With His... 28 0.26
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S >gi... 28 0.26
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic ... 28 0.26
pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima 28 0.26
pdb|1MFQ|C Chain C, Crystal Structure Analysis Of A Ternary... 28 0.26
pdb|1KZG|A Chain A, Dbscdc42(Y889f) >gi|20151150|pdb|1KZG|C... 27 0.34
pdb|1LB1|A Chain A, Crystal Structure Of The Dbl And Plecks... 27 0.34
pdb|1IWG|A Chain A, Crystal Structure Of Bacterial Multidru... 27 0.34
pdb|1KZ7|A Chain A, Crystal Structure Of The DhPH FRAGMENT ... 27 0.34
pdb|1K7L|A Chain A, The 2.5 Angstrom Resolution Crystal Str... 27 0.34
pdb|1F2V|A Chain A, Crystal Structure Analysis Of Precorrin... 27 0.34
pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae N-Ace... 27 0.34
pdb|1SKN|P Chain P, The Binding Domain Of Skn-1 In Complex ... 27 0.34
pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Aut... 27 0.45
pdb|1NED|A Chain A, Crystal Structure Of Hslv (Clpq) At 3.8... 27 0.45
pdb|1F6L|L Chain L, Variable Light Chain Dimer Of Anti-Ferr... 27 0.45
pdb|1BPR| Nmr Structure Of The Substrate Binding Domain O... 27 0.45
pdb|1HSK|A Chain A, Crystal Structure Of S. Aureus Murb 27 0.45
pdb|1L8W|A Chain A, Crystal Structure Of Lyme Disease Varia... 27 0.45
pdb|1QFG|A Chain A, E. Coli Ferric Hydroxamate Receptor (Fh... 27 0.45
pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Sy... 27 0.45
pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive... 27 0.45
pdb|2IF1| Human Translation Initiation Factor Eif1, Nmr, ... 27 0.45
pdb|1FI1|A Chain A, Fhua In Complex With Lipopolysaccharide... 27 0.45
pdb|1HW4|A Chain A, Structure Of Thymidylate Synthase Sugge... 27 0.45
pdb|1D8W|D Chain D, L-Rhamnose Isomerase >gi|10835502|pdb|1... 27 0.45
pdb|1C3Q|X Chain X, Crystal Structure Of Native Thiazole Ki... 27 0.45
pdb|1PSZ|A Chain A, Pneumococcal Surface Antigen Psaa 27 0.45
pdb|1QFF|A Chain A, E. Coli Ferric Hydroxamate Uptake Recep... 27 0.45
pdb|1IFQ|B Chain B, Sec22b N-Terminal Domain >gi|14278236|p... 27 0.45
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Cha... 27 0.45
pdb|1NQB|A Chain A, Trivalent Antibody Fragment >gi|2392475... 27 0.45
pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain Fr... 27 0.45
pdb|1JE8|A Chain A, Two-Component Response Regulator NarlDN... 27 0.45
pdb|1DD9|A Chain A, Structure Of The Dnag Catalytic Core >g... 27 0.45
pdb|1HXV|A Chain A, Ppiase Domain Of The Mycoplasma Genital... 27 0.45
pdb|1D7Q|B Chain B, Human Translation Initiation Factor Eif1a 27 0.45
pdb|1F2X|L Chain L, Structure Of The Single-Domain Camelid ... 27 0.59
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Co... 27 0.59
pdb|1KIC|A Chain A, Inosine-Adenosine-Guanosine Preferring ... 27 0.59
pdb|1K6L|M Chain M, Photosynethetic Reaction Center From Rh... 27 0.59
pdb|1HP0|A Chain A, Crystal Structure Of An Inosine-Adenosi... 27 0.59
pdb|1GQF|A Chain A, Crystal Structure Of Human Procaspase-7... 27 0.59
pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpa... 27 0.59
pdb|1DE5|A Chain A, L-Rhamnose Isomerase >gi|10120982|pdb|1... 27 0.59
pdb|1JYM|A Chain A, Crystals Of Peptide Deformylase From Pl... 27 0.59
pdb|1G8X|A Chain A, Structure Of A Genetically Engineered M... 26 0.77
pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of P... 26 0.77
pdb|1JLJ|A Chain A, 1.6 Angstrom Crystal Structure Of The H... 26 0.77
pdb|1TNM| Titin Module M5 (Connectin) (Nmr, Minimized Ave... 26 0.77
pdb|1B6U| Crystal Structure Of The Human Killer Cell Inhi... 26 0.77
pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif) ... 26 0.77
pdb|1INN|A Chain A, Crystal Structure Of D. Radiodurans Lux... 26 0.77
pdb|1D2D|A Chain A, Hamster Eprs Second Repeated Element; N... 26 0.77
pdb|1PME| Structure Of Penta Mutant Human Erk2 Map Kinase... 26 0.77
pdb|1NCT| Titin Module M5, N-Terminally Extended, Nmr >gi... 26 0.77
pdb|1I1C|A Chain A, Non-Fcrn Binding Fc Fragment Of Rat Igg... 26 0.77
pdb|1QOM|A Chain A, Murine Inducible Nitric Oxide Synthase ... 26 0.77
pdb|1TIT| Titin, Ig Repeat 27, Nmr, Minimized Average Str... 26 0.77
pdb|1J5Y|A Chain A, Crystal Structure Of Transcriptional Re... 26 0.77
pdb|1BPV| Titin Module A71 From Human Cardiac Muscle, Nmr... 26 0.77
pdb|1I3O|B Chain B, Crystal Structure Of The Complex Of Xia... 26 1.00
pdb|1D1R|A Chain A, Nmr Solution Structure Of The Product O... 26 1.00
pdb|1PLS| Pleckstrin (N-Terminal Pleckstrin Homology Doma... 26 1.00
pdb|1BGQ| Radicicol Bound To The Atp Binding Site Of The ... 26 1.00
pdb|1H6Y|A Chain A, The Role Of Conserved Amoni Acids In Th... 26 1.00
pdb|1MHC|A Chain A, Model Of Mhc Class I H2-M3 With Nonapep... 26 1.00
pdb|1H6X|A Chain A, The Role Of Conserved Amoni Acids In Th... 26 1.00
pdb|1MGP|A Chain A, Hypothetical Protein Tm841 From Thermot... 25 1.3
pdb|1J6W|A Chain A, Crystal Structure Of Haemophilus Influe... 25 1.3
pdb|3GCB| Gal6 (Yeast Bleomycin Hydrolase) Mutant C73aDEL... 25 1.3
pdb|1KID| Groel (Hsp60 Class) Fragment (Apical Domain) Co... 25 1.3
pdb|1M0V|A Chain A, Nmr Structure Of The Type Iii Secretory... 25 1.3
pdb|1JU3|A Chain A, Bacterial Cocaine Esterase Complex With... 25 1.3
pdb|1QUV|A Chain A, Crystal Structure Of The Rna Directed R... 25 1.3
pdb|1ILG|A Chain A, Crystal Structure Of Apo Human Pregnane... 25 1.3
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gram... 25 1.3
pdb|1K74|D Chain D, The 2.3 Angstrom Resolution Crystal Str... 25 1.3
pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,... 25 1.3
pdb|1A4H| Structure Of The N-Terminal Domain Of The Yeast... 25 1.3
pdb|1QMH|B Chain B, Crystal Structure Of Rna 3'-Terminal Ph... 25 1.3
pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamm... 25 1.3
pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritim... 25 1.3
pdb|1QRJ|A Chain A, Solution Structure Of Htlv-I Capsid Pro... 25 1.3
pdb|1JFN|A Chain A, Solution Structure Of Human Apolipoprot... 25 1.3
pdb|1FSZ| Crystal Structure Of The Cell-Division Protein ... 25 1.3
pdb|1MSZ|A Chain A, Solution Structure Of The R3h Domain Fr... 25 1.3
pdb|1QMI|A Chain A, Crystal Structure Of Rna 3'-Terminal Ph... 25 1.3
pdb|1IBX|A Chain A, Nmr Structure Of Dff40 And Dff45 N-Term... 25 1.3
pdb|1HUF|A Chain A, Crystal Structure Of The N-Terminal Dom... 25 1.3
pdb|1JFZ|B Chain B, Crystal Structure Of Mn(Ii)-Complex Of ... 25 1.3
pdb|1A1V|A Chain A, Hepatitis C Virus Ns3 Helicase Domain C... 25 1.3
pdb|1JH7|A Chain A, Semi-Reduced Inhibitor-Bound Cyclic Nuc... 25 1.3
pdb|1A1R|B Chain B, Hcv Ns3 Protease Domain:ns4a Peptide Co... 25 1.3
pdb|1J6U|A Chain A, Crystal Structure Of Udp-N-Acetylmurama... 25 1.3
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-A... 25 1.3
pdb|1J6X|B Chain B, Crystal Structure Of Helicobacter Pylor... 25 1.3
pdb|1J5U|A Chain A, Crystal Structure Of Conserved Hypothet... 25 1.3
pdb|1A6R| Gal6 (Yeast Bleomycin Hydrolase) Mutant C73a 25 1.3
pdb|1A1R|A Chain A, Hcv Ns3 Protease Domain:ns4a Peptide Co... 25 1.3
pdb|1BC9| Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Ave... 25 1.7
pdb|1J8C|A Chain A, Solution Structure Of The Ubiquitin-Lik... 25 1.7
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A ... 25 1.7
pdb|1E7Z|A Chain A, Crystal Structure Of The Emap2RNA BINDI... 25 1.7
pdb|1HZT|A Chain A, Crystal Structure Of Metal-Free Isopent... 25 1.7
pdb|1L3A|C Chain C, Structure Of The Plant Transcriptional ... 25 1.7
pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ BEF3-Bound R... 25 1.7
pdb|1GD0|A Chain A, Human Macrophage Migration Inhibitory F... 25 1.7
pdb|1HX3|B Chain B, Crystal Structure Of E.Coli Isopentenyl... 25 1.7
pdb|1A1W| Fadd Death Effector Domain, F25y Mutant, Nmr Mi... 25 1.7
pdb|1FXX|A Chain A, The Structure Of Exonuclease I Suggests... 25 1.7
pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb... 25 1.7
pdb|1KBU|A Chain A, Cre Recombinase Bound To A Loxp Hollida... 25 1.7
pdb|1C5K|A Chain A, The Structure Of Tolb, An Essential Com... 25 1.7
pdb|1K3K|A Chain A, Solution Structure Of A Bcl-2 Homolog F... 25 1.7
pdb|1LXL| Nmr Structure Of Bcl-Xl, An Inhibitor Of Progra... 25 1.7
pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Compl... 25 1.7
pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Trypar... 25 1.7
pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransf... 25 1.7
pdb|1RRB| The Ras-Binding Domain Of Raf-1 From Rat, Nmr, ... 25 1.7
pdb|1KXR|B Chain B, Crystal Structure Of Calcium-Bound Prot... 25 1.7
pdb|1JID|A Chain A, Human Srp19 In Complex With Helix 6 Of ... 25 1.7
pdb|1DDF| Fas Death Domain, Nmr, Minimized Average Structure 25 1.7
pdb|1KKD|A Chain A, Solution Structure Of The Calmodulin Bi... 25 1.7
pdb|1BXL|A Chain A, Structure Of Bcl-XlBAK PEPTIDE COMPLEX,... 25 1.7
pdb|1LN4|A Chain A, Crystal Structure Of E. Coli Yhby 25 1.7
pdb|1EFH|B Chain B, Crystal Structure Of The Human Hydroxys... 25 1.7
pdb|1F0K|A Chain A, The 1.9 Angstrom Crystal Structure Of E... 25 1.7
pdb|1MM4|A Chain A, Solution Nmr Structure Of The Outer Mem... 25 1.7
pdb|1KEZ|A Chain A, Crystal Structure Of The Macrocycle-For... 25 1.7
pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adapt... 25 1.7
pdb|1FL0|A Chain A, Crystal Structure Of The Emap2RNA-Bindi... 25 1.7
pdb|1K99|A Chain A, Solution Structure Of The First Hmg Box... 25 1.7
pdb|1UXD| Fructose Repressor Dna-Binding Domain, Nmr, 34 ... 25 1.7
pdb|1MC0|A Chain A, Regulatory Segment Of Mouse 3',5'-Cycli... 25 1.7
pdb|1JH3|A Chain A, Solution Structure Of Tyrosyl-Trna Synt... 25 1.7
pdb|1FNO|A Chain A, Peptidase T (Tripeptidase) 25 1.7
pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domai... 25 1.7
pdb|1K8M|A Chain A, Solution Structure Of The Lipoic Acid-B... 25 1.7
pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79a... 25 1.7
pdb|1L8Y|A Chain A, Solution Structure Of Hmg Box 5 In Huma... 25 1.7
pdb|1A1Z| Fadd Death Effector Domain, F25g Mutant, Nmr Mi... 25 1.7
pdb|1K92|A Chain A, Crystal Structure Of Uncomplexed E. Col... 25 1.7
pdb|1MMU|A Chain A, Crystal Structure Of Galactose Mutarota... 25 1.7
pdb|1K2E|A Chain A, Crystal Structure Of A Nudix Protein Fr... 25 1.7
pdb|1GPP|A Chain A, Crystal Structure Of The S.Cerevisiae H... 25 2.2
pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidas... 25 2.2
pdb|2FCP|A Chain A, Ferric Hydroxamate Uptake Receptor (Fhu... 25 2.2
pdb|1J5X|A Chain A, Crystal Structure Of Conserved Hypothet... 25 2.2
pdb|1FCP|A Chain A, Ferric Hydroxamate Uptake Receptor (Fhu... 25 2.2
pdb|1GV3|A Chain A, The 2.0 Angstrom Resolution Structure O... 25 2.2
pdb|1C2P|B Chain B, Hepatitis C Virus Ns5b Rna-Dependent Rn... 25 2.2
pdb|1FVR|A Chain A, Tie2 Kinase Domain >gi|15988251|pdb|1FV... 25 2.2
pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structur... 24 2.9
pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Sub... 24 2.9
pdb|1J5P|A Chain A, Crystal Structure Of Conserved Hypothet... 24 2.9
pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Co... 24 2.9
pdb|1GKZ|A Chain A, Branched-Chain Alpha-Ketoacid Dehydroge... 24 2.9
pdb|1TOA|A Chain A, Periplasmic Zinc Binding Protein Troa F... 24 2.9
pdb|1EGU|A Chain A, Crystal Structure Of Streptococcus Pneu... 24 3.8
pdb|1E5K|A Chain A, Crystal Structure Of The Molybdenum Cof... 24 3.8
pdb|1KW4|A Chain A, Polyhomeotic Sam Domain Structure 24 3.8
pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Dom... 24 3.8
pdb|1G5H|D Chain D, Crystal Structure Of The Accessory Subu... 24 3.8
pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34 - A Nove... 24 3.8
pdb|1MO0|A Chain A, Structural Genomics Of Caenorhabditis E... 24 3.8
pdb|1JML|A Chain A, Conversion Of Monomeric Protein L To An... 24 3.8
pdb|1G5I|D Chain D, Crystal Structure Of The Accessory Subu... 24 3.8
pdb|2HFH| The Nmr Structures Of A Winged Helix Protein: G... 24 3.8
pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant O... 24 3.8
pdb|1J5W|A Chain A, Crystal Structure Of Glycyl-Trna Synthe... 24 3.8
pdb|1K28|A Chain A, The Structure Of The Bacteriophage T4 C... 24 3.8
pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic ... 23 5.0
pdb|1K51|A Chain A, A G55a Mutation Induces 3d Domain Swapp... 23 5.0
pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome 23 5.0
pdb|3HAD|A Chain A, Biochemical Characterization And Struct... 23 5.0
pdb|1JT0|A Chain A, Crystal Structure Of A Cooperative Qacr... 23 5.0
pdb|1K53|A Chain A, Monomeric Protein L B1 Domain With A G1... 23 5.0
pdb|1K52|B Chain B, Monomeric Protein L B1 Domain With A K5... 23 5.0
pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic ... 23 5.0
pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Do... 23 5.0
pdb|1DF9|A Chain A, Dengue Virus Ns3-Protease Complexed Wit... 23 5.0
pdb|1HZ5|B Chain B, Crystal Structures Of The B1 Domain Of ... 23 5.0
pdb|1MHX|A Chain A, Crystal Structures Of The Redesigned Pr... 23 5.0
pdb|1JUS|A Chain A, Crystal Structure Of The Multidrug Bind... 23 5.0
pdb|1ASS| Apical Domain Of The Chaperonin From Thermoplas... 23 5.0
pdb|1MI0|A Chain A, Crystal Structure Of The Redesigned Pro... 23 5.0
pdb|1GX3|A Chain A, M. Smegmatis Arylamine N-Acetyl Transfe... 23 6.5
pdb|1LR0|A Chain A, Pseudomonas Aeruginosa Tola Domain Iii,... 23 6.5
pdb|1E5E|A Chain A, Methionine Gamma-Lyase (Mgl) From Trich... 23 6.5
pdb|1JXQ|A Chain A, Structure Of Cleaved, Card Domain Delet... 23 6.5
pdb|1JT7|D Chain D, Human Acidic Fibroblast Growth Factor. ... 23 6.5
pdb|1DNY|A Chain A, Solution Structure Of Pcp, A Prototype ... 23 6.5
pdb|1K5V|A Chain A, Human Acidic Fibroblast Growth Factor. ... 23 6.5
pdb|1E52|A Chain A, Solution Structure Of Escherichia Coli ... 23 6.5
pdb|1IM4|A Chain A, Crystal Structure Of A Dinb Homolog (Db... 23 6.5
pdb|1GOL| Coordinates Of Rat Map Kinase Erk2 With An Argi... 23 6.5
pdb|1K5U|C Chain C, Human Acidic Fibroblast Growth Factor. ... 23 6.5
pdb|1J5H|A Chain A, Solution Structure Of Apo-Neocarzinosta... 23 6.5
pdb|1K9E|A Chain A, Crystal Structure Of A Mutated Family-6... 23 6.5
pdb|1J6P|A Chain A, Crystal Structure Of Conserved Hypothet... 23 6.5
pdb|1JS1|X Chain X, Crystal Structure Of A New Transcarbamy... 23 6.5
pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococc... 23 6.5
pdb|1J5S|A Chain A, Crystal Structure Of Uronate Isomerase ... 23 6.5
pdb|1JTC|D Chain D, Human Acidic Fibroblast Growth Factor. ... 23 6.5
pdb|1J5R|A Chain A, Crystal Structure Of Alcohol Dehydrogen... 23 6.5
pdb|1QOJ|B Chain B, Crystal Structure Of E.Coli Uvrb C-Term... 23 6.5
pdb|1HY5|B Chain B, Crystal Structure Of The Catalytic Doma... 23 6.5
pdb|1GPO|H Chain H, Crystal Structure Of The Rationally Des... 23 6.5
pdb|1IBA| Glucose Permease (Domain Iib), Nmr, 11 Structures 23 6.5
pdb|1JT5|A Chain A, Human Acidic Fibroblast Growth Factor. ... 23 6.5
pdb|1KQ4|C Chain C, Crystal Structure Of Thy1-Complementing... 23 6.5
pdb|1I5N|D Chain D, Crystal Structure Of The P1 Domain Of C... 23 6.5
pdb|1JT4|A Chain A, Human Acidic Fibroblast Growth Factor. ... 23 6.5
pdb|1J6R|A Chain A, Crystal Structure Of Hypothetical Prote... 23 6.5
pdb|1J5T|A Chain A, Crystal Structure Of Indole-3-Glycerol ... 23 6.5
pdb|1TOL|A Chain A, Fusion Of N-Terminal Domain Of The Mino... 23 6.5
pdb|1JMA|B Chain B, Crystal Structure Of The Herpes Simplex... 23 6.5
pdb|1VIN| Bovine Cyclin A3 23 6.5
pdb|1EZT|A Chain A, High-Resolution Solution Structure Of F... 23 6.5
pdb|1ERK| Structure Of Signal-Regulated Kinase >gi|582250... 23 6.5
pdb|1KQ3|A Chain A, Crystal Structure Of Glycerol Dehydroge... 23 6.5
pdb|1J6N|A Chain A, Crystal Structure Of Cysteine Synthase ... 23 6.5
pdb|1I7D|A Chain A, Noncovalent Complex Of E.Coli Dna Topoi... 23 6.5
pdb|2G3P|A Chain A, Structure Of The N-Terminal Two Domains... 23 6.5
pdb|1K6Z|A Chain A, Crystal Structure Of The Yersinia Secre... 23 6.5
pdb|1K9D|A Chain A, The 1.7 A Crystal Structure Of Alpha-D-... 23 6.5
pdb|1DK5|A Chain A, Crystal Structure Of Annexin 24(Ca32) F... 23 6.5
pdb|1D4B|A Chain A, Cide-N Domain Of Human Cide-B 23 6.5
pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adapt... 23 6.5
pdb|1B62|B Chain B, Mutl Complexed With Adp >gi|5107473|pdb... 23 6.5
pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminope... 23 6.5
pdb|1JT3|A Chain A, Human Acidic Fibroblast Growth Factor. ... 23 6.5
pdb|1L3W|A Chain A, C-Cadherin Ectodomain 23 6.5
pdb|1J5V|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluc... 23 6.5
pdb|1O0U|A Chain A, Crystal Structure Of Putative Glycerate... 23 6.5
pdb|1JQZ|A Chain A, Human Acidic Fibroblast Growth Factor. ... 23 6.5
pdb|1HES|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adapt... 23 6.5
pdb|1L6N|A Chain A, Structure Of The N-Terminal 283-Residue... 23 6.5
pdb|1KN6|A Chain A, Solution Structure Of The Mouse Prohorm... 23 6.5
pdb|2ERK| Phosphorylated Map Kinase Erk2 23 6.5
pdb|1JMA|A Chain A, Crystal Structure Of The Herpes Simplex... 23 8.5
pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copp... 23 8.5
pdb|1DI0|A Chain A, Crystal Structure Of Lumazine Synthase ... 23 8.5
>pdb|1D0H|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With
N-Acetyl- Galactosamine
Length = 469
Score = 40.0 bits (92), Expect = 5e-05
Identities = 16/24 (66%), Positives = 16/24 (66%), Gaps = 5/24 (20%)
Query: 17 HTHHHHYHGGEHHHHHHSSHHEEG 40
H HHHH HHHHHHSS H EG
Sbjct: 3 HGHHHH-----HHHHHHSSGHIEG 21
Score = 38.9 bits (89), Expect = 1e-04
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 10 GHHHHHHHTHHHHYHGGEHHHHHHSSHHEE 39
GH HHHHH HHH+H H H +EE
Sbjct: 2 GHGHHHHH--HHHHHSSGHIEGRHMLDNEE 29
Score = 35.8 bits (81), Expect = 0.001
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 8 HGGHHHHHHHTHHHHYHGGEH 28
HG HHHHHHH H + G H
Sbjct: 3 HGHHHHHHHHHHSSGHIEGRH 23
Score = 31.6 bits (70), Expect = 0.018
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 25 GGEHHHHHHSSHHEEG 40
G HHHHHH HH G
Sbjct: 2 GHGHHHHHHHHHHSSG 17
Score = 27.7 bits (60), Expect = 0.26
Identities = 10/20 (50%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 1 MAHHEEQHGGHHHHHHHTHH 20
M H H HHHHHH + H
Sbjct: 1 MGHGHHHH--HHHHHHSSGH 18
Score = 25.8 bits (55), Expect = 1.00
Identities = 11/31 (35%), Positives = 11/31 (35%), Gaps = 10/31 (32%)
Query: 29 HHHHHSSHHEEGCCSTSDSHHQEEGCCHGHH 59
H HHH HH HH G G H
Sbjct: 3 HGHHHHHHH----------HHHSSGHIEGRH 23
Score = 25.8 bits (55), Expect = 1.00
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 4 HEEQHGGHHHHHHHTHHHHYH 24
H H HHHHH H H
Sbjct: 3 HGHHHHHHHHHHSSGHIEGRH 23
>pdb|1HCD| Hisactophilin (Nmr, 1 Structure)
pdb|1HCE| Hisactophilin (Nmr, Minimized Average Structure)
Length = 118
Score = 38.9 bits (89), Expect = 1e-04
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 4 HEEQHGGH-----HHHHHHTHHHHYHGGEHHHHHHSSHHEE 39
H E HGG HHHH+ + HH H HH H + EE
Sbjct: 75 HLEHHGGKVSIKGHHHHYISADHHGHVSTKEHHDHDTTFEE 115
Score = 37.7 bits (86), Expect = 3e-04
Identities = 18/53 (33%), Positives = 27/53 (49%), Gaps = 5/53 (9%)
Query: 4 HEEQHGGHHHHHHHTHHH-HYHGG----EHHHHHHSSHHEEGCCSTSDSHHQE 51
H++ + HH H H+ H +HGG + HHHH+ S G ST + H +
Sbjct: 58 HKQVYLSHHLHGDHSLFHLEHHGGKVSIKGHHHHYISADHHGHVSTKEHHDHD 110
Score = 33.1 bits (74), Expect = 0.006
Identities = 22/77 (28%), Positives = 25/77 (31%), Gaps = 26/77 (33%)
Query: 8 HGGHHHHHHHTHHHHYHG--------------GEH------HHHH------HSSHHEEGC 41
H GHH HH H H ++ G G+H HH H H HH
Sbjct: 24 HHGHHDHHTHFHVENHGGKVALKTHCGKYLSIGDHKQVYLSHHLHGDHSLFHLEHHGGKV 83
Query: 42 CSTSDSHHQEEGCCHGH 58
HH HGH
Sbjct: 84 SIKGHHHHYISADHHGH 100
Score = 33.1 bits (74), Expect = 0.006
Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 19/66 (28%)
Query: 13 HHHHHTHHHHYHGGEH------------------HHHHHSSHHEEGCCSTSD-SHHQEEG 53
HH HH HH H+H H H + SHH G S HH +
Sbjct: 24 HHGHHDHHTHFHVENHGGKVALKTHCGKYLSIGDHKQVYLSHHLHGDHSLFHLEHHGGKV 83
Query: 54 CCHGHH 59
GHH
Sbjct: 84 SIKGHH 89
Score = 22.7 bits (47), Expect = 8.5
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 5/24 (20%)
Query: 18 THHHHYHGGEH-----HHHHHSSH 36
+HH H+ E HH HH H
Sbjct: 8 SHHGHFLSAEGEAVKTHHGHHDHH 31
>pdb|1K8W|A Chain A, Crystal Structure Of The E. Coli Pseudouridine Synthase
Trub Bound To A T Stem-Loop Rna
Length = 327
Score = 37.7 bits (86), Expect = 3e-04
Identities = 15/22 (68%), Positives = 15/22 (68%), Gaps = 5/22 (22%)
Query: 19 HHHHYHGGEHHHHHHSSHHEEG 40
HHHH HHHHHHSS H EG
Sbjct: 3 HHHH-----HHHHHHSSGHIEG 19
Score = 33.1 bits (74), Expect = 0.006
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 10 GHHHHHHHTHHHHYHGGEHHHHH 32
GHHHHHH HHH+ G H
Sbjct: 2 GHHHHHH---HHHHSSGHIEGRH 21
Score = 32.7 bits (73), Expect = 0.008
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 9 GGHHHHHHHTHHHHYHGGEH 28
G HHHHHHH H + G H
Sbjct: 2 GHHHHHHHHHHSSGHIEGRH 21
Score = 30.4 bits (67), Expect = 0.041
Identities = 11/21 (52%), Positives = 12/21 (56%), Gaps = 5/21 (23%)
Query: 1 MAHHEEQHGGHHHHHHHTHHH 21
M HH HHHHHHH+ H
Sbjct: 1 MGHHH-----HHHHHHHSSGH 16
Score = 28.9 bits (63), Expect = 0.12
Identities = 10/15 (66%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
Query: 26 GEHHHHHHSSHHEEG 40
G HHHHHH HH G
Sbjct: 2 GHHHHHHH-HHHSSG 15
Score = 25.4 bits (54), Expect = 1.3
Identities = 12/31 (38%), Positives = 12/31 (38%), Gaps = 12/31 (38%)
Query: 29 HHHHHSSHHEEGCCSTSDSHHQEEGCCHGHH 59
HHHHH HH HH G G H
Sbjct: 3 HHHHH--HH----------HHHSSGHIEGRH 21
>pdb|1D1D|A Chain A, Nmr Solution Structure Of The Capsid Protein From Rous
Sarcoma Virus
Length = 262
Score = 37.7 bits (86), Expect = 3e-04
Identities = 15/22 (68%), Positives = 15/22 (68%), Gaps = 5/22 (22%)
Query: 19 HHHHYHGGEHHHHHHSSHHEEG 40
HHHH HHHHHHSS H EG
Sbjct: 2 HHHH-----HHHHHHSSGHIEG 18
Score = 34.7 bits (78), Expect = 0.002
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 10 GHHHHHHHTHHHHYHGGEHHHHH 32
GHHHHHH HHHH G H+
Sbjct: 1 GHHHHHH--HHHHSSGHIEGRHN 21
Score = 30.0 bits (66), Expect = 0.053
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 8 HGGHHHHHHHTHHH 21
H HHHHHHH+ H
Sbjct: 2 HHHHHHHHHHSSGH 15
Score = 28.9 bits (63), Expect = 0.12
Identities = 10/15 (66%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
Query: 26 GEHHHHHHSSHHEEG 40
G HHHHHH HH G
Sbjct: 1 GHHHHHHH-HHHSSG 14
Score = 25.0 bits (53), Expect = 1.7
Identities = 12/32 (37%), Positives = 12/32 (37%), Gaps = 13/32 (40%)
Query: 28 HHHHHHSSHHEEGCCSTSDSHHQEEGCCHGHH 59
HHHHHH H HH G G H
Sbjct: 2 HHHHHH--H-----------HHHSSGHIEGRH 20
Score = 24.3 bits (51), Expect = 2.9
Identities = 10/22 (45%), Positives = 10/22 (45%), Gaps = 3/22 (13%)
Query: 3 HHEEQHGGHHHHHHHTHHHHYH 24
HH H HHHHH H H
Sbjct: 2 HH---HHHHHHHHSSGHIEGRH 20
>pdb|1JR2|A Chain A, Structure Of Uroporphyrinogen Iii Synthase
pdb|1JR2|B Chain B, Structure Of Uroporphyrinogen Iii Synthase
Length = 286
Score = 37.7 bits (86), Expect = 3e-04
Identities = 15/22 (68%), Positives = 15/22 (68%), Gaps = 5/22 (22%)
Query: 19 HHHHYHGGEHHHHHHSSHHEEG 40
HHHH HHHHHHSS H EG
Sbjct: 3 HHHH-----HHHHHHSSGHIEG 19
Score = 33.1 bits (74), Expect = 0.006
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 10 GHHHHHHHTHHHHYHGGEHHHHHH 33
GHHHHHH HH+H H H
Sbjct: 2 GHHHHHH----HHHHSSGHIEGRH 21
Score = 32.7 bits (73), Expect = 0.008
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 9 GGHHHHHHHTHHHHYHGGEH 28
G HHHHHHH H + G H
Sbjct: 2 GHHHHHHHHHHSSGHIEGRH 21
Score = 30.4 bits (67), Expect = 0.041
Identities = 11/21 (52%), Positives = 12/21 (56%), Gaps = 5/21 (23%)
Query: 1 MAHHEEQHGGHHHHHHHTHHH 21
M HH HHHHHHH+ H
Sbjct: 1 MGHHH-----HHHHHHHSSGH 16
Score = 28.9 bits (63), Expect = 0.12
Identities = 10/15 (66%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
Query: 26 GEHHHHHHSSHHEEG 40
G HHHHHH HH G
Sbjct: 2 GHHHHHHH-HHHSSG 15
Score = 25.4 bits (54), Expect = 1.3
Identities = 12/31 (38%), Positives = 12/31 (38%), Gaps = 12/31 (38%)
Query: 29 HHHHHSSHHEEGCCSTSDSHHQEEGCCHGHH 59
HHHHH HH HH G G H
Sbjct: 3 HHHHH--HH----------HHHSSGHIEGRH 21
>pdb|1JPK|A Chain A, Gly156asp Mutant Of Human Urod, Human Uroporphyrinogen
Iii Decarboxylase
Length = 388
Score = 37.7 bits (86), Expect = 3e-04
Identities = 15/22 (68%), Positives = 15/22 (68%), Gaps = 5/22 (22%)
Query: 19 HHHHYHGGEHHHHHHSSHHEEG 40
HHHH HHHHHHSS H EG
Sbjct: 3 HHHH-----HHHHHHSSGHIEG 19
Score = 34.3 bits (77), Expect = 0.003
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 10 GHHHHHHHTHHHHYHGGEHHHH 31
GHHHHHH HHHH G H
Sbjct: 2 GHHHHHH--HHHHSSGHIEGRH 21
Score = 32.7 bits (73), Expect = 0.008
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 9 GGHHHHHHHTHHHHYHGGEH 28
G HHHHHHH H + G H
Sbjct: 2 GHHHHHHHHHHSSGHIEGRH 21
Score = 30.4 bits (67), Expect = 0.041
Identities = 11/21 (52%), Positives = 12/21 (56%), Gaps = 5/21 (23%)
Query: 1 MAHHEEQHGGHHHHHHHTHHH 21
M HH HHHHHHH+ H
Sbjct: 1 MGHHH-----HHHHHHHSSGH 16
Score = 28.9 bits (63), Expect = 0.12
Identities = 10/15 (66%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
Query: 26 GEHHHHHHSSHHEEG 40
G HHHHHH HH G
Sbjct: 2 GHHHHHHH-HHHSSG 15
Score = 26.2 bits (56), Expect = 0.77
Identities = 10/26 (38%), Positives = 11/26 (41%), Gaps = 2/26 (7%)
Query: 28 HHHHHHSSHHEEGCCSTSDSHHQEEG 53
HHHHHH HH H + G
Sbjct: 3 HHHHHH--HHHHSSGHIEGRHMEANG 26
>pdb|1JPH|A Chain A, Ile260thr Mutant Of Human Urod, Human Uroporphyrinogen
Iii Decarboxylase
Length = 388
Score = 37.7 bits (86), Expect = 3e-04
Identities = 15/22 (68%), Positives = 15/22 (68%), Gaps = 5/22 (22%)
Query: 19 HHHHYHGGEHHHHHHSSHHEEG 40
HHHH HHHHHHSS H EG
Sbjct: 3 HHHH-----HHHHHHSSGHIEG 19
Score = 34.3 bits (77), Expect = 0.003
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 10 GHHHHHHHTHHHHYHGGEHHHH 31
GHHHHHH HHHH G H
Sbjct: 2 GHHHHHH--HHHHSSGHIEGRH 21
Score = 32.7 bits (73), Expect = 0.008
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 9 GGHHHHHHHTHHHHYHGGEH 28
G HHHHHHH H + G H
Sbjct: 2 GHHHHHHHHHHSSGHIEGRH 21
Score = 30.4 bits (67), Expect = 0.041
Identities = 11/21 (52%), Positives = 12/21 (56%), Gaps = 5/21 (23%)
Query: 1 MAHHEEQHGGHHHHHHHTHHH 21
M HH HHHHHHH+ H
Sbjct: 1 MGHHH-----HHHHHHHSSGH 16
Score = 28.9 bits (63), Expect = 0.12
Identities = 10/15 (66%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
Query: 26 GEHHHHHHSSHHEEG 40
G HHHHHH HH G
Sbjct: 2 GHHHHHHH-HHHSSG 15
Score = 26.2 bits (56), Expect = 0.77
Identities = 10/26 (38%), Positives = 11/26 (41%), Gaps = 2/26 (7%)
Query: 28 HHHHHHSSHHEEGCCSTSDSHHQEEG 53
HHHHHH HH H + G
Sbjct: 3 HHHHHH--HHHHSSGHIEGRHMEANG 26
>pdb|1JPI|A Chain A, Phe232leu Mutant Of Human Urod, Human Uroporphyrinogen
Iii Decarboxylase
Length = 388
Score = 37.7 bits (86), Expect = 3e-04
Identities = 15/22 (68%), Positives = 15/22 (68%), Gaps = 5/22 (22%)
Query: 19 HHHHYHGGEHHHHHHSSHHEEG 40
HHHH HHHHHHSS H EG
Sbjct: 3 HHHH-----HHHHHHSSGHIEG 19
Score = 34.3 bits (77), Expect = 0.003
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 10 GHHHHHHHTHHHHYHGGEHHHH 31
GHHHHHH HHHH G H
Sbjct: 2 GHHHHHH--HHHHSSGHIEGRH 21
Score = 32.7 bits (73), Expect = 0.008
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 9 GGHHHHHHHTHHHHYHGGEH 28
G HHHHHHH H + G H
Sbjct: 2 GHHHHHHHHHHSSGHIEGRH 21
Score = 30.4 bits (67), Expect = 0.041
Identities = 11/21 (52%), Positives = 12/21 (56%), Gaps = 5/21 (23%)
Query: 1 MAHHEEQHGGHHHHHHHTHHH 21
M HH HHHHHHH+ H
Sbjct: 1 MGHHH-----HHHHHHHSSGH 16
Score = 28.9 bits (63), Expect = 0.12
Identities = 10/15 (66%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
Query: 26 GEHHHHHHSSHHEEG 40
G HHHHHH HH G
Sbjct: 2 GHHHHHHH-HHHSSG 15
Score = 26.2 bits (56), Expect = 0.77
Identities = 10/26 (38%), Positives = 11/26 (41%), Gaps = 2/26 (7%)
Query: 28 HHHHHHSSHHEEGCCSTSDSHHQEEG 53
HHHHHH HH H + G
Sbjct: 3 HHHHHH--HHHHSSGHIEGRHMEANG 26
>pdb|1EY2|A Chain A, Human Homogentisate Dioxygenase With Fe(Ii)
pdb|1EYB|A Chain A, Crystal Structure Of Apo Human Homogentisate Dioxygenase
Length = 471
Score = 36.6 bits (83), Expect = 6e-04
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 10 GHHHHHHHTHHHHYHGGEHHHHHHSSHHEEGCCSTSDSHHQEEGCCHG 57
GHHHHHHH HH H + H S + + E+ C G
Sbjct: 2 GHHHHHHHHHHSSGHIDDDDKHXGSXAELKYISGFGNECSSEDPRCPG 49
Score = 30.0 bits (66), Expect = 0.053
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 8 HGGHHHHHHHTHHH 21
H HHHHHHH+ H
Sbjct: 3 HHHHHHHHHHSSGH 16
Score = 23.1 bits (48), Expect = 6.5
Identities = 11/40 (27%), Positives = 12/40 (29%)
Query: 4 HEEQHGGHHHHHHHTHHHHYHGGEHHHHHHSSHHEEGCCS 43
H H HHH H H G + S C S
Sbjct: 3 HHHHHHHHHHSSGHIDDDDKHXGSXAELKYISGFGNECSS 42
>pdb|1JXI|A Chain A, 4-Amino-5-Hydroxymethyl-2-Methylpyrimidine Phosphate
Kinase From Salmonella Typhimurium Complexed With
4-Amino-5- Hydroxymethyl-2-Methylpyrimidine
pdb|1JXI|B Chain B, 4-Amino-5-Hydroxymethyl-2-Methylpyrimidine Phosphate
Kinase From Salmonella Typhimurium Complexed With
4-Amino-5- Hydroxymethyl-2-Methylpyrimidine
pdb|1JXH|A Chain A, 4-Amino-5-Hydroxymethyl-2-Methylpyrimidine Phosphate
Kinase From Salmonella Typhimurium
pdb|1JXH|B Chain B, 4-Amino-5-Hydroxymethyl-2-Methylpyrimidine Phosphate
Kinase From Salmonella Typhimurium
Length = 288
Score = 35.8 bits (81), Expect = 0.001
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 12/31 (38%)
Query: 10 GHHHHHHHTHHHHYHGGEHHHHHHSSHHEEG 40
GHHHHHHH HHH S +H +G
Sbjct: 2 GHHHHHHH------------HHHSSGYHIQG 20
Score = 34.3 bits (77), Expect = 0.003
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 9 GGHHHHHHHTHHHHYH 24
G HHHHHHH H YH
Sbjct: 2 GHHHHHHHHHHSSGYH 17
Score = 33.1 bits (74), Expect = 0.006
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 5/25 (20%)
Query: 1 MAHHEEQHGGHHHHHHHTHHHHYHG 25
M HH HHHHHHH+ +H G
Sbjct: 1 MGHHH-----HHHHHHHSSGYHIQG 20
Score = 26.2 bits (56), Expect = 0.77
Identities = 9/22 (40%), Positives = 9/22 (40%)
Query: 29 HHHHHSSHHEEGCCSTSDSHHQ 50
HHHHH HH H Q
Sbjct: 3 HHHHHHHHHHSSGYHIQGRHMQ 24
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex
pdb|1ICI|B Chain B, Crystal Structure Of A Sir2 Homolog-Nad Complex
Length = 256
Score = 32.3 bits (72), Expect = 0.011
Identities = 11/19 (57%), Positives = 12/19 (62%)
Query: 26 GEHHHHHHSSHHEEGCCST 44
G HHHHHH SH +E T
Sbjct: 1 GSHHHHHHGSHMDEKLLKT 19
Score = 28.1 bits (61), Expect = 0.20
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 9 GGHHHHHHHTH 19
G HHHHHH +H
Sbjct: 1 GSHHHHHHGSH 11
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 10 GHHHHHHHTHH 20
G HHHHHH H
Sbjct: 1 GSHHHHHHGSH 11
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 18 THHHHYHG 25
+HHHH+HG
Sbjct: 2 SHHHHHHG 9
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 31.6 bits (70), Expect = 0.018
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 12 HHHHHHTHHH 21
HHHHHH HHH
Sbjct: 2 HHHHHHHHHH 11
Score = 31.6 bits (70), Expect = 0.018
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 13 HHHHHTHHHH 22
HHHHH HHHH
Sbjct: 2 HHHHHHHHHH 11
Score = 31.6 bits (70), Expect = 0.018
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 11 HHHHHHHTHH 20
HHHHHHH HH
Sbjct: 2 HHHHHHHHHH 11
Score = 31.2 bits (69), Expect = 0.024
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Query: 20 HHHYHGGEHHHHHHSSHHEEG 40
HHH+H HHHHH S ++G
Sbjct: 2 HHHHH---HHHHHKVSRDKDG 19
Score = 29.3 bits (64), Expect = 0.090
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 14 HHHHTHHHHY 23
HHHH HHHH+
Sbjct: 2 HHHHHHHHHH 11
Score = 29.3 bits (64), Expect = 0.090
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 15 HHHTHHHHYH 24
HHH HHHH+H
Sbjct: 2 HHHHHHHHHH 11
Score = 27.7 bits (60), Expect = 0.26
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 8 HGGHHHHHHH 17
H HHHHHHH
Sbjct: 2 HHHHHHHHHH 11
>pdb|1MB1| Mbp1 From Saccharomyces Cerevisiae
Length = 130
Score = 30.0 bits (66), Expect = 0.053
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 20 HHHYHGGEHHHHHH 33
HHH +HHHHHH
Sbjct: 117 HHHASKVDHHHHHH 130
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 3 HHEEQHGGHHHHHH 16
HH HHHHHH
Sbjct: 117 HHHASKVDHHHHHH 130
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 11 HHHHHHHTHHHHYH 24
HHH HHHH+H
Sbjct: 117 HHHASKVDHHHHHH 130
>pdb|1KR4|A Chain A, Structure Genomics, Protein Tm1056, Cuta
Length = 125
Score = 29.6 bits (65), Expect = 0.069
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 25 GGEHHHHHHSSHHE 38
G HHHHHHSS E
Sbjct: 2 GSSHHHHHHSSGRE 15
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
Score = 23.9 bits (50), Expect = 3.8
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 26 GEHHHHHHSSHHEE 39
G HHHHH S E
Sbjct: 2 GSSHHHHHHSSGRE 15
>pdb|1K7K|A Chain A, Putative Ribosomal Protein
Length = 221
Score = 29.6 bits (65), Expect = 0.069
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 25 GGEHHHHHHSSHHE 38
G HHHHHHSS E
Sbjct: 2 GSSHHHHHHSSGRE 15
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
Score = 24.6 bits (52), Expect = 2.2
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 18 THHHHYHGGEHHHHHHSSHHEEGCCSTSD 46
+HHHH+H + + H ++ +T +
Sbjct: 4 SHHHHHHSSGRENLYFQGHXQKVVLATGN 32
Score = 23.9 bits (50), Expect = 3.8
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 26 GEHHHHHHSSHHEE 39
G HHHHH S E
Sbjct: 2 GSSHHHHHHSSGRE 15
Score = 23.5 bits (49), Expect = 5.0
Identities = 7/18 (38%), Positives = 10/18 (54%)
Query: 11 HHHHHHHTHHHHYHGGEH 28
HHHHHH + + + H
Sbjct: 5 HHHHHHSSGRENLYFQGH 22
>pdb|1KKL|H Chain H, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS HPR
pdb|1KKL|I Chain I, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS HPR
pdb|1KKL|J Chain J, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS HPR
Length = 100
Score = 29.3 bits (64), Expect = 0.090
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 26 GEHHHHHHSSHHEEGCCSTSDS 47
G HHHHHH S ++ T+DS
Sbjct: 3 GSHHHHHHGSMAQKTFKVTADS 24
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 18 THHHHYHG 25
+HHHH+HG
Sbjct: 4 SHHHHHHG 11
Score = 23.1 bits (48), Expect = 6.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 25 GGEHHHHHHS 34
G HHHHH S
Sbjct: 3 GSHHHHHHGS 12
>pdb|1GZU|A Chain A, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
pdb|1GZU|B Chain B, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
pdb|1GZU|C Chain C, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
Length = 290
Score = 29.3 bits (64), Expect = 0.090
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 26 GEHHHHHHSSHHEE 39
G HHHHHH S + E
Sbjct: 3 GSHHHHHHGSENSE 16
Score = 25.8 bits (55), Expect = 1.00
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 18 THHHHYHGGEH 28
+HHHH+HG E+
Sbjct: 4 SHHHHHHGSEN 14
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.4 bits (54), Expect = 1.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 25 GGEHHHHHHSSHHEE 39
G HHHHH S + E+
Sbjct: 3 GSHHHHHHGSENSEK 17
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 3 GSHHHHHH 10
>pdb|1JI7|A Chain A, Crystal Structure Of Tel Sam Polymer
pdb|1JI7|B Chain B, Crystal Structure Of Tel Sam Polymer
pdb|1JI7|C Chain C, Crystal Structure Of Tel Sam Polymer
Length = 89
Score = 29.3 bits (64), Expect = 0.090
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 1 MAHHEEQHGGHHHHHHHTH 19
+ H + HHHHHHH H
Sbjct: 70 LLQHILKQRDHHHHHHHRH 88
Score = 26.2 bits (56), Expect = 0.77
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 27 EHHHHHHSSH 36
+HHHHHH H
Sbjct: 79 DHHHHHHHRH 88
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 14 HHHHTHHHH 22
HHHH HH H
Sbjct: 80 HHHHHHHRH 88
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 12 HHHHHHTHH 20
HHHHHH H
Sbjct: 80 HHHHHHHRH 88
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 13 HHHHHTHHH 21
HHHHH H H
Sbjct: 80 HHHHHHHRH 88
Score = 25.0 bits (53), Expect = 1.7
Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 7 QHGGHHHHHHHTHHHHYH 24
QH HHH HHHH H
Sbjct: 72 QHILKQRDHHH-HHHHRH 88
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 29 HHHHHSSHHE 38
HHHHH H+
Sbjct: 80 HHHHHHHRHD 89
>pdb|1KP5|A Chain A, Cyclic Green Fluorescent Protein
pdb|1KP5|B Chain B, Cyclic Green Fluorescent Protein
Length = 246
Score = 29.3 bits (64), Expect = 0.090
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 25 GGEHHHHHHSSHHEE 39
G HHHHHHS EE
Sbjct: 2 GSRHHHHHHSRKGEE 16
Score = 25.8 bits (55), Expect = 1.00
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSRHHHHHHS 11
>pdb|1KKM|H Chain H, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS P-Ser-Hpr
pdb|1KKM|I Chain I, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS P-Ser-Hpr
pdb|1KKM|J Chain J, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS P-Ser-Hpr
Length = 100
Score = 29.3 bits (64), Expect = 0.090
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 26 GEHHHHHHSSHHEEGCCSTSDS 47
G HHHHHH S ++ T+DS
Sbjct: 3 GSHHHHHHGSMAQKTFKVTADS 24
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 18 THHHHYHG 25
+HHHH+HG
Sbjct: 4 SHHHHHHG 11
Score = 23.1 bits (48), Expect = 6.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 25 GGEHHHHHHS 34
G HHHHH S
Sbjct: 3 GSHHHHHHGS 12
>pdb|1KKX|A Chain A, Solution Structure Of The Dna-Binding Domain Of Adr6
pdb|1KN5|A Chain A, Solution Structure Of Arid Domain Of Adr6 From
Saccharomyces Cerevisiae
Length = 123
Score = 28.9 bits (63), Expect = 0.12
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 26 GEHHHHHHSSHHEE 39
G HHHHHH S++++
Sbjct: 5 GSHHHHHHGSNNKQ 18
Score = 28.1 bits (61), Expect = 0.20
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 9 GGHHHHHHHTHHHHY 23
G HHHHHH +++ Y
Sbjct: 5 GSHHHHHHGSNNKQY 19
Score = 24.3 bits (51), Expect = 2.9
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 25 GGEHHHHHHSSHHE 38
G HHHHH S++ +
Sbjct: 5 GSHHHHHHGSNNKQ 18
Score = 24.3 bits (51), Expect = 2.9
Identities = 6/14 (42%), Positives = 10/14 (70%)
Query: 18 THHHHYHGGEHHHH 31
+HHHH+HG + +
Sbjct: 6 SHHHHHHGSNNKQY 19
>pdb|1A02|N Chain N, Structure Of The Dna Binding Domains Of Nfat, Fos And
Jun Bound To Dna
Length = 301
Score = 28.9 bits (63), Expect = 0.12
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 10 GHHHHHHHTHHH 21
G HHHHHHT H
Sbjct: 3 GSHHHHHHTDPH 14
Score = 28.1 bits (61), Expect = 0.20
Identities = 8/12 (66%), Positives = 9/12 (74%)
Query: 26 GEHHHHHHSSHH 37
G HHHHHH+ H
Sbjct: 3 GSHHHHHHTDPH 14
Score = 26.6 bits (57), Expect = 0.59
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 9 GGHHHHHHHTHH 20
G HHHHHH H
Sbjct: 3 GSHHHHHHTDPH 14
Score = 24.3 bits (51), Expect = 2.9
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 25 GGEHHHHHHSSH 36
G HHHHH H
Sbjct: 3 GSHHHHHHTDPH 14
Score = 22.7 bits (47), Expect = 8.5
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 18 THHHHYHGGEH 28
+HHHH+H H
Sbjct: 4 SHHHHHHTDPH 14
>pdb|1KXU| Cyclin H, A Positive Regulatory Subunit Of Cdk Activating Kinase
Length = 333
Score = 28.9 bits (63), Expect = 0.12
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 18 THHHHYHGGEHHHHHHSSH 36
+HHHH+HG +H+ H
Sbjct: 2 SHHHHHHGSMYHNSSQKRH 20
Score = 27.3 bits (59), Expect = 0.34
Identities = 10/26 (38%), Positives = 11/26 (41%)
Query: 14 HHHHTHHHHYHGGEHHHHHHSSHHEE 39
HHHH H YH H S E+
Sbjct: 3 HHHHHHGSMYHNSSQKRHWTFSSEEQ 28
Score = 26.6 bits (57), Expect = 0.59
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 12 HHHHHHTHHHHYHGGEHH 29
HHHHHH +H + H
Sbjct: 3 HHHHHHGSMYHNSSQKRH 20
Score = 26.6 bits (57), Expect = 0.59
Identities = 8/18 (44%), Positives = 11/18 (60%)
Query: 11 HHHHHHHTHHHHYHGGEH 28
HHHHHH + +H+ H
Sbjct: 3 HHHHHHGSMYHNSSQKRH 20
Score = 24.6 bits (52), Expect = 2.2
Identities = 8/26 (30%), Positives = 13/26 (49%)
Query: 13 HHHHHTHHHHYHGGEHHHHHHSSHHE 38
HHHHH +++ + H SS +
Sbjct: 3 HHHHHHGSMYHNSSQKRHWTFSSEEQ 28
Score = 24.3 bits (51), Expect = 2.9
Identities = 8/27 (29%), Positives = 12/27 (43%)
Query: 1 MAHHEEQHGGHHHHHHHTHHHHYHGGE 27
M+HH HG +H+ H + E
Sbjct: 1 MSHHHHHHGSMYHNSSQKRHWTFSSEE 27
>pdb|1JDQ|A Chain A, Solution Structure Of Tm006 Protein From Thermotoga
Maritima
Length = 98
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 1 GSSHHHHHHSS 11
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 1 GSSHHHHHHS 10
>pdb|1EHW|A Chain A, Human Nucleoside Diphosphate Kinase 4
pdb|1EHW|B Chain B, Human Nucleoside Diphosphate Kinase 4
Length = 162
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1FG5|N Chain N, Crystal Structure Of Bovine
Alpha-1,3-Galactosyltransferase Catalytic Domain
Length = 310
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8Z|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
Length = 966
Score = 28.5 bits (62), Expect = 0.15
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 6 EQHGGHHHHHH 16
E+H HHHHHH
Sbjct: 956 EKHSAHHHHHH 966
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 16 HHTHHHHYH 24
H HHHH+H
Sbjct: 958 HSAHHHHHH 966
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 24 HGGEHHHHH 32
H HHHHH
Sbjct: 958 HSAHHHHHH 966
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 961 HHHHHH 966
Score = 23.1 bits (48), Expect = 6.5
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 10 GHHHHHHHTHHH 21
G H HH HHH
Sbjct: 955 GEKHSAHHHHHH 966
Score = 22.7 bits (47), Expect = 8.5
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 7 QHGGHHHHHHHTHH 20
+ G H HHH HH
Sbjct: 953 KQGEKHSAHHHHHH 966
>pdb|1E42|B Chain B, Beta2-Adaptin Appendage Domain, From Clathrin Adaptor
Ap2
pdb|1E42|A Chain A, Beta2-Adaptin Appendage Domain, From Clathrin Adaptor
Ap2
Length = 258
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1HE8|A Chain A, Ras G12v - Pi 3-Kinase Gamma Complex
Length = 965
Score = 28.5 bits (62), Expect = 0.15
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 6 EQHGGHHHHHH 16
E+H HHHHHH
Sbjct: 955 EKHSAHHHHHH 965
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 16 HHTHHHHYH 24
H HHHH+H
Sbjct: 957 HSAHHHHHH 965
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 24 HGGEHHHHH 32
H HHHHH
Sbjct: 957 HSAHHHHHH 965
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 960 HHHHHH 965
Score = 23.1 bits (48), Expect = 6.5
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 10 GHHHHHHHTHHH 21
G H HH HHH
Sbjct: 954 GEKHSAHHHHHH 965
Score = 22.7 bits (47), Expect = 8.5
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 7 QHGGHHHHHHHTHH 20
+ G H HHH HH
Sbjct: 952 KQGEKHSAHHHHHH 965
>pdb|1FI4|A Chain A, The X-Ray Crystal Structure Of Mevalonate 5-Diphosphate
Decarboxylase At 2.3 Angstrom Resolution
Length = 416
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1IG3|A Chain A, Mouse Thiamin Pyrophosphokinase Complexed With Thiamin
pdb|1IG3|B Chain B, Mouse Thiamin Pyrophosphokinase Complexed With Thiamin
Length = 263
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
Score = 23.9 bits (50), Expect = 3.8
Identities = 9/22 (40%), Positives = 9/22 (40%)
Query: 10 GHHHHHHHTHHHHYHGGEHHHH 31
G HHHHH G H H
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMEH 23
>pdb|1IW5|A Chain A, Solution Structure Of The Bola-Like Protein From Mus
Musculus
Length = 113
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 3 GSSHHHHHHSS 13
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 3 GSSHHHHHHS 12
>pdb|1JB1|A Chain A, Lactobacillus Casei HprkP BOUND TO PHOSPHATE
Length = 205
Score = 28.5 bits (62), Expect = 0.15
Identities = 10/24 (41%), Positives = 13/24 (53%)
Query: 26 GEHHHHHHSSHHEEGCCSTSDSHH 49
G HHHHHH S + + + S H
Sbjct: 3 GSHHHHHHGSXYLDSQLAERRSXH 26
Score = 25.8 bits (55), Expect = 1.00
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 9 GGHHHHHHHTHHHHYHGGEHHHHH 32
G HHHHHH + + E H
Sbjct: 3 GSHHHHHHGSXYLDSQLAERRSXH 26
Score = 24.6 bits (52), Expect = 2.2
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 25 GGEHHHHHHSSHHEEGCCSTSDSH 48
G HHHHH S + + H
Sbjct: 3 GSHHHHHHGSXYLDSQLAERRSXH 26
>pdb|1BB9| Crystal Structure Of The Sh3 Domain From Rat Amphiphysin 2
Length = 115
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1CBF| The X-Ray Structure Of A Cobalamin Biosynthetic Enzyme, Cobalt
Precorrin-4 Methyltransferase, Cbif
Length = 285
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1DTO|A Chain A, Crystal Structure Of The Complete Transactivation Domain
Of E2 Protein From The Human Papillomavirus Type 16
Length = 221
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1GYU|A Chain A, Gamma-Adaptin Appendage Domain From Clathrin Adaptor Ap1
Length = 140
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1L9X|B Chain B, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|D Chain D, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|A Chain A, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|C Chain C, Structure Of Gamma-Glutamyl Hydrolase
Length = 315
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
Score = 23.1 bits (48), Expect = 6.5
Identities = 9/23 (39%), Positives = 9/23 (39%)
Query: 10 GHHHHHHHTHHHHYHGGEHHHHH 32
G HHHHH G H H
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMRPH 24
>pdb|2LBD| Ligand-Binding Domain Of The Human Retinoic Acid Receptor Gamma
Bound To All-Trans Retinoic Acid
pdb|3LBD| Ligand-Binding Domain Of The Human Retinoic Acid Receptor Gamma
Bound To 9-Cis Retinoic Acid
pdb|4LBD| Ligand-Binding Domain Of The Human Retinoic Acid Receptor Gamma
Bound To The Synthetic Agonist Bms961
Length = 267
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 28.1 bits (61), Expect = 0.20
Identities = 13/42 (30%), Positives = 17/42 (39%)
Query: 9 GGHHHHHHHTHHHHYHGGEHHHHHHSSHHEEGCCSTSDSHHQ 50
G HHHHHH+ G + S EE S +H +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMDSYELSPQLEELITKVSKAHQE 43
Score = 25.4 bits (54), Expect = 1.3
Identities = 13/42 (30%), Positives = 15/42 (34%)
Query: 10 GHHHHHHHTHHHHYHGGEHHHHHHSSHHEEGCCSTSDSHHQE 51
G HHHHH G H + S E + HQE
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMDSYELSPQLEELITKVSKAHQE 43
>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
Length = 254
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1FV3|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
pdb|1FV3|B Chain B, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
pdb|1FV2|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
Length = 472
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1JPE|A Chain A, Crystal Structure Of Dsbd-Alpha; The N-Terminal Domain
Of Dsbd
Length = 151
Score = 28.5 bits (62), Expect = 0.15
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 9 GGHHHHHHHTHHHHYHGG 26
G HHHHHH + + ++ G
Sbjct: 3 GSHHHHHHGSENLYFQSG 20
Score = 27.3 bits (59), Expect = 0.34
Identities = 8/12 (66%), Positives = 9/12 (74%)
Query: 26 GEHHHHHHSSHH 37
G HHHHHH S +
Sbjct: 3 GSHHHHHHGSEN 14
Score = 25.8 bits (55), Expect = 1.00
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 18 THHHHYHGGEH 28
+HHHH+HG E+
Sbjct: 4 SHHHHHHGSEN 14
Score = 23.5 bits (49), Expect = 5.0
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 25 GGEHHHHHHSSH 36
G HHHHH S +
Sbjct: 3 GSHHHHHHGSEN 14
>pdb|1L2J|A Chain A, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol
pdb|1L2J|B Chain B, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol
Length = 271
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1G8O|A Chain A, Crystallographic Structure Of The Native Bovine
Alpha-1,3- Galactosyltransferase Catalytic Domain
pdb|1G93|A Chain A, Crystal Structure Of The Bovine Catalytic Domain Of
Alpha-1, 3-Galactosyltransferase In The Presence Of
Udp-Galactose
Length = 310
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1KZF|A Chain A, Crystal Structure Of The Acyl-Homoserine Lactone
Synthase, Esai
pdb|1K4J|A Chain A, Crystal Structure Of The Acyl-Homoserinelactone Synthase
Esai Complexed With Rhenate
Length = 230
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1K0R|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nusa
pdb|1K0R|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nusa
Length = 366
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1GKL|A Chain A, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Ferulic Acid
pdb|1GKL|B Chain B, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Ferulic Acid
Length = 297
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 13 HHHHHTHHHHYHGGEHHHHHH 33
H+ + + +H EHHHHHH
Sbjct: 277 HYIYDALPYFFHELEHHHHHH 297
Score = 23.9 bits (50), Expect = 3.8
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 8 HGGHHHHHHH 17
H HHHHHH
Sbjct: 288 HELEHHHHHH 297
>pdb|1KU1|A Chain A, Crystal Structure Of The Sec7 Domain Of Yeast Gea2
pdb|1KU1|B Chain B, Crystal Structure Of The Sec7 Domain Of Yeast Gea2
Length = 230
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1A9U| The Complex Structure Of The Map Kinase P38SB203580
pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995
pdb|1BL7|A Chain A, The Complex Structure Of The Map Kinase P38SB220025
Length = 379
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 1 GSSHHHHHHSS 11
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 1 GSSHHHHHHS 10
>pdb|1JJR|A Chain A, The Three-Dimensional Structure Of The C-Terminal Dna
Binding Domain Of Human Ku70
Length = 151
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
Length = 254
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1J6Y|A Chain A, Solution Structure Of Pin1at From Arabidopsis Thaliana
Length = 139
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1M1M|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
pdb|1M1M|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
Length = 355
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1E17|A Chain A, Solution Structure Of The Dna Binding Domain Of The
Human Forkhead Transcription Factor Afx (Foxo4)
Length = 150
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 1 GSSHHHHHHSS 11
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 1 GSSHHHHHHS 10
>pdb|1GKK|A Chain A, Feruloyl Esterase Domain Of Xyny From Clostridium
Thermocellum
pdb|1GKK|B Chain B, Feruloyl Esterase Domain Of Xyny From Clostridium
Thermocellum
Length = 297
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 13 HHHHHTHHHHYHGGEHHHHHH 33
H+ + + +H EHHHHHH
Sbjct: 277 HYIYDALPYFFHELEHHHHHH 297
Score = 23.9 bits (50), Expect = 3.8
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 8 HGGHHHHHHH 17
H HHHHHH
Sbjct: 288 HELEHHHHHH 297
>pdb|1LBD| Ligand-Binding Domain Of The Human Nuclear Receptor Rxr-Alpha
Length = 282
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1P38| The Structure Of The Map Kinase P38 At 2.1 Angstoms Resolution
pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655
Length = 379
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 1 GSSHHHHHHSS 11
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 1 GSSHHHHHHS 10
>pdb|1JE3|A Chain A, Solution Structure Of Ec005 From Escherichia Coli
Length = 97
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1I39|A Chain A, Rnase Hii From Archaeoglobus Fulgidus
pdb|1I3A|A Chain A, Rnase Hii From Archaeoglobus Fulgidus With Cobalt
Hexammine Chloride
Length = 225
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 25 GGEHHHHHHSS 35
G HHHHHHSS
Sbjct: 2 GSSHHHHHHSS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 9 GGHHHHHHHT 18
G HHHHHH+
Sbjct: 2 GSSHHHHHHS 11
>pdb|1JAK|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase In
Complex With (2r,3r,4s,5r)-2-Acetamido-3,4-Dihydroxy-5-
Hydroxymethyl-Piperidinium Chloride (Ifg)
pdb|1HP5|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase
Complexed With Intermediate Analouge Nag-Thiazoline
pdb|1HP4|A Chain A, Crystal Structure Of Streptomyces Plicatus Beta-N-
Acetylhexosaminidase
Length = 512
Score = 28.1 bits (61), Expect = 0.20
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 11 HHHHHHHT 18
HHHHHHHT
Sbjct: 2 HHHHHHHT 9
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 28 HHHHHHS 34
HHHHHH+
Sbjct: 3 HHHHHHT 9
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 2 HHHHHH 7
>pdb|1AMX| Collagen-Binding Domain From A Staphylococcus Aureus Adhesin
Length = 180
Score = 28.1 bits (61), Expect = 0.20
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 26 GEHHHHHHSSHHEEGCCSTSDSHHQEE 52
G HHHHHH S G ST+ + H+ E
Sbjct: 3 GSHHHHHHGS-ITSGNKSTNVTVHKSE 28
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 18 THHHHYHG 25
+HHHH+HG
Sbjct: 4 SHHHHHHG 11
>pdb|1J6O|A Chain A, Crystal Structure Of Conserved Hypothetical Protein
(Tm0667) From Thermotoga Maritima At 1.8 A Resolution
Length = 268
Score = 28.1 bits (61), Expect = 0.20
Identities = 14/32 (43%), Positives = 17/32 (52%), Gaps = 3/32 (9%)
Query: 11 HHHHHH--HTHHH-HYHGGEHHHHHHSSHHEE 39
HHHHHH TH H H+H + + S EE
Sbjct: 7 HHHHHHXVDTHAHLHFHQFDDDRNAVISSFEE 38
Score = 25.0 bits (53), Expect = 1.7
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 16 HHTHHHHYHGGEHHHHHHSSHHEEGCCSTSDSHHQE 51
HH HHH H H H S+ + ++ E
Sbjct: 7 HHHHHHXVDTHAHLHFHQFDDDRNAVISSFEENNIE 42
>pdb|1G7K|A Chain A, Crystal Structure Of Dsred, A Red Fluorescent Protein
From Discosoma Sp. Red
pdb|1G7K|B Chain B, Crystal Structure Of Dsred, A Red Fluorescent Protein
From Discosoma Sp. Red
pdb|1G7K|C Chain C, Crystal Structure Of Dsred, A Red Fluorescent Protein
From Discosoma Sp. Red
pdb|1G7K|D Chain D, Crystal Structure Of Dsred, A Red Fluorescent Protein
From Discosoma Sp. Red
Length = 234
Score = 28.1 bits (61), Expect = 0.20
Identities = 12/34 (35%), Positives = 15/34 (43%), Gaps = 1/34 (2%)
Query: 26 GEHHHHHHSSHHEEGCCSTSDSHH-QEEGCCHGH 58
G HHHHHH S + + EG +GH
Sbjct: 3 GSHHHHHHGSRSSKNVIKEFXRFKVRXEGTVNGH 36
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 18 THHHHYHG 25
+HHHH+HG
Sbjct: 4 SHHHHHHG 11
>pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal
pdb|1JCG|A Chain A, Mreb From Thermotoga Maritima, Amppnp
Length = 344
Score = 27.7 bits (60), Expect = 0.26
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 25 GGEHHHHHH 33
GG HHHHHH
Sbjct: 336 GGSHHHHHH 344
Score = 27.3 bits (59), Expect = 0.34
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 9 GGHHHHHHH 17
GG HHHHHH
Sbjct: 336 GGSHHHHHH 344
>pdb|1KKL|A Chain A, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS HPR
pdb|1KKL|B Chain B, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS HPR
pdb|1KKL|C Chain C, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS HPR
pdb|1KKM|A Chain A, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS P-Ser-Hpr
pdb|1KKM|B Chain B, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS P-Ser-Hpr
pdb|1KKM|C Chain C, L.Casei HprkP IN COMPLEX WITH B.SUBTILIS P-Ser-Hpr
Length = 205
Score = 27.7 bits (60), Expect = 0.26
Identities = 10/24 (41%), Positives = 13/24 (53%)
Query: 26 GEHHHHHHSSHHEEGCCSTSDSHH 49
G HHHHHH S + + + S H
Sbjct: 3 GSHHHHHHGSMYLDSQLAERRSMH 26
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 23.9 bits (50), Expect = 3.8
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 25 GGEHHHHHHSSHHEEGCCSTSDSH 48
G HHHHH S + + H
Sbjct: 3 GSHHHHHHGSMYLDSQLAERRSMH 26
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 18 THHHHYHG 25
+HHHH+HG
Sbjct: 4 SHHHHHHG 11
>pdb|1ESJ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESQ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate
Length = 284
Score = 27.7 bits (60), Expect = 0.26
Identities = 11/26 (42%), Positives = 13/26 (49%), Gaps = 2/26 (7%)
Query: 26 GEHHHHHHSSHHEEGC--CSTSDSHH 49
G HHHHHH S + C T+ H
Sbjct: 3 GSHHHHHHGSMDAQSAAKCLTAVRRH 28
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 18 THHHHYHG 25
+HHHH+HG
Sbjct: 4 SHHHHHHG 11
>pdb|1I4W|A Chain A, The Crystal Structure Of The Transcription Factor
Sc-Mttfb Offers Intriguing Insights Into Mitochondrial
Transcription
Length = 353
Score = 27.7 bits (60), Expect = 0.26
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 25 GGEHHHHHH 33
GG HHHHHH
Sbjct: 2 GGSHHHHHH 10
Score = 27.3 bits (59), Expect = 0.34
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 9 GGHHHHHHH 17
GG HHHHHH
Sbjct: 2 GGSHHHHHH 10
Score = 23.5 bits (49), Expect = 5.0
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 25 GGEHHHHHHSS 35
G HHHHH +S
Sbjct: 3 GSHHHHHHMAS 13
>pdb|1KNA|A Chain A, Chromo Domain Of Hp1 Complexed With Histone H3 Tail
Containing Dimethyllysine 9.
pdb|1KNE|A Chain A, Chomo Domain Of Hp1 Complexed With Histone H3 Tail
Containing Trimethyllysine 9
Length = 69
Score = 27.7 bits (60), Expect = 0.26
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 27 EHHHHHHSSHHEE 39
+HHHHHH+ EE
Sbjct: 3 KHHHHHHAEEEEE 15
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 4 HHHHHH 9
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 4 HHHHHH 9
Score = 23.1 bits (48), Expect = 6.5
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 28 HHHHHHSSHHEE 39
HHHHH EE
Sbjct: 5 HHHHHAEEEEEE 16
Score = 22.7 bits (47), Expect = 8.5
Identities = 6/14 (42%), Positives = 8/14 (56%)
Query: 19 HHHHYHGGEHHHHH 32
HHHH+H E +
Sbjct: 4 HHHHHHAEEEEEEY 17
>pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
Length = 388
Score = 27.7 bits (60), Expect = 0.26
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 9 GGHHHHHH 16
GGHHHHHH
Sbjct: 381 GGHHHHHH 388
Score = 26.6 bits (57), Expect = 0.59
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 17 HTHHHHYHGGEHHHHH 32
H + GG HHHHH
Sbjct: 373 HLRQYELLGGHHHHHH 388
Score = 24.6 bits (52), Expect = 2.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 381 GGHHHHHH 388
>pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)- Triphosphate (Rp), Mg, And Mn
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
Length = 402
Score = 27.7 bits (60), Expect = 0.26
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 9 GGHHHHHH 16
GGHHHHHH
Sbjct: 395 GGHHHHHH 402
Score = 26.6 bits (57), Expect = 0.59
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 17 HTHHHHYHGGEHHHHH 32
H + GG HHHHH
Sbjct: 387 HLRQYELLGGHHHHHH 402
Score = 24.6 bits (52), Expect = 2.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 395 GGHHHHHH 402
>pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima
Length = 344
Score = 27.7 bits (60), Expect = 0.26
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 25 GGEHHHHHH 33
GG HHHHHH
Sbjct: 336 GGSHHHHHH 344
Score = 27.3 bits (59), Expect = 0.34
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 9 GGHHHHHHH 17
GG HHHHHH
Sbjct: 336 GGSHHHHHH 344
>pdb|1MFQ|C Chain C, Crystal Structure Analysis Of A Ternary S-Domain Complex
Of Human Signal Recognition Particle
Length = 129
Score = 27.7 bits (60), Expect = 0.26
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 10 GHHHHHHHTH 19
G HHHHHH H
Sbjct: 3 GSHHHHHHKH 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 26 GEHHHHHH 33
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 23.9 bits (50), Expect = 3.8
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 17 HTHHHHYHG 25
H HHHH HG
Sbjct: 5 HHHHHHKHG 13
Score = 22.7 bits (47), Expect = 8.5
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 29 HHHHHSSH 36
HHHHH H
Sbjct: 5 HHHHHHKH 12
>pdb|1KZG|A Chain A, Dbscdc42(Y889f)
pdb|1KZG|C Chain C, Dbscdc42(Y889f)
Length = 353
Score = 27.3 bits (59), Expect = 0.34
Identities = 8/13 (61%), Positives = 9/13 (68%)
Query: 5 EEQHGGHHHHHHH 17
E+ H HHHHHH
Sbjct: 341 EQSHSLEHHHHHH 353
Score = 26.6 bits (57), Expect = 0.59
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 24 HGGEHHHHHH 33
H EHHHHHH
Sbjct: 344 HSLEHHHHHH 353
Score = 24.6 bits (52), Expect = 2.2
Identities = 8/18 (44%), Positives = 9/18 (49%)
Query: 7 QHGGHHHHHHHTHHHHYH 24
QH H HHHH+H
Sbjct: 336 QHRALEQSHSLEHHHHHH 353
>pdb|1LB1|A Chain A, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|C Chain C, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|E Chain E, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|G Chain G, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 353
Score = 27.3 bits (59), Expect = 0.34
Identities = 8/13 (61%), Positives = 9/13 (68%)
Query: 5 EEQHGGHHHHHHH 17
E+ H HHHHHH
Sbjct: 341 EQSHSLEHHHHHH 353
Score = 26.6 bits (57), Expect = 0.59
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 24 HGGEHHHHHH 33
H EHHHHHH
Sbjct: 344 HSLEHHHHHH 353
Score = 24.6 bits (52), Expect = 2.2
Identities = 8/18 (44%), Positives = 9/18 (49%)
Query: 7 QHGGHHHHHHHTHHHHYH 24
QH H HHHH+H
Sbjct: 336 QHRALEQSHSLEHHHHHH 353
>pdb|1IWG|A Chain A, Crystal Structure Of Bacterial Multidrug Efflux Transporter
Acrb
Length = 1053
Score = 27.3 bits (59), Expect = 0.34
Identities = 8/12 (66%), Positives = 9/12 (74%)
Query: 22 HYHGGEHHHHHH 33
H H +HHHHHH
Sbjct: 1042 HSHTVDHHHHHH 1053
Score = 25.8 bits (55), Expect = 1.00
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 5 EEQHGGHHHHHHH 17
E H HHHHHH
Sbjct: 1041 EHSHTVDHHHHHH 1053
Score = 24.3 bits (51), Expect = 2.9
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 13 HHHHHTHHHHYH 24
H H HHHH+H
Sbjct: 1042 HSHTVDHHHHHH 1053
Score = 22.7 bits (47), Expect = 8.5
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 11 HHHHHHHTHHHH 22
H H H HHHH
Sbjct: 1042 HSHTVDHHHHHH 1053
>pdb|1KZ7|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|C Chain C, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
Length = 353
Score = 27.3 bits (59), Expect = 0.34
Identities = 8/13 (61%), Positives = 9/13 (68%)
Query: 5 EEQHGGHHHHHHH 17
E+ H HHHHHH
Sbjct: 341 EQSHSLEHHHHHH 353
Score = 26.6 bits (57), Expect = 0.59
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 24 HGGEHHHHHH 33
H EHHHHHH
Sbjct: 344 HSLEHHHHHH 353
Score = 24.6 bits (52), Expect = 2.2
Identities = 8/18 (44%), Positives = 9/18 (49%)
Query: 7 QHGGHHHHHHHTHHHHYH 24
QH H HHHH+H
Sbjct: 336 QHRALEQSHSLEHHHHHH 353
>pdb|1K7L|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The
Human Pparalpha Ligand Binding Domain Bound With
Gw409544 And A Co-Activator Peptide.
pdb|1K7L|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The
Human Pparalpha Ligand Binding Domain Bound With
Gw409544 And A Co-Activator Peptide.
pdb|1K7L|E Chain E, The 2.5 Angstrom Resolution Crystal Structure Of The
Human Pparalpha Ligand Binding Domain Bound With
Gw409544 And A Co-Activator Peptide.
pdb|1K7L|G Chain G, The 2.5 Angstrom Resolution Crystal Structure Of The
Human Pparalpha Ligand Binding Domain Bound With
Gw409544 And A Co-Activator Peptide
Length = 288
Score = 27.3 bits (59), Expect = 0.34
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 10 GHHHHHHHTH 19
GHHHHHH H
Sbjct: 4 GHHHHHHGEH 13
Score = 26.6 bits (57), Expect = 0.59
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 28 HHHHHHSSHHEE 39
HHHHHH H E
Sbjct: 5 HHHHHHGEHDIE 16
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 12 HHHHHHTHH 20
HHHHHH H
Sbjct: 5 HHHHHHGEH 13
Score = 24.6 bits (52), Expect = 2.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 29 HHHHHSSHHEEGCCSTSD 46
HHHHH H+ T+D
Sbjct: 5 HHHHHHGEHDIEDSETAD 22
Score = 24.3 bits (51), Expect = 2.9
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 20 HHHYHGGEH 28
HHH+H GEH
Sbjct: 5 HHHHHHGEH 13
>pdb|1F2V|A Chain A, Crystal Structure Analysis Of Precorrin-8x Methylmutase
Of Aerobic Vitamin B12 Synthesis
pdb|1I1H|A Chain A, Crystal Structure Analysis Of Precorrin-8x Methylmutase
Complex With Hydrogenobyrinic Acid
Length = 219
Score = 27.3 bits (59), Expect = 0.34
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 10 GHHHHHHHTHHHHYHGG 26
G HHHHHH + + G
Sbjct: 3 GSHHHHHHPEYDYIRDG 19
Score = 25.8 bits (55), Expect = 1.00
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 26 GEHHHHHHSSH 36
G HHHHHH +
Sbjct: 3 GSHHHHHHPEY 13
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
>pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A And Udp-N-Acetylglucosamine
pdb|1HM9|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A And Udp-N-Acetylglucosamine
pdb|1HM8|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A
pdb|1HM8|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A
pdb|1HM0|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine 1-
Phosphate Uridyltransferase, Glmu
pdb|1HM0|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine 1-
Phosphate Uridyltransferase, Glmu
Length = 468
Score = 27.3 bits (59), Expect = 0.34
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 26 GEHHHHHHSS 35
G HHHHHHS+
Sbjct: 3 GSHHHHHHSN 12
Score = 25.8 bits (55), Expect = 1.00
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 10 GHHHHHHHTH 19
G HHHHHH++
Sbjct: 3 GSHHHHHHSN 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
>pdb|1SKN|P Chain P, The Binding Domain Of Skn-1 In Complex With Dna: A New
Dna-Binding Motif
Length = 92
Score = 27.3 bits (59), Expect = 0.34
Identities = 8/13 (61%), Positives = 9/13 (68%)
Query: 28 HHHHHHSSHHEEG 40
HHHHHHS + G
Sbjct: 3 HHHHHHSGQRKRG 15
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 10 GHHHHHH 16
GHHHHHH
Sbjct: 2 GHHHHHH 8
Score = 24.6 bits (52), Expect = 2.2
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 19 HHHHYHGGEHHHHHHSSHHE 38
HHHH+H G+ S +
Sbjct: 3 HHHHHHSGQRKRGRQSKDEQ 22
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 12 HHHHHHT 18
HHHHHH+
Sbjct: 3 HHHHHHS 9
>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated
Protein Kinase Domain
pdb|1KOB|B Chain B, Twitchin Kinase Fragment (Aplysia), Autoregulated
Protein Kinase Domain
Length = 387
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 26 GEHHHHHHSS 35
G HHHHHH S
Sbjct: 3 GSHHHHHHGS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 23.9 bits (50), Expect = 3.8
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 18 THHHHYHGGE 27
+HHHH+HG +
Sbjct: 4 SHHHHHHGSK 13
Score = 23.1 bits (48), Expect = 6.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 25 GGEHHHHHHS 34
G HHHHH S
Sbjct: 3 GSHHHHHHGS 12
>pdb|1NED|A Chain A, Crystal Structure Of Hslv (Clpq) At 3.8 Angstroms
Resolution
pdb|1NED|B Chain B, Crystal Structure Of Hslv (Clpq) At 3.8 Angstroms
Resolution
pdb|1NED|C Chain C, Crystal Structure Of Hslv (Clpq) At 3.8 Angstroms
Resolution
Length = 183
Score = 26.9 bits (58), Expect = 0.45
Identities = 9/21 (42%), Positives = 10/21 (46%)
Query: 13 HHHHHTHHHHYHGGEHHHHHH 33
+H H Y HHHHHH
Sbjct: 163 NHFHTIEELSYKAEFHHHHHH 183
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 178 HHHHHH 183
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 178 HHHHHH 183
>pdb|1F6L|L Chain L, Variable Light Chain Dimer Of Anti-Ferritin Antibody
Length = 114
Score = 26.9 bits (58), Expect = 0.45
Identities = 11/34 (32%), Positives = 15/34 (43%), Gaps = 6/34 (17%)
Query: 6 EQHGGHHHHHHHTHHHHYHGG------EHHHHHH 33
E G ++ HH+ + G HHHHHH
Sbjct: 81 EDFGSYYCQHHYGTPFTFGSGTKLEIKRHHHHHH 114
>pdb|1BPR| Nmr Structure Of The Substrate Binding Domain Of Dnak, Minimized
Average Structure
pdb|2BPR| Nmr Structure Of The Substrate Binding Domain Of Dnak, 25
Structures
Length = 191
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 26 GEHHHHHHSS 35
G HHHHHH S
Sbjct: 2 GSHHHHHHGS 11
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 2 GSHHHHHH 9
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 2 GSHHHHHH 9
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 18 THHHHYHG 25
+HHHH+HG
Sbjct: 3 SHHHHHHG 10
Score = 23.1 bits (48), Expect = 6.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 25 GGEHHHHHHS 34
G HHHHH S
Sbjct: 2 GSHHHHHHGS 11
>pdb|1HSK|A Chain A, Crystal Structure Of S. Aureus Murb
Length = 326
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 10 GHHHHHHHT 18
G HHHHHHT
Sbjct: 3 GSHHHHHHT 11
Score = 25.8 bits (55), Expect = 1.00
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 26 GEHHHHHHS 34
G HHHHHH+
Sbjct: 3 GSHHHHHHT 11
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
>pdb|1L8W|A Chain A, Crystal Structure Of Lyme Disease Variable Surface
Antigen Vlse Of Borrelia Burgdorferi
pdb|1L8W|B Chain B, Crystal Structure Of Lyme Disease Variable Surface
Antigen Vlse Of Borrelia Burgdorferi
pdb|1L8W|C Chain C, Crystal Structure Of Lyme Disease Variable Surface
Antigen Vlse Of Borrelia Burgdorferi
pdb|1L8W|D Chain D, Crystal Structure Of Lyme Disease Variable Surface
Antigen Vlse Of Borrelia Burgdorferi
Length = 348
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 26 GEHHHHHHSS 35
G HHHHHH S
Sbjct: 3 GSHHHHHHGS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 24.6 bits (52), Expect = 2.2
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 25 GGEHHHHHHSS 35
G HHHHH SS
Sbjct: 3 GSHHHHHHGSS 13
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 18 THHHHYHG 25
+HHHH+HG
Sbjct: 4 SHHHHHHG 11
>pdb|1QFG|A Chain A, E. Coli Ferric Hydroxamate Receptor (Fhua)
pdb|1QJQ|A Chain A, Ferric Hydroxamate Receptor From Escherichia Coli (Fhua)
pdb|1QKC|A Chain A, Escherichia Coli Ferric Hydroxamate Uptake Receptor (Fhua)
In Complex Delta Two-Albomycin
Length = 725
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/13 (61%), Positives = 9/13 (68%)
Query: 23 YHGGEHHHHHHSS 35
Y+ HHHHHH S
Sbjct: 403 YNPSSHHHHHHGS 415
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 18 THHHHYHG 25
+HHHH+HG
Sbjct: 407 SHHHHHHG 414
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 408 HHHHHH 413
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 408 HHHHHH 413
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In
Complex With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In
Complex With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In
Complex With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In
Complex With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 26 GEHHHHHHSS 35
G HHHHHH S
Sbjct: 3 GSHHHHHHGS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 18 THHHHYHG 25
+HHHH+HG
Sbjct: 4 SHHHHHHG 11
Score = 23.1 bits (48), Expect = 6.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 25 GGEHHHHHHS 34
G HHHHH S
Sbjct: 3 GSHHHHHHGS 12
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 26 GEHHHHHHSS 35
G HHHHHH S
Sbjct: 3 GSHHHHHHGS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 18 THHHHYHG 25
+HHHH+HG
Sbjct: 4 SHHHHHHG 11
Score = 23.5 bits (49), Expect = 5.0
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 25 GGEHHHHHHSS 35
G HHHHH S+
Sbjct: 3 GSHHHHHHGST 13
>pdb|2IF1| Human Translation Initiation Factor Eif1, Nmr, 29 Structures
Length = 126
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 10 GHHHHHHHT 18
G HHHHHHT
Sbjct: 3 GSHHHHHHT 11
Score = 25.8 bits (55), Expect = 1.00
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 26 GEHHHHHHS 34
G HHHHHH+
Sbjct: 3 GSHHHHHHT 11
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
>pdb|1FI1|A Chain A, Fhua In Complex With Lipopolysaccharide And Rifamycin
Cgp4832
Length = 707
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/13 (61%), Positives = 9/13 (68%)
Query: 23 YHGGEHHHHHHSS 35
Y+ HHHHHH S
Sbjct: 385 YNPSSHHHHHHGS 397
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 18 THHHHYHG 25
+HHHH+HG
Sbjct: 389 SHHHHHHG 396
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 390 HHHHHH 395
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 390 HHHHHH 395
>pdb|1HW4|A Chain A, Structure Of Thymidylate Synthase Suggests Advantages Of
Chemotherapy With Noncompetitive Inhibitors
Length = 355
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 10 GHHHHHHHT 18
GHHHHHH T
Sbjct: 2 GHHHHHHDT 10
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 28 HHHHHHSS 35
HHHHHH +
Sbjct: 3 HHHHHHDT 10
>pdb|1D8W|D Chain D, L-Rhamnose Isomerase
pdb|1D8W|A Chain A, L-Rhamnose Isomerase
pdb|1D8W|B Chain B, L-Rhamnose Isomerase
pdb|1D8W|C Chain C, L-Rhamnose Isomerase
Length = 426
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 10 GHHHHHHHT 18
GHHHHHH T
Sbjct: 1 GHHHHHHXT 9
Score = 24.3 bits (51), Expect = 2.9
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 26 GEHHHHHHSSHHEE 39
G HHHHH ++ E+
Sbjct: 1 GHHHHHHXTTQLEQ 14
>pdb|1C3Q|X Chain X, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|Y Chain Y, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
pdb|1C3Q|Z Chain Z, Crystal Structure Of Native Thiazole Kinase In The
Monoclinic Form
Length = 12
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 26 GEHHHHHHSS 35
G HHHHHH S
Sbjct: 3 GSHHHHHHGS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 18 THHHHYHG 25
+HHHH+HG
Sbjct: 4 SHHHHHHG 11
Score = 23.1 bits (48), Expect = 6.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 25 GGEHHHHHHS 34
G HHHHH S
Sbjct: 3 GSHHHHHHGS 12
>pdb|1PSZ|A Chain A, Pneumococcal Surface Antigen Psaa
Length = 303
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 26 GEHHHHHHSS 35
G HHHHHH S
Sbjct: 3 GSHHHHHHGS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 24.3 bits (51), Expect = 2.9
Identities = 7/13 (53%), Positives = 9/13 (68%)
Query: 23 YHGGEHHHHHHSS 35
+ G HHHHH S+
Sbjct: 1 WRGSHHHHHHGSA 13
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 18 THHHHYHG 25
+HHHH+HG
Sbjct: 4 SHHHHHHG 11
>pdb|1QFF|A Chain A, E. Coli Ferric Hydroxamate Uptake Receptor (Fhua) In
Complex With Bound Ferrichrome-Iron
Length = 725
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/13 (61%), Positives = 9/13 (68%)
Query: 23 YHGGEHHHHHHSS 35
Y+ HHHHHH S
Sbjct: 403 YNPSSHHHHHHGS 415
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 18 THHHHYHG 25
+HHHH+HG
Sbjct: 407 SHHHHHHG 414
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 408 HHHHHH 413
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 408 HHHHHH 413
>pdb|1IFQ|B Chain B, Sec22b N-Terminal Domain
pdb|1IFQ|A Chain A, Sec22b N-Terminal Domain
Length = 138
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 26 GEHHHHHHSS 35
G HHHHHH S
Sbjct: 3 GSHHHHHHGS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 18 THHHHYHG 25
+HHHH+HG
Sbjct: 4 SHHHHHHG 11
Score = 23.1 bits (48), Expect = 6.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 25 GGEHHHHHHS 34
G HHHHH S
Sbjct: 3 GSHHHHHHGS 12
>pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT2|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease- Associated Atpase Hslu
pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
Length = 449
Score = 26.9 bits (58), Expect = 0.45
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 28 HHHHHHSSHHEEGCCSTSDSH 48
HHHHHHS S D H
Sbjct: 2 HHHHHHSEMTPREIVSELDKH 22
Score = 26.6 bits (57), Expect = 0.59
Identities = 7/8 (87%), Positives = 8/8 (99%)
Query: 11 HHHHHHHT 18
HHHHHHH+
Sbjct: 1 HHHHHHHS 8
Score = 24.3 bits (51), Expect = 2.9
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 28 HHHHHHSS 35
HHHHHH S
Sbjct: 1 HHHHHHHS 8
Score = 23.1 bits (48), Expect = 6.5
Identities = 8/11 (72%), Positives = 8/11 (72%), Gaps = 2/11 (18%)
Query: 29 HHHHHSSHHEE 39
HHHHH HH E
Sbjct: 1 HHHHH--HHSE 9
>pdb|1NQB|A Chain A, Trivalent Antibody Fragment
pdb|1NQB|C Chain C, Trivalent Antibody Fragment
Length = 256
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 5 EEQHGGHHHHHHH 17
E+ +G HHHHHH
Sbjct: 244 EDLNGAAHHHHHH 256
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 24 HGGEHHHHHH 33
+G HHHHHH
Sbjct: 247 NGAAHHHHHH 256
Score = 23.5 bits (49), Expect = 5.0
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 5 EEQHGGHHHHHHH 17
EE G HHHHH
Sbjct: 243 EEDLNGAAHHHHH 255
>pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain From The Kap-1
Corepressor
Length = 88
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 26 GEHHHHHHSS 35
G HHHHHH S
Sbjct: 3 GSHHHHHHGS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 24.3 bits (51), Expect = 2.9
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 18 THHHHYHGGE 27
+HHHH+HG +
Sbjct: 4 SHHHHHHGSD 13
Score = 23.5 bits (49), Expect = 5.0
Identities = 8/15 (53%), Positives = 9/15 (59%)
Query: 25 GGEHHHHHHSSHHEE 39
G HHHHH S +E
Sbjct: 3 GSHHHHHHGSDIIDE 17
>pdb|1JE8|A Chain A, Two-Component Response Regulator NarlDNA COMPLEX: DNA
Bending Found In A High Affinity Site
pdb|1JE8|B Chain B, Two-Component Response Regulator NarlDNA COMPLEX: DNA
Bending Found In A High Affinity Site
pdb|1JE8|E Chain E, Two-Component Response Regulator NarlDNA COMPLEX: DNA
Bending Found In A High Affinity Site
pdb|1JE8|F Chain F, Two-Component Response Regulator NarlDNA COMPLEX: DNA
Bending Found In A High Affinity Site
Length = 82
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 26 GEHHHHHHSS 35
G HHHHHH S
Sbjct: 3 GSHHHHHHGS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 23.9 bits (50), Expect = 3.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 25 GGEHHHHHHSSHHE 38
G HHHHH S+ E
Sbjct: 3 GSHHHHHHGSATTE 16
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 18 THHHHYHG 25
+HHHH+HG
Sbjct: 4 SHHHHHHG 11
>pdb|1DD9|A Chain A, Structure Of The Dnag Catalytic Core
pdb|1DDE|A Chain A, Structure Of The Dnag Catalytic Core
Length = 338
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 26 GEHHHHHHSS 35
G HHHHHH S
Sbjct: 3 GSHHHHHHGS 12
Score = 26.2 bits (56), Expect = 0.77
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 9 GGHHHHHHHTHHHH 22
G HHHHHH + H
Sbjct: 3 GSHHHHHHGSGSMH 16
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 18 THHHHYHGGEHHHHHHS 34
+HHHH+HG H +
Sbjct: 4 SHHHHHHGSGSMHQRQT 20
Score = 23.1 bits (48), Expect = 6.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 25 GGEHHHHHHS 34
G HHHHH S
Sbjct: 3 GSHHHHHHGS 12
>pdb|1HXV|A Chain A, Ppiase Domain Of The Mycoplasma Genitalium Trigger
Factor
Length = 113
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 26 GEHHHHHHSS 35
G HHHHHH S
Sbjct: 3 GSHHHHHHGS 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 18 THHHHYHGGE 27
+HHHH+HG E
Sbjct: 4 SHHHHHHGSE 13
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 23.1 bits (48), Expect = 6.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 25 GGEHHHHHHS 34
G HHHHH S
Sbjct: 3 GSHHHHHHGS 12
>pdb|1D7Q|B Chain B, Human Translation Initiation Factor Eif1a
Length = 14
Score = 26.9 bits (58), Expect = 0.45
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 10 GHHHHHHHT 18
G HHHHHHT
Sbjct: 3 GSHHHHHHT 11
Score = 25.8 bits (55), Expect = 1.00
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 26 GEHHHHHHS 34
G HHHHHH+
Sbjct: 3 GSHHHHHHT 11
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
>pdb|1F2X|L Chain L, Structure Of The Single-Domain Camelid Antibody Cab-Ca05
pdb|1F2X|K Chain K, Structure Of The Single-Domain Camelid Antibody Cab-Ca05
Length = 135
Score = 26.6 bits (57), Expect = 0.59
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 10/25 (40%)
Query: 19 HHHHYHG----------GEHHHHHH 33
+ +HY G G HHHHHH
Sbjct: 111 YDYHYRGQGTQVTVSSRGRHHHHHH 135
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 128 GRHHHHHH 135
Score = 24.6 bits (52), Expect = 2.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 128 GRHHHHHH 135
>pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Mg-Adp-Alf3
Length = 589
Score = 26.6 bits (57), Expect = 0.59
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 6 EQHGGHHHHHH 16
+Q GHHHHHH
Sbjct: 579 KQLAGHHHHHH 589
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 584 HHHHHH 589
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 584 HHHHHH 589
>pdb|1KIC|A Chain A, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With Inosine
pdb|1KIC|B Chain B, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With Inosine
pdb|1KIE|A Chain A, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With 3- Deaza-Adenosine
pdb|1KIE|B Chain B, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With 3- Deaza-Adenosine
Length = 339
Score = 26.6 bits (57), Expect = 0.59
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 25 GGEHHHHHHSS 35
G HHHHHH S
Sbjct: 3 GSPHHHHHHGS 13
Score = 24.6 bits (52), Expect = 2.2
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 9 GGHHHHHHH 17
G HHHHHH
Sbjct: 3 GSPHHHHHH 11
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 19 HHHHYHG 25
HHHH+HG
Sbjct: 6 HHHHHHG 12
>pdb|1K6L|M Chain M, Photosynethetic Reaction Center From Rhodobacter
Sphaeroides
pdb|1K6N|M Chain M, E(L212)a,D(L213)a Double Mutant Structure Of
Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
Length = 314
Score = 26.6 bits (57), Expect = 0.59
Identities = 9/16 (56%), Positives = 10/16 (62%), Gaps = 4/16 (25%)
Query: 6 EQHG----GHHHHHHH 17
+ HG HHHHHHH
Sbjct: 299 QNHGMAPLNHHHHHHH 314
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 309 HHHHHH 314
Score = 23.1 bits (48), Expect = 6.5
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 7 QHGGHHHHHHHTHHHH 22
Q+ G +HH HHHH
Sbjct: 299 QNHGMAPLNHHHHHHH 314
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 308 HHHHHH 313
>pdb|1HP0|A Chain A, Crystal Structure Of An Inosine-Adenosine-Guanosine-
Preferring Nucleoside Hydrolase From Trypanosoma Vivax
In Complex With The Substrate Analogue
3-Deaza-Adenosine
pdb|1HP0|B Chain B, Crystal Structure Of An Inosine-Adenosine-Guanosine-
Preferring Nucleoside Hydrolase From Trypanosoma Vivax
In Complex With The Substrate Analogue
3-Deaza-Adenosine
pdb|1HOZ|A Chain A, Crystal Structure Of An Inosine-Adenosine-Guanosine-
Preferring Nucleoside Hydrolase From Trypanosoma Vivax
pdb|1HOZ|B Chain B, Crystal Structure Of An Inosine-Adenosine-Guanosine-
Preferring Nucleoside Hydrolase From Trypanosoma Vivax
Length = 339
Score = 26.6 bits (57), Expect = 0.59
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 25 GGEHHHHHHSS 35
G HHHHHH S
Sbjct: 3 GSPHHHHHHGS 13
Score = 24.6 bits (52), Expect = 2.2
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 9 GGHHHHHHH 17
G HHHHHH
Sbjct: 3 GSPHHHHHH 11
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 19 HHHHYHG 25
HHHH+HG
Sbjct: 6 HHHHHHG 12
>pdb|1GQF|A Chain A, Crystal Structure Of Human Procaspase-7
pdb|1GQF|B Chain B, Crystal Structure Of Human Procaspase-7
Length = 265
Score = 26.6 bits (57), Expect = 0.59
Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 9/40 (22%)
Query: 3 HHEEQHGGHHHHHHH---------THHHHYHGGEHHHHHH 33
H E Q H H T ++ EHHHHHH
Sbjct: 226 HFESQSDDPHFHEKKQIPCVVSMLTKELYFSQLEHHHHHH 265
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain
Complexed With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A
Gtpase Domain, Determined As Myosin Fusion
Length = 776
Score = 26.6 bits (57), Expect = 0.59
Identities = 10/21 (47%), Positives = 11/21 (51%)
Query: 28 HHHHHHSSHHEEGCCSTSDSH 48
HHHHHH + TSD H
Sbjct: 3 HHHHHHDGTEDPIHDRTSDYH 23
Score = 26.2 bits (56), Expect = 0.77
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 11 HHHHHHH 17
HHHHHHH
Sbjct: 2 HHHHHHH 8
Score = 26.2 bits (56), Expect = 0.77
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 17 HTHHHHYHGGEHHHHHHSSHHEE 39
H HHHH+ G E H +S + +
Sbjct: 2 HHHHHHHDGTEDPIHDRTSDYHK 24
Score = 25.8 bits (55), Expect = 1.00
Identities = 8/23 (34%), Positives = 12/23 (51%)
Query: 28 HHHHHHSSHHEEGCCSTSDSHHQ 50
HHHHHH E+ + +H+
Sbjct: 2 HHHHHHHDGTEDPIHDRTSDYHK 24
Score = 25.4 bits (54), Expect = 1.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 16 HHTHHHHYHGGEHHHHHHSSHHE 38
HH HHHH + H S +H+
Sbjct: 2 HHHHHHHDGTEDPIHDRTSDYHK 24
Score = 24.6 bits (52), Expect = 2.2
Identities = 8/23 (34%), Positives = 10/23 (42%)
Query: 11 HHHHHHHTHHHHYHGGEHHHHHH 33
HHHHHH H +H +
Sbjct: 3 HHHHHHDGTEDPIHDRTSDYHKY 25
>pdb|1DE5|A Chain A, L-Rhamnose Isomerase
pdb|1DE6|A Chain A, L-Rhamnose Isomerase
pdb|1DE6|B Chain B, L-Rhamnose Isomerase
pdb|1DE6|C Chain C, L-Rhamnose Isomerase
pdb|1DE6|D Chain D, L-Rhamnose Isomerase
pdb|1DE5|B Chain B, L-Rhamnose Isomerase
pdb|1DE5|C Chain C, L-Rhamnose Isomerase
pdb|1DE5|D Chain D, L-Rhamnose Isomerase
Length = 426
Score = 26.6 bits (57), Expect = 0.59
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 10 GHHHHHHHT 18
GHHHHHH T
Sbjct: 1 GHHHHHHMT 9
Score = 23.9 bits (50), Expect = 3.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 26 GEHHHHHHSSHHEE 39
G HHHHH ++ E+
Sbjct: 1 GHHHHHHMTTQLEQ 14
>pdb|1JYM|A Chain A, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|B Chain B, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|E Chain E, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|D Chain D, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|H Chain H, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|F Chain F, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|G Chain G, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|I Chain I, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|J Chain J, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
pdb|1JYM|C Chain C, Crystals Of Peptide Deformylase From Plasmodium Falciparum
With Ten Subunits Per Asymmetric Unit Reveal Critical
Characteristics Of The Active Site For Drug Design
Length = 183
Score = 26.6 bits (57), Expect = 0.59
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 2 AHHEEQHGGHHHHHH 16
A H E+ HHHHHH
Sbjct: 169 ATHSEEPLEHHHHHH 183
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 177 EHHHHHH 183
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 178 HHHHHH 183
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 26.2 bits (56), Expect = 0.77
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 11 HHHHHHH 17
HHHHHHH
Sbjct: 1004 HHHHHHH 1010
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 1004 HHHHHH 1009
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 1005 HHHHHH 1010
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate
Dehydrogenase From The Archeon Pyrobaculum Aerophilum
Length = 369
Score = 26.2 bits (56), Expect = 0.77
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 28 HHHHHHSS 35
HHHHHHSS
Sbjct: 1 HHHHHHSS 8
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 12 HHHHHHT 18
HHHHHH+
Sbjct: 1 HHHHHHS 7
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 1 HHHHHH 6
>pdb|1JLJ|A Chain A, 1.6 Angstrom Crystal Structure Of The Human Neuroreceptor
Anchoring And Molybdenum Cofactor Biosynthesis Protein
Gephyrin
pdb|1JLJ|B Chain B, 1.6 Angstrom Crystal Structure Of The Human Neuroreceptor
Anchoring And Molybdenum Cofactor Biosynthesis Protein
Gephyrin
pdb|1JLJ|C Chain C, 1.6 Angstrom Crystal Structure Of The Human Neuroreceptor
Anchoring And Molybdenum Cofactor Biosynthesis Protein
Gephyrin
Length = 189
Score = 26.2 bits (56), Expect = 0.77
Identities = 8/13 (61%), Positives = 9/13 (68%)
Query: 5 EEQHGGHHHHHHH 17
+E H HHHHHH
Sbjct: 177 KEVHDRSHHHHHH 189
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 24 HGGEHHHHHH 33
H HHHHHH
Sbjct: 180 HDRSHHHHHH 189
Score = 23.9 bits (50), Expect = 3.8
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 15 HHHTHHHHYH 24
H +HHHH+H
Sbjct: 180 HDRSHHHHHH 189
>pdb|1TNM| Titin Module M5 (Connectin) (Nmr, Minimized Average Structure)
pdb|1TNN| Titin Module M5 (Connectin) (Nmr, 16 Structures)
Length = 100
Score = 26.2 bits (56), Expect = 0.77
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 28 HHHHHHSS 35
HHHHHHSS
Sbjct: 2 HHHHHHSS 9
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 12 HHHHHHT 18
HHHHHH+
Sbjct: 2 HHHHHHS 8
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 2 HHHHHH 7
>pdb|1B6U| Crystal Structure Of The Human Killer Cell Inhibitory Receptor
(Kir2dl3) Specific For Hla-Cw3 Related Alleles
Length = 257
Score = 26.2 bits (56), Expect = 0.77
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 28 HHHHHHSS 35
HHHHHHSS
Sbjct: 249 HHHHHHSS 256
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 12 HHHHHHT 18
HHHHHH+
Sbjct: 249 HHHHHHS 255
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 249 HHHHHH 254
Score = 23.1 bits (48), Expect = 6.5
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 25 GGEHHHHHHSS 35
G HHHHH S
Sbjct: 245 GSSSHHHHHHS 255
>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif)
pdb|1GV4|B Chain B, Murine Apoptosis-Inducing Factor (Aif)
Length = 528
Score = 26.2 bits (56), Expect = 0.77
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 28 HHHHHHSS 35
HHHHHHSS
Sbjct: 2 HHHHHHSS 9
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 12 HHHHHHT 18
HHHHHH+
Sbjct: 2 HHHHHHS 8
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 2 HHHHHH 7
>pdb|1INN|A Chain A, Crystal Structure Of D. Radiodurans Luxs, P21
pdb|1J6V|A Chain A, Crystal Structure Of D. Radiodurans Luxs, C2
pdb|1INN|B Chain B, Crystal Structure Of D. Radiodurans Luxs, P21
Length = 166
Score = 26.2 bits (56), Expect = 0.77
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 7 QHGGHHHHHH 16
+ G HHHHHH
Sbjct: 157 ERGSHHHHHH 166
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 26 GEHHHHHH 33
G HHHHHH
Sbjct: 159 GSHHHHHH 166
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 159 GSHHHHHH 166
>pdb|1D2D|A Chain A, Hamster Eprs Second Repeated Element; Nmr, 15 Structures
pdb|1R1B|A Chain A, Eprs Second Repeated Element, Nmr, Minimized Average
Structure
Length = 59
Score = 26.2 bits (56), Expect = 0.77
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 18 THHHHYHGGEHHHHHH 33
T + G EHHHHHH
Sbjct: 44 TGKEYVPGLEHHHHHH 59
Score = 23.9 bits (50), Expect = 3.8
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 9 GGHHHHHHH 17
G HHHHHH
Sbjct: 51 GLEHHHHHH 59
>pdb|1PME| Structure Of Penta Mutant Human Erk2 Map Kinase Complexed With A
Specific Inhibitor Of Human P38 Map Kinase
Length = 380
Score = 26.2 bits (56), Expect = 0.77
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 28 HHHHHHSS 35
HHHHHHSS
Sbjct: 5 HHHHHHSS 12
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 12 HHHHHHT 18
HHHHHH+
Sbjct: 5 HHHHHHS 11
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 5 HHHHHH 10
>pdb|1NCT| Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU| Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 26.2 bits (56), Expect = 0.77
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 28 HHHHHHSS 35
HHHHHHSS
Sbjct: 2 HHHHHHSS 9
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 12 HHHHHHT 18
HHHHHH+
Sbjct: 2 HHHHHHS 8
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 2 HHHHHH 7
>pdb|1I1C|A Chain A, Non-Fcrn Binding Fc Fragment Of Rat Igg2a
pdb|1I1C|B Chain B, Non-Fcrn Binding Fc Fragment Of Rat Igg2a
pdb|1I1A|D Chain D, Crystal Structure Of The Neonatal Fc Receptor Complexed
With A Heterodimeric Fc
Length = 239
Score = 26.2 bits (56), Expect = 0.77
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 6 EQHGGHHHHHHH 17
E G HHHHHH
Sbjct: 228 EGRGSSHHHHHH 239
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 25 GGEHHHHHH 33
G HHHHHH
Sbjct: 231 GSSHHHHHH 239
Score = 23.9 bits (50), Expect = 3.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 5 EEQHGGHHHHHH 16
E + HHHHHH
Sbjct: 228 EGRGSSHHHHHH 239
>pdb|1QOM|A Chain A, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
(Delta 65) With Swapped N-Terminal Hook
pdb|1QOM|B Chain B, Murine Inducible Nitric Oxide Synthase Oxygenase Dimer
(Delta 65) With Swapped N-Terminal Hook
Length = 440
Score = 26.2 bits (56), Expect = 0.77
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 22 HYHGGEHHHHHH 33
H EHHHHHH
Sbjct: 429 HIWQNEHHHHHH 440
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 435 HHHHHH 440
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 435 HHHHHH 440
>pdb|1TIT| Titin, Ig Repeat 27, Nmr, Minimized Average Structure
pdb|1TIU| Titin, Ig Repeat 27, Nmr, 24 Structures
Length = 98
Score = 26.2 bits (56), Expect = 0.77
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 28 HHHHHHSS 35
HHHHHHSS
Sbjct: 2 HHHHHHSS 9
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 12 HHHHHHT 18
HHHHHH+
Sbjct: 2 HHHHHHS 8
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 2 HHHHHH 7
>pdb|1J5Y|A Chain A, Crystal Structure Of Transcriptional Regulator (Tm1602)
From Thermotoga Maritima At 2.3 A Resolution
Length = 187
Score = 26.2 bits (56), Expect = 0.77
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 12 HHHHHHTH 19
HHHHHH H
Sbjct: 7 HHHHHHXH 14
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 7 HHHHHH 12
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 7 HHHHHH 12
Score = 22.7 bits (47), Expect = 8.5
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 11 HHHHHHH 17
HHHHH H
Sbjct: 8 HHHHHXH 14
Score = 22.7 bits (47), Expect = 8.5
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 29 HHHHHSSH 36
HHHHH H
Sbjct: 7 HHHHHHXH 14
>pdb|1BPV| Titin Module A71 From Human Cardiac Muscle, Nmr, 50 Structures
Length = 112
Score = 26.2 bits (56), Expect = 0.77
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 28 HHHHHHSS 35
HHHHHHSS
Sbjct: 2 HHHHHHSS 9
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 12 HHHHHHT 18
HHHHHH+
Sbjct: 2 HHHHHHS 8
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 2 HHHHHH 7
>pdb|1I3O|B Chain B, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase
3
pdb|1I3O|D Chain D, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase
3
Length = 110
Score = 25.8 bits (55), Expect = 1.00
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 18 THHHHYHGGEHHHHHH 33
T +++ EHHHHHH
Sbjct: 95 TKELYFYHLEHHHHHH 110
Score = 23.9 bits (50), Expect = 3.8
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 8 HGGHHHHHH 16
H HHHHHH
Sbjct: 102 HLEHHHHHH 110
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 13 HHHHHTHHHHYH 24
+ +H HHHH+H
Sbjct: 99 YFYHLEHHHHHH 110
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 105 HHHHHH 110
>pdb|1D1R|A Chain A, Nmr Solution Structure Of The Product Of The E. Coli Ycih
Gene
Length = 116
Score = 25.8 bits (55), Expect = 1.00
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 25 GGEHHHHHH 33
G EHHHHHH
Sbjct: 108 GLEHHHHHH 116
Score = 23.9 bits (50), Expect = 3.8
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 9 GGHHHHHHH 17
G HHHHHH
Sbjct: 108 GLEHHHHHH 116
Score = 23.5 bits (49), Expect = 5.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 9 GGHHHHHHH 17
GG HHHHH
Sbjct: 107 GGLEHHHHH 115
Score = 23.5 bits (49), Expect = 5.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 25 GGEHHHHHH 33
GG HHHHH
Sbjct: 107 GGLEHHHHH 115
>pdb|1PLS| Pleckstrin (N-Terminal Pleckstrin Homology Domain) Mutant With Leu
Glu (His)6 Added To The C Terminus (Ins(G105-Lehhhhhh))
(Nmr, 25 Structures)
Length = 113
Score = 25.8 bits (55), Expect = 1.00
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 25 GGEHHHHHH 33
G EHHHHHH
Sbjct: 105 GLEHHHHHH 113
Score = 23.9 bits (50), Expect = 3.8
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 9 GGHHHHHHH 17
G HHHHHH
Sbjct: 105 GLEHHHHHH 113
>pdb|1BGQ| Radicicol Bound To The Atp Binding Site Of The N-Terminal Domain
Of The Yeast Hsp90 Chaperone
Length = 225
Score = 25.8 bits (55), Expect = 1.00
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 26 GEHHHHHHSSHHE 38
G HHHHHH E
Sbjct: 3 GSHHHHHHGMASE 15
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 18 THHHHYHG 25
+HHHH+HG
Sbjct: 4 SHHHHHHG 11
>pdb|1H6Y|A Chain A, The Role Of Conserved Amoni Acids In The Cleft Of The
C-Terminal Family 22 Carbohydrate Binding Module Of
Clostridium Thermocellum Xyn10b In Ligand Binding
pdb|1H6Y|B Chain B, The Role Of Conserved Amoni Acids In The Cleft Of The
C-Terminal Family 22 Carbohydrate Binding Module Of
Clostridium Thermocellum Xyn10b In Ligand Binding
Length = 170
Score = 25.8 bits (55), Expect = 1.00
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 25 GGEHHHHHH 33
G EHHHHHH
Sbjct: 162 GLEHHHHHH 170
Score = 23.9 bits (50), Expect = 3.8
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 9 GGHHHHHHH 17
G HHHHHH
Sbjct: 162 GLEHHHHHH 170
>pdb|1MHC|A Chain A, Model Of Mhc Class I H2-M3 With Nonapeptide From Rat Nd1
Refined At 2.3 Angstroms Resolution
pdb|1MHC|D Chain D, Model Of Mhc Class I H2-M3 With Nonapeptide From Rat Nd1
Refined At 2.3 Angstroms Resolution
Length = 282
Score = 25.8 bits (55), Expect = 1.00
Identities = 10/29 (34%), Positives = 14/29 (47%)
Query: 5 EEQHGGHHHHHHHTHHHHYHGGEHHHHHH 33
E+++ + HH T HHHHHH
Sbjct: 254 EQRYTCYVHHEGLTEPLALKWRSHHHHHH 282
>pdb|1H6X|A Chain A, The Role Of Conserved Amoni Acids In The Cleft Of The
C-Terminal Family 22 Carbohydrate Binding Module Of
Clostridium Thermocellum Xyn10b In Ligand Binding
Length = 170
Score = 25.8 bits (55), Expect = 1.00
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 25 GGEHHHHHH 33
G EHHHHHH
Sbjct: 162 GLEHHHHHH 170
Score = 23.9 bits (50), Expect = 3.8
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 9 GGHHHHHHH 17
G HHHHHH
Sbjct: 162 GLEHHHHHH 170
>pdb|1MGP|A Chain A, Hypothetical Protein Tm841 From Thermotoga Maritima
Reveals Fatty Acid Binding Function
Length = 313
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 9 GGHHHHHHHTH 19
G HHHHHH +
Sbjct: 2 GSSHHHHHHDY 12
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 25 GGEHHHHHH 33
G HHHHHH
Sbjct: 2 GSSHHHHHH 10
>pdb|1J6W|A Chain A, Crystal Structure Of Haemophilus Influenzae Luxs
pdb|1J6W|B Chain B, Crystal Structure Of Haemophilus Influenzae Luxs
Length = 175
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 168 GSHHHHHH 175
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 26 GEHHHHHH 33
G HHHHHH
Sbjct: 168 GSHHHHHH 175
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 168 GSHHHHHH 175
>pdb|3GCB| Gal6 (Yeast Bleomycin Hydrolase) Mutant C73aDELTAK454
Length = 470
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 28 HHHHHHSSHH 37
HHHHHH+S +
Sbjct: 2 HHHHHHASEN 11
Score = 24.6 bits (52), Expect = 2.2
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 11 HHHHHHHTHHHHYHG 25
HHHHHH + + + G
Sbjct: 2 HHHHHHASENLAFQG 16
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 19 HHHHYHGGEH 28
HHHH+H E+
Sbjct: 2 HHHHHHASEN 11
>pdb|1KID| Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues
191-376, Mutant With Ala 262 Replaced With Leu And Ile
267 Replaced With Met
Length = 203
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 26 GEHHHHHH 33
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 18 THHHHYHG 25
+HHHH+HG
Sbjct: 4 SHHHHHHG 11
>pdb|1M0V|A Chain A, Nmr Structure Of The Type Iii Secretory Domain Of Yersinia
Yoph Complexed With The Skap-Hom Phospho-Peptide
N-Acetyl- Depyddpf-Nh2
pdb|1K46|A Chain A, Crystal Structure Of The Type Iii Secretory Domain Of
Yersinia Yoph Reveals A Domain-Swapped Dimer
Length = 136
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 26 GEHHHHHH 33
G HHHHHH
Sbjct: 129 GSHHHHHH 136
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 129 GSHHHHHH 136
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 129 GSHHHHHH 136
>pdb|1JU3|A Chain A, Bacterial Cocaine Esterase Complex With Transition State
Analog
pdb|1JU4|A Chain A, Bacterial Cocaine Esterase Complex With Product
Length = 583
Score = 25.4 bits (54), Expect = 1.3
Identities = 11/26 (42%), Positives = 11/26 (42%)
Query: 8 HGGHHHHHHHTHHHHYHGGEHHHHHH 33
H G H H EHHHHHH
Sbjct: 558 HRGPEHPSHIVLPIIKRPLEHHHHHH 583
>pdb|1QUV|A Chain A, Crystal Structure Of The Rna Directed Rna Polymerase Of
Hepatitis C Virus
Length = 578
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 571 GSHHHHHH 578
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 26 GEHHHHHH 33
G HHHHHH
Sbjct: 571 GSHHHHHH 578
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 571 GSHHHHHH 578
Score = 23.1 bits (48), Expect = 6.5
Identities = 7/18 (38%), Positives = 8/18 (43%)
Query: 15 HHHTHHHHYHGGEHHHHH 32
+H G HHHHH
Sbjct: 561 YHSLSRARPRGSHHHHHH 578
>pdb|1ILG|A Chain A, Crystal Structure Of Apo Human Pregnane X Receptor
Ligand Binding Domain
pdb|1ILH|A Chain A, Crystal Structure Of Human Pregnane X Receptor Ligand
Binding Domain Bound To Sr12813
Length = 316
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 10 GHHHHHH 16
GHHHHHH
Sbjct: 4 GHHHHHH 10
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 19 HHHHYHGGE 27
HHHH+HG E
Sbjct: 5 HHHHHHGSE 13
Score = 24.6 bits (52), Expect = 2.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 28 HHHHHHSS 35
HHHHHH S
Sbjct: 5 HHHHHHGS 12
Score = 23.1 bits (48), Expect = 6.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 26 GEHHHHHHS 34
G HHHHH S
Sbjct: 4 GHHHHHHGS 12
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 5 HHHHHH 10
>pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 556 GSHHHHHH 563
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 26 GEHHHHHH 33
G HHHHHH
Sbjct: 556 GSHHHHHH 563
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 556 GSHHHHHH 563
>pdb|1K74|D Chain D, The 2.3 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Ppargamma And Rxralpha Ligand
Binding Domains Respectively Bound With Gw409544 And
9-Cis Retinoic Acid And Co-Activator Peptides
Length = 283
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 10 GHHHHHH 16
GHHHHHH
Sbjct: 4 GHHHHHH 10
Score = 24.3 bits (51), Expect = 2.9
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 19 HHHHYHGGE 27
HHHH+HG E
Sbjct: 5 HHHHHHGPE 13
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 5 HHHHHH 10
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 5 HHHHHH 10
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 209 GSHHHHHH 216
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 26 GEHHHHHH 33
G HHHHHH
Sbjct: 209 GSHHHHHH 216
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 209 GSHHHHHH 216
>pdb|1A4H| Structure Of The N-Terminal Domain Of The Yeast Hsp90 Chaperone
In Complex With Geldanamycin
Length = 230
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 26 GEHHHHHH 33
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 3 GSHHHHHH 10
Score = 23.5 bits (49), Expect = 5.0
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 25 GGEHHHHHHSS 35
G HHHHH +S
Sbjct: 3 GSHHHHHHMAS 13
>pdb|1QMH|B Chain B, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
pdb|1QMH|A Chain A, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
Length = 347
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 340 GSHHHHHH 347
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 26 GEHHHHHH 33
G HHHHHH
Sbjct: 340 GSHHHHHH 347
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 340 GSHHHHHH 347
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 25 GGEHHHHHH 33
G HHHHHH
Sbjct: 170 GASHHHHHH 178
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 9 GGHHHHHHH 17
G HHHHHH
Sbjct: 170 GASHHHHHH 178
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 315 GSHHHHHH 322
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 26 GEHHHHHH 33
G HHHHHH
Sbjct: 315 GSHHHHHH 322
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 315 GSHHHHHH 322
>pdb|1QRJ|A Chain A, Solution Structure Of Htlv-I Capsid Protein
Length = 15
Score = 25.4 bits (54), Expect = 1.3
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 30 HHHHSSHHEEG 40
HHHHSS H EG
Sbjct: 2 HHHHSSGHIEG 12
>pdb|1JFN|A Chain A, Solution Structure Of Human Apolipoprotein(A) Kringle Iv
Type 6
Length = 119
Score = 25.4 bits (54), Expect = 1.3
Identities = 13/30 (43%), Positives = 15/30 (49%), Gaps = 5/30 (16%)
Query: 28 HHHHHHSSHHEEGCCSTSDSHHQEEGCCHG 57
HHHHHH EG T S ++ C HG
Sbjct: 4 HHHHHHI----EGRAPTEQSPGVQD-CYHG 28
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 4 HHHHHH 9
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 4 HHHHHH 9
>pdb|1FSZ| Crystal Structure Of The Cell-Division Protein Ftsz At 2.8a
Resolution
Length = 372
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 365 GSHHHHHH 372
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 26 GEHHHHHH 33
G HHHHHH
Sbjct: 365 GSHHHHHH 372
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 365 GSHHHHHH 372
>pdb|1MSZ|A Chain A, Solution Structure Of The R3h Domain From Human Smubp-2
Length = 86
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 26 GEHHHHHH 33
G HHHHHH
Sbjct: 79 GSHHHHHH 86
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 7 QHGGHHHHHHH 17
+ G HHHHHH
Sbjct: 76 KRAGSHHHHHH 86
>pdb|1QMI|A Chain A, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
pdb|1QMI|B Chain B, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
pdb|1QMI|C Chain C, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
pdb|1QMI|D Chain D, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An
Ubiquitous Enzyme With Unusual Topology
Length = 347
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 340 GSHHHHHH 347
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 26 GEHHHHHH 33
G HHHHHH
Sbjct: 340 GSHHHHHH 347
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 340 GSHHHHHH 347
>pdb|1IBX|A Chain A, Nmr Structure Of Dff40 And Dff45 N-Terminal Domain
Complex
Length = 86
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 10 GHHHHHH 16
GHHHHHH
Sbjct: 80 GHHHHHH 86
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 81 HHHHHH 86
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 81 HHHHHH 86
>pdb|1HUF|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Tyrosine
Phosphatase Yoph From Yersinia Pestis
Length = 140
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 10 GHHHHHH 16
GHHHHHH
Sbjct: 134 GHHHHHH 140
Score = 23.9 bits (50), Expect = 3.8
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 2 AHHEEQHGGHHHHHHH 17
A +E HHHHHH
Sbjct: 125 ALRQESGARGHHHHHH 140
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 135 HHHHHH 140
>pdb|1JFZ|B Chain B, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
pdb|1JFZ|C Chain C, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
pdb|1JFZ|D Chain D, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
Length = 154
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 147 GRHHHHHH 154
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 26 GEHHHHHH 33
G HHHHHH
Sbjct: 147 GRHHHHHH 154
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 7 QHGGHHHHHH 16
+ G HHHHHH
Sbjct: 145 KEGRHHHHHH 154
>pdb|1A1V|A Chain A, Hepatitis C Virus Ns3 Helicase Domain Complexed With
Single Stranded Dna
Length = 476
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 469 GSHHHHHH 476
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 26 GEHHHHHH 33
G HHHHHH
Sbjct: 469 GSHHHHHH 476
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 469 GSHHHHHH 476
>pdb|1JH7|A Chain A, Semi-Reduced Inhibitor-Bound Cyclic Nucleotide
Phosphodiesterase From Arabidopsis Thaliana
pdb|1JH6|A Chain A, Semi-Reduced Cyclic Nucleotide Phosphodiesterase From
Arabidopsis Thaliana
pdb|1JH6|B Chain B, Semi-Reduced Cyclic Nucleotide Phosphodiesterase From
Arabidopsis Thaliana
pdb|1FSI|A Chain A, Crystal Structure Of Cyclic Nucleotide Phosphodiesterase
Of Appr>p From Arabidopsis Thaliana
pdb|1FSI|C Chain C, Crystal Structure Of Cyclic Nucleotide Phosphodiesterase
Of Appr>p From Arabidopsis Thaliana
pdb|1FSI|B Chain B, Crystal Structure Of Cyclic Nucleotide Phosphodiesterase
Of Appr>p From Arabidopsis Thaliana
Length = 189
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 182 GSHHHHHH 189
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 26 GEHHHHHH 33
G HHHHHH
Sbjct: 182 GSHHHHHH 189
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 182 GSHHHHHH 189
>pdb|1A1R|B Chain B, Hcv Ns3 Protease Domain:ns4a Peptide Complex
Length = 198
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 191 GSHHHHHH 198
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 26 GEHHHHHH 33
G HHHHHH
Sbjct: 191 GSHHHHHH 198
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 191 GSHHHHHH 198
>pdb|1J6U|A Chain A, Crystal Structure Of Udp-N-Acetylmuramate--Alanine
Ligase (Tm0231) From Thermotoga Maritima At 2.3 A
Resolution
Length = 469
Score = 25.4 bits (54), Expect = 1.3
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 28 HHHHHHSSHHEEG 40
HHHHHH H G
Sbjct: 7 HHHHHHXKIHFVG 19
Score = 25.0 bits (53), Expect = 1.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 11 HHHHHHHTHHHHYHGG 26
HHHHHH H GG
Sbjct: 7 HHHHHHXKIHFVGIGG 22
>pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine & Vyp(Isp)ha Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine & Vyp(Isp)ha Substrate
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 25.4 bits (54), Expect = 1.3
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 23 YHGGEHHHHHH 33
Y EHHHHHH
Sbjct: 225 YGWKEHHHHHH 235
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 230 HHHHHH 235
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 230 HHHHHH 235
Score = 22.7 bits (47), Expect = 8.5
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 7 QHGGHHHHHHH 17
++G HHHHH
Sbjct: 224 EYGWKEHHHHH 234
>pdb|1J6X|B Chain B, Crystal Structure Of Helicobacter Pylori Luxs
pdb|1J6X|A Chain A, Crystal Structure Of Helicobacter Pylori Luxs
Length = 160
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 153 GSHHHHHH 160
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 26 GEHHHHHH 33
G HHHHHH
Sbjct: 153 GSHHHHHH 160
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 153 GSHHHHHH 160
>pdb|1J5U|A Chain A, Crystal Structure Of Conserved Hypothetical Protein
(Tm1083) From Thermotoga Maritima At 2.0 A Resolution
Length = 136
Score = 25.4 bits (54), Expect = 1.3
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 12 HHHHHHTHHHHYHGGEHHHHHHSSHHEEGCCSTSDSHHQEEG 53
HHHHHH H + + + +EE + +EEG
Sbjct: 7 HHHHHHXRKPIEHTADIAYEISGNSYEELLEEARNILLEEEG 48
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 7 HHHHHH 12
>pdb|1A6R| Gal6 (Yeast Bleomycin Hydrolase) Mutant C73a
Length = 471
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 28 HHHHHHSSHH 37
HHHHHH+S +
Sbjct: 2 HHHHHHASEN 11
Score = 24.6 bits (52), Expect = 2.2
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 11 HHHHHHHTHHHHYHG 25
HHHHHH + + + G
Sbjct: 2 HHHHHHASENLAFQG 16
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 19 HHHHYHGGEH 28
HHHH+H E+
Sbjct: 2 HHHHHHASEN 11
>pdb|1A1R|A Chain A, Hcv Ns3 Protease Domain:ns4a Peptide Complex
Length = 198
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 9 GGHHHHHH 16
G HHHHHH
Sbjct: 191 GSHHHHHH 198
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 26 GEHHHHHH 33
G HHHHHH
Sbjct: 191 GSHHHHHH 198
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 10 GHHHHHHH 17
G HHHHHH
Sbjct: 191 GSHHHHHH 198
>pdb|1BC9| Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average Structure
Length = 200
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 194 EHHHHHH 200
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 195 HHHHHH 200
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 195 HHHHHH 200
>pdb|1J8C|A Chain A, Solution Structure Of The Ubiquitin-Like Domain Of Hplic-2
Length = 125
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 119 EHHHHHH 125
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 120 HHHHHH 125
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 120 HHHHHH 125
>pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
pdb|1G9U|A Chain A, Crystal Structure Of Yopm-Leucine Rich Effector Protein
From Yersinia Pestis
Length = 454
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 448 EHHHHHH 454
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 449 HHHHHH 454
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 449 HHHHHH 454
>pdb|1E7Z|A Chain A, Crystal Structure Of The Emap2RNA BINDING DOMAIN OF THE
P43 Protein From Human Aminoacyl-Trna Synthetase Complex
Length = 174
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 168 EHHHHHH 174
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 169 HHHHHH 174
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 169 HHHHHH 174
>pdb|1HZT|A Chain A, Crystal Structure Of Metal-Free Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
Length = 190
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 184 EHHHHHH 190
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 185 HHHHHH 190
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 185 HHHHHH 190
>pdb|1L3A|C Chain C, Structure Of The Plant Transcriptional Regulator Pbf-2
Length = 182
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 176 EHHHHHH 182
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 177 HHHHHH 182
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 177 HHHHHH 182
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ BEF3-Bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ BEF3-Bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 149 EHHHHHH 155
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 150 HHHHHH 155
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 150 HHHHHH 155
>pdb|1GD0|A Chain A, Human Macrophage Migration Inhibitory Factor (Mif)
pdb|1GD0|C Chain C, Human Macrophage Migration Inhibitory Factor (Mif)
pdb|1GCZ|A Chain A, Macrophage Migration Inhibitory Factor (Mif) Complexed
With Inhibitor.
pdb|1GCZ|C Chain C, Macrophage Migration Inhibitory Factor (Mif) Complexed
With Inhibitor.
pdb|1GD0|B Chain B, Human Macrophage Migration Inhibitory Factor (Mif)
pdb|1GCZ|B Chain B, Macrophage Migration Inhibitory Factor (Mif) Complexed
With Inhibitor
Length = 122
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 116 EHHHHHH 122
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 117 HHHHHH 122
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 117 HHHHHH 122
>pdb|1HX3|B Chain B, Crystal Structure Of E.Coli Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
pdb|1HX3|A Chain A, Crystal Structure Of E.Coli Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
Length = 190
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 184 EHHHHHH 190
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 185 HHHHHH 190
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 185 HHHHHH 190
>pdb|1A1W| Fadd Death Effector Domain, F25y Mutant, Nmr Minimized Average
Structure
Length = 91
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 85 EHHHHHH 91
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 86 HHHHHH 91
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 86 HHHHHH 91
>pdb|1FXX|A Chain A, The Structure Of Exonuclease I Suggests How Processivity
Is Achieved
Length = 482
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 476 EHHHHHH 482
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 477 HHHHHH 482
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 477 HHHHHH 482
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 599 EHHHHHH 605
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 600 HHHHHH 605
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 600 HHHHHH 605
>pdb|1KBU|A Chain A, Cre Recombinase Bound To A Loxp Holliday Junction
pdb|1KBU|B Chain B, Cre Recombinase Bound To A Loxp Holliday Junction
Length = 349
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/8 (87%), Positives = 8/8 (99%)
Query: 28 HHHHHHSS 35
HHHHHHS+
Sbjct: 2 HHHHHHSN 9
Score = 23.9 bits (50), Expect = 3.8
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 12 HHHHHHTH 19
HHHHHH++
Sbjct: 2 HHHHHHSN 9
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 2 HHHHHH 7
>pdb|1C5K|A Chain A, The Structure Of Tolb, An Essential Component Of The Tol-
Dependent Translocation System And Its Interactions With
The Translocation Domain Of Colicin E9
Length = 439
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 433 EHHHHHH 439
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 434 HHHHHH 439
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 434 HHHHHH 439
>pdb|1K3K|A Chain A, Solution Structure Of A Bcl-2 Homolog From Kaposi's
Sarcoma Virus
Length = 158
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 152 EHHHHHH 158
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 153 HHHHHH 158
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 153 HHHHHH 158
>pdb|1LXL| Nmr Structure Of Bcl-Xl, An Inhibitor Of Programmed Cell Death,
Minimized Average Structure
pdb|1MAZ| X-Ray Structure Of Bcl-Xl, An Inhibitor Of Programmed Cell Death
Length = 221
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 215 EHHHHHH 221
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 216 HHHHHH 221
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 216 HHHHHH 221
>pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F14|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F17|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F14|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F12|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
Length = 310
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 304 EHHHHHH 310
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 305 HHHHHH 310
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 305 HHHHHH 310
>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I
Length = 153
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 147 EHHHHHH 153
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 148 HHHHHH 153
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 148 HHHHHH 153
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 409 EHHHHHH 415
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 410 HHHHHH 415
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 410 HHHHHH 415
>pdb|1RRB| The Ras-Binding Domain Of Raf-1 From Rat, Nmr, 1 Structure
Length = 107
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 101 EHHHHHH 107
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 102 HHHHHH 107
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 102 HHHHHH 107
>pdb|1KXR|B Chain B, Crystal Structure Of Calcium-Bound Protease Core Of
Calpain I
pdb|1KXR|A Chain A, Crystal Structure Of Calcium-Bound Protease Core Of
Calpain I
Length = 339
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 333 EHHHHHH 339
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 334 HHHHHH 339
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 334 HHHHHH 339
>pdb|1JID|A Chain A, Human Srp19 In Complex With Helix 6 Of Human Srp Rna
Length = 128
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 122 EHHHHHH 128
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 123 HHHHHH 128
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 123 HHHHHH 128
>pdb|1DDF| Fas Death Domain, Nmr, Minimized Average Structure
Length = 127
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 121 EHHHHHH 127
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 122 HHHHHH 127
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 122 HHHHHH 127
>pdb|1KKD|A Chain A, Solution Structure Of The Calmodulin Binding Domain
(Cambd) Of Small Conductance Ca2+-Activated Potassium
Channels (Sk2)
Length = 102
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 96 EHHHHHH 102
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 97 HHHHHH 102
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 97 HHHHHH 102
>pdb|1BXL|A Chain A, Structure Of Bcl-XlBAK PEPTIDE COMPLEX, NMR, MINIMIZED
Average Structure
Length = 181
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 175 EHHHHHH 181
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 176 HHHHHH 181
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 176 HHHHHH 181
>pdb|1LN4|A Chain A, Crystal Structure Of E. Coli Yhby
Length = 104
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 98 EHHHHHH 104
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 99 HHHHHH 104
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 99 HHHHHH 104
>pdb|1EFH|B Chain B, Crystal Structure Of The Human Hydroxysteroid
Sulfotransferase In The Presence Of Pap
pdb|1EFH|A Chain A, Crystal Structure Of The Human Hydroxysteroid
Sulfotransferase In The Presence Of Pap
Length = 292
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 286 EHHHHHH 292
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 287 HHHHHH 292
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 287 HHHHHH 292
>pdb|1F0K|A Chain A, The 1.9 Angstrom Crystal Structure Of E. Coli Murg
pdb|1F0K|B Chain B, The 1.9 Angstrom Crystal Structure Of E. Coli Murg
Length = 364
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 358 EHHHHHH 364
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 359 HHHHHH 364
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 359 HHHHHH 364
>pdb|1MM4|A Chain A, Solution Nmr Structure Of The Outer Membrane Enzyme Pagp
In Dpc Micelles
pdb|1MM5|A Chain A, Solution Nmr Structure Of The Outer Membrane Enzyme Pagp
In Og Micelles
Length = 170
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 164 EHHHHHH 170
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 165 HHHHHH 170
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 165 HHHHHH 170
>pdb|1KEZ|A Chain A, Crystal Structure Of The Macrocycle-Forming Thioesterase
Domain Of Erythromycin Polyketide Synthase (Debs Te)
pdb|1KEZ|B Chain B, Crystal Structure Of The Macrocycle-Forming Thioesterase
Domain Of Erythromycin Polyketide Synthase (Debs Te)
pdb|1KEZ|C Chain C, Crystal Structure Of The Macrocycle-Forming Thioesterase
Domain Of Erythromycin Polyketide Synthase (Debs Te)
Length = 300
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 294 EHHHHHH 300
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 295 HHHHHH 300
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 295 HHHHHH 300
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second
Domain), Complexed With Egfr Internalization Peptide
Fyralm
Length = 321
Score = 25.0 bits (53), Expect = 1.7
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 29 HHHHHSSHHEEGCCST 44
HHHHH + E G T
Sbjct: 2 HHHHHHQNSETGALKT 17
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 2 HHHHHH 7
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 2 HHHHHH 7
>pdb|1FL0|A Chain A, Crystal Structure Of The Emap2RNA-Binding Domain Of The
P43 Protein From Human Aminoacyl-Trna Synthetase Complex
Length = 171
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 165 EHHHHHH 171
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 166 HHHHHH 171
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 166 HHHHHH 171
>pdb|1K99|A Chain A, Solution Structure Of The First Hmg Box In Human
Upstream Binding Factor
Length = 99
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 93 EHHHHHH 99
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 94 HHHHHH 99
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 94 HHHHHH 99
>pdb|1UXD| Fructose Repressor Dna-Binding Domain, Nmr, 34 Structures
pdb|1UXC| Fructose Repressor Dna-Binding Domain, Nmr, Minimized Structure
Length = 65
Score = 25.0 bits (53), Expect = 1.7
Identities = 9/21 (42%), Positives = 11/21 (51%), Gaps = 8/21 (38%)
Query: 21 HHYHGG--------EHHHHHH 33
H+YH +HHHHHH
Sbjct: 45 HNYHPNAVAAGLRLQHHHHHH 65
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 60 HHHHHH 65
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 60 HHHHHH 65
>pdb|1MC0|A Chain A, Regulatory Segment Of Mouse 3',5'-Cyclic Nucleotide
Phosphodiesterase 2a, Containing The Gaf A And Gaf B
Domains
Length = 368
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 362 EHHHHHH 368
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 363 HHHHHH 368
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 363 HHHHHH 368
>pdb|1JH3|A Chain A, Solution Structure Of Tyrosyl-Trna Synthetase C-Terminal
Domain
Length = 107
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 101 EHHHHHH 107
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 102 HHHHHH 107
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 102 HHHHHH 107
>pdb|1FNO|A Chain A, Peptidase T (Tripeptidase)
Length = 417
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 411 EHHHHHH 417
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 412 HHHHHH 417
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 412 HHHHHH 417
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 149 EHHHHHH 155
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 150 HHHHHH 155
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 150 HHHHHH 155
>pdb|1K8M|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
Length = 93
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 87 EHHHHHH 93
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 88 HHHHHH 93
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 88 HHHHHH 93
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 272 EHHHHHH 278
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 273 HHHHHH 278
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 273 HHHHHH 278
>pdb|1L8Y|A Chain A, Solution Structure Of Hmg Box 5 In Human Upstream
Binding Factor
pdb|1L8Z|A Chain A, Solution Structure Of Hmg Box 5 In Human Upstream
Binding Factor
Length = 91
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 85 EHHHHHH 91
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 86 HHHHHH 91
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 86 HHHHHH 91
>pdb|1A1Z| Fadd Death Effector Domain, F25g Mutant, Nmr Minimized Average
Structure
Length = 91
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 85 EHHHHHH 91
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 86 HHHHHH 91
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 86 HHHHHH 91
>pdb|1K92|A Chain A, Crystal Structure Of Uncomplexed E. Coli Argininosuccinate
Synthetase
pdb|1KP3|A Chain A, Crystal Structure Of E. Coli Argininosuccinate Synthetase
In Complex With Atp And Citrulline
pdb|1K97|A Chain A, Crystal Structure Of E. Coli Argininosuccinate Synthetase
In Complex With Aspartate And Citrulline
pdb|1KP2|A Chain A, Crystal Structure Of E. Coli Argininosuccinate Synthetase
In Complex With Atp
Length = 455
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 449 EHHHHHH 455
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 450 HHHHHH 455
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 450 HHHHHH 455
>pdb|1MMU|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Glucose
pdb|1MMU|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Glucose
pdb|1MMX|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Fucose
pdb|1MMX|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Fucose
pdb|1MMY|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Quinovose
pdb|1MMY|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Quinovose
pdb|1MMZ|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With L-Arabinose
pdb|1MMZ|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With L-Arabinose
pdb|1MN0|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Xylose
pdb|1MN0|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Xylose
pdb|1L7K|B Chain B, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With Galactose
pdb|1L7K|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With Galactose
pdb|1L7J|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis (Apo)
pdb|1L7J|B Chain B, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis (Apo)
Length = 347
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 341 EHHHHHH 347
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 342 HHHHHH 347
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 342 HHHHHH 347
>pdb|1K2E|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
pdb|1K2E|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
pdb|1K26|A Chain A, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1JRK|D Chain D, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|C Chain C, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1K26|B Chain B, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1JRK|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
Length = 156
Score = 25.0 bits (53), Expect = 1.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 27 EHHHHHH 33
EHHHHHH
Sbjct: 150 EHHHHHH 156
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 151 HHHHHH 156
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 151 HHHHHH 156
>pdb|1GPP|A Chain A, Crystal Structure Of The S.Cerevisiae Homing
Endonuclease Pi-Scei Domain I
Length = 237
Score = 24.6 bits (52), Expect = 2.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 28 HHHHHHSS 35
HHHHHH S
Sbjct: 2 HHHHHHGS 9
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 19 HHHHYHG 25
HHHH+HG
Sbjct: 2 HHHHHHG 8
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 2 HHHHHH 7
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 2 HHHHHH 7
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|G Chain G, Yeast Mitochondrial Processing Peptidase
pdb|1HR7|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR6|E Chain E, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|C Chain C, Yeast Mitochondrial Processing Peptidase
pdb|1HR8|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR7|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR8|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR7|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Length = 475
Score = 24.6 bits (52), Expect = 2.2
Identities = 7/12 (58%), Positives = 9/12 (74%)
Query: 6 EQHGGHHHHHHH 17
++ G HHHHHH
Sbjct: 464 KKKGWFHHHHHH 475
Score = 23.5 bits (49), Expect = 5.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 25 GGEHHHHHH 33
G HHHHHH
Sbjct: 467 GWFHHHHHH 475
>pdb|2FCP|A Chain A, Ferric Hydroxamate Uptake Receptor (Fhua) From E.Coli
Length = 723
Score = 24.6 bits (52), Expect = 2.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 28 HHHHHHSS 35
HHHHHH S
Sbjct: 407 HHHHHHGS 414
Score = 23.9 bits (50), Expect = 3.8
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 15 HHHTHHHHYHG 25
++ +HHHH+HG
Sbjct: 403 YNPSHHHHHHG 413
Score = 23.1 bits (48), Expect = 6.5
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 23 YHGGEHHHHHHS 34
Y+ HHHHH S
Sbjct: 403 YNPSHHHHHHGS 414
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 407 HHHHHH 412
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 407 HHHHHH 412
>pdb|1J5X|A Chain A, Crystal Structure Of Conserved Hypothetical Protein
(Tm0813) From Thermotoga Maritima At 1.8 A Resolution
Length = 342
Score = 24.6 bits (52), Expect = 2.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 28 HHHHHHSS 35
HHHHHH S
Sbjct: 7 HHHHHHXS 14
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 7 HHHHHH 12
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 7 HHHHHH 12
>pdb|1FCP|A Chain A, Ferric Hydroxamate Uptake Receptor (Fhua) From E.Coli In
Complex With Bound Ferrichrome-Iron
Length = 705
Score = 24.6 bits (52), Expect = 2.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 28 HHHHHHSS 35
HHHHHH S
Sbjct: 389 HHHHHHGS 396
Score = 23.9 bits (50), Expect = 3.8
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 15 HHHTHHHHYHG 25
++ +HHHH+HG
Sbjct: 385 YNPSHHHHHHG 395
Score = 23.1 bits (48), Expect = 6.5
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 23 YHGGEHHHHHHS 34
Y+ HHHHH S
Sbjct: 385 YNPSHHHHHHGS 396
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 389 HHHHHH 394
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 389 HHHHHH 394
>pdb|1GV3|A Chain A, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
pdb|1GV3|B Chain B, The 2.0 Angstrom Resolution Structure Of The Catalytic
Portion Of A Cyanobacterial Membrane-Bound Manganese
Superoxide Dismutase
Length = 248
Score = 24.6 bits (52), Expect = 2.2
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 7 QHGGHHHHHH 16
Q HHHHHH
Sbjct: 239 QSNSHHHHHH 248
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 243 HHHHHH 248
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 243 HHHHHH 248
>pdb|1C2P|B Chain B, Hepatitis C Virus Ns5b Rna-Dependent Rna Polymerase
pdb|1C2P|A Chain A, Hepatitis C Virus Ns5b Rna-Dependent Rna Polymerase
Length = 576
Score = 24.6 bits (52), Expect = 2.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Query: 28 HHHHHHS 34
HHHHHHS
Sbjct: 3 HHHHHHS 9
Score = 24.3 bits (51), Expect = 2.9
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 12 HHHHHHTH 19
HHHHHH++
Sbjct: 3 HHHHHHSY 10
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 3 HHHHHH 8
Score = 22.7 bits (47), Expect = 8.5
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 29 HHHHHSSHHEEGCCST 44
HHHHH S+ G T
Sbjct: 3 HHHHHHSYTWTGALIT 18
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 24.6 bits (52), Expect = 2.2
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 27 EHHHHHHSSHHEE 39
+HHHHHH ++ +
Sbjct: 3 KHHHHHHGKNNPD 15
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 19 HHHHYHG 25
HHHH+HG
Sbjct: 4 HHHHHHG 10
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 4 HHHHHH 9
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 4 HHHHHH 9
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
Length = 394
Score = 24.3 bits (51), Expect = 2.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 5 EEQHGGHHHHHH 16
EE HHHHHH
Sbjct: 383 EEWKKKHHHHHH 394
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 27 EHHHHHH 33
+HHHHHH
Sbjct: 388 KHHHHHH 394
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 389 HHHHHH 394
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
Length = 281
Score = 24.3 bits (51), Expect = 2.9
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 7 QHGGHHHHHHH 17
Q HHHHHH
Sbjct: 271 QAAAQHHHHHH 281
Score = 23.9 bits (50), Expect = 3.8
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 27 EHHHHHH 33
+HHHHHH
Sbjct: 275 QHHHHHH 281
>pdb|1J5P|A Chain A, Crystal Structure Of Conserved Hypothetical Protein
(Tm1643) From Thermotoga Maritima At 1.9 A Resolution
Length = 253
Score = 24.3 bits (51), Expect = 2.9
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 11 HHHHHHHT 18
HHHHHH T
Sbjct: 7 HHHHHHMT 14
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 7 HHHHHH 12
>pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The
Hsc70 Atpase Domain
Length = 400
Score = 24.3 bits (51), Expect = 2.9
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 11 HHHHHHHTH 19
+HHHHHH +
Sbjct: 4 YHHHHHHDY 12
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 14 HHHHTHHHHY 23
++HH HHH Y
Sbjct: 3 YYHHHHHHDY 12
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 5 HHHHHH 10
>pdb|1GKZ|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
Complxed With Adp
pdb|1GJV|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
Complxed With Atp-Gamma-S
pdb|1GKX|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
Length = 388
Score = 24.3 bits (51), Expect = 2.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 5 EEQHGGHHHHHH 16
EE HHHHHH
Sbjct: 377 EESFRIHHHHHH 388
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 383 HHHHHH 388
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 383 HHHHHH 388
>pdb|1TOA|A Chain A, Periplasmic Zinc Binding Protein Troa From Treponema
Pallidum
pdb|1TOA|B Chain B, Periplasmic Zinc Binding Protein Troa From Treponema
Pallidum
Length = 313
Score = 24.3 bits (51), Expect = 2.9
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 11 HHHHHHHTH 19
+HHHHHH +
Sbjct: 3 YHHHHHHDY 11
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 14 HHHHTHHHHY 23
++HH HHH Y
Sbjct: 2 YYHHHHHHDY 11
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 4 HHHHHH 9
>pdb|1EGU|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase At 1.56 A Resolution
pdb|1F9G|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase Cocrystallized With Ascorbic Acid
pdb|1C82|A Chain A, Mechanism Of Hyaluronan Binding And Degradation: Structure
Of Streptococcus Pneumoniae Hyaluronate Lyase In Complex
With Hyaluronic Acid Disaccharide At 1.7 A Resolution
Length = 731
Score = 23.9 bits (50), Expect = 3.8
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 27 EHHHHHH 33
+HHHHHH
Sbjct: 725 QHHHHHH 731
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 726 HHHHHH 731
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 726 HHHHHH 731
>pdb|1E5K|A Chain A, Crystal Structure Of The Molybdenum Cofactor Biosynthesis
Protein Moba (Protein Fa) From Escherichia Coli At Near
Atomic Resolution
Length = 201
Score = 23.9 bits (50), Expect = 3.8
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 1 MAHHEEQHGGHHHHH 15
+A +E+ HHHHH
Sbjct: 187 LARWQEKRSHHHHHH 201
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 6 EQHGGHHHHHH 16
++ HHHHHH
Sbjct: 191 QEKRSHHHHHH 201
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 196 HHHHHH 201
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 196 HHHHHH 201
>pdb|1KW4|A Chain A, Polyhomeotic Sam Domain Structure
Length = 89
Score = 23.9 bits (50), Expect = 3.8
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 27 EHHHHHH 33
+HHHHHH
Sbjct: 83 DHHHHHH 89
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 84 HHHHHH 89
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 84 HHHHHH 89
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p
Length = 396
Score = 23.9 bits (50), Expect = 3.8
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 8 HGGHHHHHH 16
H HHHHHH
Sbjct: 388 HWLHHHHHH 396
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 391 HHHHHH 396
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 391 HHHHHH 396
Score = 22.7 bits (47), Expect = 8.5
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 16 HHTHHHHYH 24
H HHHH+H
Sbjct: 388 HWLHHHHHH 396
>pdb|1G5H|D Chain D, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5H|A Chain A, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5H|C Chain C, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5H|B Chain B, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
Length = 454
Score = 23.9 bits (50), Expect = 3.8
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 27 EHHHHHH 33
+HHHHHH
Sbjct: 448 DHHHHHH 454
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 449 HHHHHH 454
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 449 HHHHHH 454
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34 - A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34 - A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34 - A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 23.9 bits (50), Expect = 3.8
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 27 EHHHHHH 33
+HHHHHH
Sbjct: 264 DHHHHHH 270
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 265 HHHHHH 270
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 265 HHHHHH 270
>pdb|1MO0|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Triose
Phosphate Isomerase
pdb|1MO0|B Chain B, Structural Genomics Of Caenorhabditis Elegans: Triose
Phosphate Isomerase
Length = 275
Score = 23.9 bits (50), Expect = 3.8
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 11 HHHHHHH 17
+HHHHHH
Sbjct: 4 YHHHHHH 10
Score = 23.5 bits (49), Expect = 5.0
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 11 HHHHHHHTHHHHYHGG 26
HHHHHH Y G
Sbjct: 5 HHHHHHLESTSLYKAG 20
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 5 HHHHHH 10
>pdb|1JML|A Chain A, Conversion Of Monomeric Protein L To An Obligate Dimer
By Computational Protein Design
Length = 72
Score = 23.9 bits (50), Expect = 3.8
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 19 HHHHYHGGE 27
HHHH+HG E
Sbjct: 2 HHHHHHGME 10
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 2 HHHHHH 7
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 2 HHHHHH 7
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 2 HHHHHH 7
>pdb|1G5I|D Chain D, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5I|A Chain A, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5I|C Chain C, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
pdb|1G5I|B Chain B, Crystal Structure Of The Accessory Subunit Of Murine
Mitochondrial Polymerase Gamma
Length = 454
Score = 23.9 bits (50), Expect = 3.8
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 27 EHHHHHH 33
+HHHHHH
Sbjct: 448 DHHHHHH 454
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 449 HHHHHH 454
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 449 HHHHHH 454
>pdb|2HFH| The Nmr Structures Of A Winged Helix Protein: Genesis, 20
Structures
Length = 109
Score = 23.9 bits (50), Expect = 3.8
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 27 EHHHHHH 33
+HHHHHH
Sbjct: 103 QHHHHHH 109
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 104 HHHHHH 109
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 104 HHHHHH 109
>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The Membrane-
Associated (S)-Mandelate Dehydrogenase From Pseudomonas
Putida At 2.15a Resolution
Length = 380
Score = 23.9 bits (50), Expect = 3.8
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 9 GGHHHHHHH 17
G H HHHHH
Sbjct: 371 GTHAHHHHH 379
Score = 23.9 bits (50), Expect = 3.8
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 17 HTHHHHYH 24
H HHHH+H
Sbjct: 373 HAHHHHHH 380
Score = 23.1 bits (48), Expect = 6.5
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 10 GHHHHHHHTH 19
G H HHHH H
Sbjct: 371 GTHAHHHHHH 380
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 375 HHHHHH 380
>pdb|1J5W|A Chain A, Crystal Structure Of Glycyl-Trna Synthetase Alpha Chain
(Tm0216) From Thermotoga Maritima At 1.95 A Resolution
pdb|1J5W|B Chain B, Crystal Structure Of Glycyl-Trna Synthetase Alpha Chain
(Tm0216) From Thermotoga Maritima At 1.95 A Resolution
Length = 298
Score = 23.9 bits (50), Expect = 3.8
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 12 HHHHHHTH 19
HHHHHH +
Sbjct: 7 HHHHHHXY 14
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 7 HHHHHH 12
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 7 HHHHHH 12
>pdb|1K28|A Chain A, The Structure Of The Bacteriophage T4 Cell-Puncturing
Device
Length = 584
Score = 23.9 bits (50), Expect = 3.8
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 27 EHHHHHH 33
+HHHHHH
Sbjct: 578 DHHHHHH 584
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 579 HHHHHH 584
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 579 HHHHHH 584
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
Length = 220
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 28 HHHHHHS 34
HHHHHH+
Sbjct: 2 HHHHHHA 8
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 2 HHHHHH 7
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 2 HHHHHH 7
>pdb|1K51|A Chain A, A G55a Mutation Induces 3d Domain Swapping In The B1
Domain Of Protein L From Peptostreptococcus Magnus
Length = 72
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 28 HHHHHHS 34
HHHHHH+
Sbjct: 2 HHHHHHA 8
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 2 HHHHHH 7
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 2 HHHHHH 7
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 11 HHHHHHH 17
+HHHHHH
Sbjct: 153 NHHHHHH 159
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 154 HHHHHH 159
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 25 GGEHHHHHH 33
G ++HHHHH
Sbjct: 150 GSKNHHHHH 158
>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 308
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 27 EHHHHHH 33
+HHHHHH
Sbjct: 302 KHHHHHH 308
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 303 HHHHHH 308
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 303 HHHHHH 308
>pdb|1JT0|A Chain A, Crystal Structure Of A Cooperative Qacr-Dna Complex
pdb|1JT0|B Chain B, Crystal Structure Of A Cooperative Qacr-Dna Complex
pdb|1JT0|C Chain C, Crystal Structure Of A Cooperative Qacr-Dna Complex
pdb|1JTX|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Crystal Violet
pdb|1JTX|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Crystal Violet
pdb|1JTX|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Crystal Violet
pdb|1JTX|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Crystal Violet
pdb|1JUP|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Malachite Green
pdb|1JUP|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Malachite Green
pdb|1JUP|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Malachite Green
pdb|1JUP|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To Malachite Green
pdb|1JTY|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Ethidium
pdb|1JTY|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Ethidium
pdb|1JTY|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Ethidium
pdb|1JTY|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Regulator Qacr Bound To Ethidium
pdb|1JUM|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To The Natural Drug Berberine
pdb|1JUM|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To The Natural Drug Berberine
pdb|1JUM|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To The Natural Drug Berberine
pdb|1JUM|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional
Repressor Qacr Bound To The Natural Drug Berberine
pdb|1JT0|D Chain D, Crystal Structure Of A Cooperative Qacr-Dna Complex
Length = 194
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 27 EHHHHHH 33
+HHHHHH
Sbjct: 188 KHHHHHH 194
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 189 HHHHHH 194
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 189 HHHHHH 194
>pdb|1K53|A Chain A, Monomeric Protein L B1 Domain With A G15a Mutation
pdb|1K53|B Chain B, Monomeric Protein L B1 Domain With A G15a Mutation
Length = 72
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 28 HHHHHHS 34
HHHHHH+
Sbjct: 2 HHHHHHA 8
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 2 HHHHHH 7
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 2 HHHHHH 7
>pdb|1K52|B Chain B, Monomeric Protein L B1 Domain With A K54g Mutation
pdb|1K52|A Chain A, Monomeric Protein L B1 Domain With A K54g Mutation
Length = 72
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 28 HHHHHHS 34
HHHHHH+
Sbjct: 2 HHHHHHA 8
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 2 HHHHHH 7
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 2 HHHHHH 7
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
Length = 225
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 28 HHHHHHS 34
HHHHHH+
Sbjct: 2 HHHHHHA 8
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 12 HHHHHH 17
HHHHHH
Sbjct: 2 HHHHHH 7
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 11 HHHHHH 16
HHHHHH
Sbjct: 2 HHHHHH 7
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 23.5 bits (49), Expect = 5.0
Identities = 6/7 (85%), Positives = 7/7 (99%)
Query: 11 HHHHHHH 17
+HHHHHH
Sbjct: 361 NHHHHHH 367
Score = 23.1 bits (48), Expect = 6.5
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 28 HHHHHH 33
HHHHHH
Sbjct: 362 HHHHHH 367
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.132 0.518
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,935
Number of Sequences: 13198
Number of extensions: 21848
Number of successful extensions: 2244
Number of sequences better than 10.0: 313
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71
Number of HSP's gapped (non-prelim): 1594
length of query: 60
length of database: 2,899,336
effective HSP length: 36
effective length of query: 24
effective length of database: 2,424,208
effective search space: 58180992
effective search space used: 58180992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)