BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646037|ref|NP_208219.1| conserved hypothetical
protein [Helicobacter pylori 26695]
         (357 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|3YPI|A  Chain A, Electrophilic Catalysis In Triosephosph...    27  3.6
pdb|7TIM|A  Chain A, Triosephosphate Isomerase (E.C.5.3.1.1)...    27  3.6
pdb|1AT5|    Hen Egg White Lysozyme With A Succinimide Residue     27  4.7

>pdb|3YPI|A Chain A, Electrophilic Catalysis In Triosephosphase Isomerase: The
           Role Of Histidine-95
 pdb|3YPI|B Chain B, Electrophilic Catalysis In Triosephosphase Isomerase: The
           Role Of Histidine-95
          Length = 247

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 16/51 (31%), Positives = 25/51 (48%), Gaps = 2/51 (3%)

Query: 207 VADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
           +ADK     G+ +GV L I     + K   +L  + ++ N   VL EV+ W
Sbjct: 108 IADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLN--AVLEEVKDW 156



>pdb|7TIM|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1) Complex With
           Phosphoglycolohydroxamate
 pdb|7TIM|B Chain B, Triosephosphate Isomerase (E.C.5.3.1.1) Complex With
           Phosphoglycolohydroxamate
 pdb|1YPI|A Chain A, Structure Of Yeast Triosephosphate Isomerase At 1.9
           Angstroms Resolution
 pdb|1YPI|B Chain B, Structure Of Yeast Triosephosphate Isomerase At 1.9
           Angstroms Resolution
 pdb|2YPI|A Chain A, Crystallographic Analysis Of The Complex Between
           Triosephosphate Isomerase And 2-Phosphoglycolate At 2.5
 pdb|2YPI|B Chain B, Crystallographic Analysis Of The Complex Between
           Triosephosphate Isomerase And 2-Phosphoglycolate At 2.5
          Length = 247

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 16/51 (31%), Positives = 25/51 (48%), Gaps = 2/51 (3%)

Query: 207 VADKIPILAGKNLGVQLAISLHAVDDKTRSSLMPLNKKYNIECVLNEVRKW 257
           +ADK     G+ +GV L I     + K   +L  + ++ N   VL EV+ W
Sbjct: 108 IADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLN--AVLEEVKDW 156



>pdb|1AT5|   Hen Egg White Lysozyme With A Succinimide Residue
          Length = 129

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 11/27 (40%), Positives = 18/27 (65%)

Query: 270 LLIKDLNDSLDCAKKLLKLLNGIKSKV 296
           LL  D+  S++CAKK++   NG+ + V
Sbjct: 83  LLSSDITASVNCAKKIVSXXNGMNAWV 109



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.321    0.137    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,875,901
Number of Sequences: 13198
Number of extensions: 74093
Number of successful extensions: 322
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 3
length of query: 357
length of database: 2,899,336
effective HSP length: 89
effective length of query: 268
effective length of database: 1,724,714
effective search space: 462223352
effective search space used: 462223352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)