BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646045|ref|NP_208227.1| hypothetical protein
[Helicobacter pylori 26695]
(82 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1A0R|P Chain P, Heterotrimeric Complex Of PhosducinTRAN... 26 0.88
pdb|1B9X|C Chain C, Structural Analysis Of Phosducin And It... 26 0.88
pdb|1IRU|K Chain K, Crystal Structure Of The Mammalian 20s ... 24 2.6
pdb|1CLZ|H Chain H, Igg Fab (Igg3, Kappa) Fragment (Mbr96) ... 24 3.3
pdb|1B9Y|C Chain C, Structural Analysis Of Phosducin And It... 24 3.3
pdb|1H6Z|A Chain A, 3.0 A Resolution Crystal Structure Of G... 23 4.4
pdb|2TRC|P Chain P, PhosducinTRANSDUCIN BETA-Gamma Complex 23 5.7
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Re... 23 7.5
pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor,... 23 7.5
pdb|1R24|B Chain B, Fab From Murine Igg3 Kappa >gi|6573656|... 23 7.5
pdb|1ETU| Elongation Factor Tu (Domain I) - Guanosine Dip... 23 7.5
pdb|1EFM| Trypsin-Modified Elongation Factor Tu (EF-Tu-GDP) 23 7.5
pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts Fr... 23 7.5
pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Fac... 23 7.5
pdb|1CB8|A Chain A, Chondroitinase Ac Lyase From Flavobacte... 22 9.7
pdb|1HM2|A Chain A, Active Site Of Chondroitinase Ac Lyase ... 22 9.7
>pdb|1A0R|P Chain P, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 245
Score = 25.8 bits (55), Expect = 0.88
Identities = 12/38 (31%), Positives = 24/38 (62%), Gaps = 3/38 (7%)
Query: 42 KISRSIEKPDNMTEEERKKRF---IELQKACLLHKDKK 76
+I R + P + +++ K+RF + +Q+ L+HKDK+
Sbjct: 48 EILRQMSSPQSRDDKDSKERFSRKMSVQEYELIHKDKE 85
>pdb|1B9X|C Chain C, Structural Analysis Of Phosducin And Its
Phosphorylation- Regulated Interaction With Transducin
Length = 246
Score = 25.8 bits (55), Expect = 0.88
Identities = 16/43 (37%), Positives = 25/43 (57%), Gaps = 5/43 (11%)
Query: 39 PTSK--ISRSIEKP---DNMTEEERKKRFIELQKACLLHKDKK 76
P SK I R + P D+ +ER R +E+Q+ L+H+DK+
Sbjct: 43 PPSKKEILRQMSSPQSRDDKDSKERMSRKMEIQEYELIHQDKE 85
>pdb|1IRU|K Chain K, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Y Chain Y, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 201
Score = 24.3 bits (51), Expect = 2.6
Identities = 16/62 (25%), Positives = 28/62 (44%)
Query: 20 AALGFYAVNKLGYVPQFNTPTSKISRSIEKPDNMTEEERKKRFIELQKACLLHKDKKACE 79
AA G+ A L + ++ TPT R++E EE +K+ + L + DK
Sbjct: 130 AAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIH 189
Query: 80 EV 81
++
Sbjct: 190 DL 191
>pdb|1CLZ|H Chain H, Igg Fab (Igg3, Kappa) Fragment (Mbr96) Complexed With
Lewis Y Nonoate Methyl Ester
Length = 218
Score = 23.9 bits (50), Expect = 3.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 23 GFYAVNKLGYVPQFNTPTSKISRSIEKPDNMTE 55
GFY+++ L VP P+ + ++ P + TE
Sbjct: 178 GFYSLSSLVTVPSSTWPSQTVICNVAHPASKTE 210
>pdb|1B9Y|C Chain C, Structural Analysis Of Phosducin And Its
Phosphorylation- Regulated Interaction With Transducin
Beta-Gamma
Length = 246
Score = 23.9 bits (50), Expect = 3.3
Identities = 15/43 (34%), Positives = 24/43 (54%), Gaps = 5/43 (11%)
Query: 39 PTSK--ISRSIEKP---DNMTEEERKKRFIELQKACLLHKDKK 76
P SK I R + P D+ +ER R + +Q+ L+H+DK+
Sbjct: 43 PPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQEYELIHQDKE 85
>pdb|1H6Z|A Chain A, 3.0 A Resolution Crystal Structure Of Glycosomal Pyruvate
Phosphate Dikinase From Trypanosoma Brucei
Length = 913
Score = 23.5 bits (49), Expect = 4.4
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 23 GFYAVNKLG--YVPQFNTPTSKISRSIE----KPDNMTEEERKKRFIELQKA 68
G Y VN G V TP +I+ S+ K + EEER+KR+ +++A
Sbjct: 275 GEYLVNAQGEDVVAGIRTP-QQINHSLSLRWAKAHGVGEEERRKRYPSMEEA 325
>pdb|2TRC|P Chain P, PhosducinTRANSDUCIN BETA-Gamma Complex
Length = 217
Score = 23.1 bits (48), Expect = 5.7
Identities = 15/43 (34%), Positives = 23/43 (52%), Gaps = 5/43 (11%)
Query: 39 PTSK--ISRSIEKP---DNMTEEERKKRFIELQKACLLHKDKK 76
P SK I R + P D+ +ER R +Q+ L+H+DK+
Sbjct: 30 PPSKKEILRQMSSPQSRDDKDSKERXSRKXSIQEYELIHQDKE 72
>pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
Length = 393
Score = 22.7 bits (47), Expect = 7.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 31 GYVPQFNTPTSKISRSIEKPDNM 53
GY PQF T+ ++ +IE P+ +
Sbjct: 325 GYRPQFYFRTTDVTGTIELPEGV 347
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
Length = 393
Score = 22.7 bits (47), Expect = 7.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 31 GYVPQFNTPTSKISRSIEKPDNM 53
GY PQF T+ ++ +IE P+ +
Sbjct: 325 GYRPQFYFRTTDVTGTIELPEGV 347
>pdb|1R24|B Chain B, Fab From Murine Igg3 Kappa
pdb|1R24|D Chain D, Fab From Murine Igg3 Kappa
Length = 217
Score = 22.7 bits (47), Expect = 7.5
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 23 GFYAVNKLGYVPQFNTPTSKISRSIEKPDNMTE 55
GFY+++ L VP P+ + ++ P + T+
Sbjct: 182 GFYSLSSLVTVPSSTWPSQTVICNVAHPASKTD 214
>pdb|1ETU| Elongation Factor Tu (Domain I) - Guanosine Diphosphate Complex
Length = 394
Score = 22.7 bits (47), Expect = 7.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 31 GYVPQFNTPTSKISRSIEKPDNM 53
GY PQF T+ ++ +IE P+ +
Sbjct: 326 GYRPQFYFRTTDVTGTIELPEGV 348
>pdb|1EFM| Trypsin-Modified Elongation Factor Tu (EF-Tu-GDP)
Length = 393
Score = 22.7 bits (47), Expect = 7.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 31 GYVPQFNTPTSKISRSIEKPDNM 53
GY PQF T+ ++ +IE P+ +
Sbjct: 325 GYRPQFYFRTTDVTGTIELPEGV 347
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 22.7 bits (47), Expect = 7.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 31 GYVPQFNTPTSKISRSIEKPDNM 53
GY PQF T+ ++ +IE P+ +
Sbjct: 317 GYRPQFYFRTTDVTGTIELPEGV 339
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 22.7 bits (47), Expect = 7.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 31 GYVPQFNTPTSKISRSIEKPDNM 53
GY PQF T+ ++ +IE P+ +
Sbjct: 326 GYRPQFYFRTTDVTGTIELPEGV 348
>pdb|1CB8|A Chain A, Chondroitinase Ac Lyase From Flavobacterium Heparinum
Length = 678
Score = 22.3 bits (46), Expect = 9.7
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 45 RSIEKPDNMTEEERKKRFIELQKACLLHKDKKA 77
R + +PD + ++ KKR + + L H ++ A
Sbjct: 266 RGVSRPDILNKKAEKKRLLVAKMIDLKHTEEWA 298
>pdb|1HM2|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-Oligosaccharide Complexes And
Mutagenesis
pdb|1HMU|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-Oligosaccharide Complexes And
Mutagenesis
pdb|1HM3|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-Oligosaccharide Complexes And
Mutagenesis
pdb|1HMW|A Chain A, Active Site Of Chondroitinase Ac Lyase Revealed By The
Structure Of Enzyme-Oligosaccharide Complexes And
Mutagenesis
Length = 700
Score = 22.3 bits (46), Expect = 9.7
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 45 RSIEKPDNMTEEERKKRFIELQKACLLHKDKKA 77
R + +PD + ++ KKR + + L H ++ A
Sbjct: 288 RGVSRPDILNKKAEKKRLLVAKMIDLKHTEEWA 320
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.324 0.138 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,810
Number of Sequences: 13198
Number of extensions: 14185
Number of successful extensions: 52
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 16
length of query: 82
length of database: 2,899,336
effective HSP length: 58
effective length of query: 24
effective length of database: 2,133,852
effective search space: 51212448
effective search space used: 51212448
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)