BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646046|ref|NP_208228.1| hypothetical protein
[Helicobacter pylori 26695]
         (239 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1MN4|A  Chain A, Structure Of Ndt80 (Residues 59-340) Dn...    27  2.7
pdb|1M6U|A  Chain A, Crystal Structure Of A Novel Dna-Bindin...    27  2.7
pdb|1L4A|D  Chain D, X-Ray Structure Of The Neuronal Complex...    25  6.1
pdb|1F3H|A  Chain A, X-Ray Crystal Structure Of The Human An...    25  6.1
pdb|1E31|B  Chain B, Survivin Dimer H. Sapiens >gi|13096773|...    25  6.1
pdb|1EHY|A  Chain A, X-Ray Structure Of The Epoxide Hydrolas...    25  7.9

>pdb|1MN4|A Chain A, Structure Of Ndt80 (Residues 59-340) Dna-Binding Domain
           Core
          Length = 282

 Score = 26.6 bits (57), Expect = 2.7
 Identities = 9/22 (40%), Positives = 16/22 (71%)

Query: 115 IDSLFWDYKDDVLNKLARYDDI 136
           +DSL + Y +D + K+ARY+ +
Sbjct: 176 VDSLLFSYPEDSIQKVARYERV 197



>pdb|1M6U|A Chain A, Crystal Structure Of A Novel Dna-Binding Domain From
           Ndt80, A Transcriptional Activator Required For Meiosis
           In Yeast
 pdb|1M6U|B Chain B, Crystal Structure Of A Novel Dna-Binding Domain From
           Ndt80, A Transcriptional Activator Required For Meiosis
           In Yeast
 pdb|1M7U|A Chain A, Crystal Structure Of A Novel Dna-Binding Domain From
           Ndt80, A Transcriptional Activator Required For Meiosis
           In Yeast
 pdb|1M7U|B Chain B, Crystal Structure Of A Novel Dna-Binding Domain From
           Ndt80, A Transcriptional Activator Required For Meiosis
           In Yeast
          Length = 272

 Score = 26.6 bits (57), Expect = 2.7
 Identities = 9/22 (40%), Positives = 16/22 (71%)

Query: 115 IDSLFWDYKDDVLNKLARYDDI 136
           +DSL + Y +D + K+ARY+ +
Sbjct: 176 VDSLLFSYPEDSIQKVARYERV 197



>pdb|1L4A|D Chain D, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
          From The Squid Loligo Pealei
          Length = 87

 Score = 25.4 bits (54), Expect = 6.1
 Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 21 SENQSILKPSARSSNNQAHQVDETAKKIDKLIKN 54
          S+N+ + +   ++ +N++ ++DE  KK  KL+KN
Sbjct: 55 SQNRQVDRIQQKAESNES-RIDEANKKATKLLKN 87



>pdb|1F3H|A Chain A, X-Ray Crystal Structure Of The Human Anti-Apoptotic
           Protein Survivin
 pdb|1F3H|B Chain B, X-Ray Crystal Structure Of The Human Anti-Apoptotic
           Protein Survivin
          Length = 142

 Score = 25.4 bits (54), Expect = 6.1
 Identities = 12/39 (30%), Positives = 25/39 (63%), Gaps = 5/39 (12%)

Query: 15  KVDLDSSENQSILKPSARSSNNQAHQVDETAKKIDKLIK 53
           K+D + ++N+      A+ +NN+  + +ETAKK+ + I+
Sbjct: 103 KLDRERAKNKI-----AKETNNKKKEFEETAKKVRRAIE 136



>pdb|1E31|B Chain B, Survivin Dimer H. Sapiens
 pdb|1E31|A Chain A, Survivin Dimer H. Sapiens
          Length = 142

 Score = 25.4 bits (54), Expect = 6.1
 Identities = 12/39 (30%), Positives = 25/39 (63%), Gaps = 5/39 (12%)

Query: 15  KVDLDSSENQSILKPSARSSNNQAHQVDETAKKIDKLIK 53
           K+D + ++N+      A+ +NN+  + +ETAKK+ + I+
Sbjct: 103 KLDRERAKNKI-----AKETNNKKKEFEETAKKVRRAIE 136



>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
           Agrobacterium Radiobacter Ad1
 pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
           Agrobacterium Radiobacter Ad1
 pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
           Agrobacterium Radiobacter Ad1
 pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
           Agrobacterium Radiobacter Ad1
          Length = 294

 Score = 25.0 bits (53), Expect = 7.9
 Identities = 20/70 (28%), Positives = 28/70 (39%), Gaps = 11/70 (15%)

Query: 69  IKEAFFSPFKPQLKNAQVFLSHSHA-------DRNKALEVKDYLESQTKR--KVFIDSLF 119
           IK A F P +P        L H H          + A+EV        K+  K F D   
Sbjct: 125 IKAAIFDPIQPDFGPVYFGLGHVHESWYSQFHQLDMAVEVVGSSREVCKKYFKHFFD--H 182

Query: 120 WDYKDDVLNK 129
           W Y+D++L +
Sbjct: 183 WSYRDELLTE 192



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.316    0.132    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,226,124
Number of Sequences: 13198
Number of extensions: 48378
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 6
length of query: 239
length of database: 2,899,336
effective HSP length: 86
effective length of query: 153
effective length of database: 1,764,308
effective search space: 269939124
effective search space used: 269939124
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)