BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646047|ref|NP_208229.1| conserved hypothetical
lipoprotein [Helicobacter pylori 26695]
         (338 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1DEQ|B  Chain B, The Crystal Structure Of Modified Bovin...    35  0.016
pdb|1G8X|A  Chain A, Structure Of A Genetically Engineered M...    27  2.5
pdb|1HJB|D  Chain D, Crystal Structure Of Runx-1AML1CBFALPHA...    27  4.3
pdb|1HOW|A  Chain A, The X-Ray Crystal Structure Of Sky1p, A...    26  5.7
pdb|1EI1|A  Chain A, Dimerization Of E. Coli Dna Gyrase B Pr...    26  5.7
pdb|1H72|C  Chain C, Crystal Structure Of Homoserine Kinase ...    26  7.4
pdb|2SPC|A  Chain A, Spectrin (One Repeat Unit) >gi|576412|p...    25  9.6
pdb|1C1G|A  Chain A, Crystal Structure Of Tropomyosin At 7 A...    25  9.6

>pdb|1DEQ|B Chain B, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
           Angstrom Resolution)
 pdb|1DEQ|E Chain E, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
           Angstrom Resolution)
 pdb|1DEQ|O Chain O, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
           Angstrom Resolution)
 pdb|1DEQ|R Chain R, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
           Angstrom Resolution)
          Length = 408

 Score = 34.7 bits (78), Expect = 0.016
 Identities = 43/175 (24%), Positives = 76/175 (42%), Gaps = 28/175 (16%)

Query: 177 AIEDTKNPKD---------YPYINL-KELKKLIDSIIDDHGYMADGFLNEYSNRVSKKGL 226
           +IED +N  D         + YI L K + K   + + D+    +  +NEYS+ + K  L
Sbjct: 43  SIEDLRNTVDSVSRTSSSTFQYITLLKNMWKGRQNQVQDN----ENVVNEYSSHLEKHQL 98

Query: 227 QILAKLKSMWPS---VGKFYFASLKEAIPRHAKEVTDKMISSEEKSIKANQVKLTEAKQD 283
            I   +K+  P+   V +    +L+  I +   +V+ +M            + +   K+ 
Sbjct: 99  YIDETVKNNIPTKLRVLRSILENLRSKIQKLESDVSTQMEYCRTPCTVTCNIPVVSGKE- 157

Query: 284 IDKMEKIIKDLESKKNTLSVYLKFGESFTAHYKCQNLIEVGVKTDKGSWTFNFNR 338
               EKII++   +  T  +YL   E  +  Y+    +   +KT+KG WT   NR
Sbjct: 158 ---CEKIIRN---EGETSEMYLIQPEDSSKPYR----VYCDMKTEKGGWTVIQNR 202



>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
 pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
          Length = 1010

 Score = 27.3 bits (59), Expect = 2.5
 Identities = 22/76 (28%), Positives = 38/76 (49%), Gaps = 7/76 (9%)

Query: 252 PRHAKEVTDKMISSEEKSIKANQVKLTEAKQD---IDKMEKIIKDLESKKNTLSVYL--- 305
           P         +  +E++  +A +++L   K+    + K  +I+K LE+   T SVYL   
Sbjct: 853 PNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSN 912

Query: 306 KFGESFTA-HYKCQNL 320
           + G+S TA   K +NL
Sbjct: 913 ETGDSITAVQAKLKNL 928



>pdb|1HJB|D Chain D, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
           CEBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE
           Csf-1r Promoter
 pdb|1HJB|E Chain E, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
           CEBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE
           Csf-1r Promoter
 pdb|1HJB|B Chain B, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
           CEBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE
           Csf-1r Promoter
 pdb|1HJB|A Chain A, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN AND
           CEBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE
           Csf-1r Promoter
          Length = 87

 Score = 26.6 bits (57), Expect = 4.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 86  EKEKAIKNHQAKIARLQKDLEELTQHVQQSNNLDKLLENGGLFVSGH 132
           E +  +    A+  RLQK +E+L++ +    NL K L    L  SGH
Sbjct: 40  ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLLASSGH 86



>pdb|1HOW|A Chain A, The X-Ray Crystal Structure Of Sky1p, An Sr Protein Kinase
           In Yeast
          Length = 373

 Score = 26.2 bits (56), Expect = 5.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 120 KLLENGGLFVSGHDYKYTKDDNPIYVVKRMLDNLDSY 156
           +L+    LF     + YTKDD+ I  +  +L  L SY
Sbjct: 227 ELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSY 263



>pdb|1EI1|A Chain A, Dimerization Of E. Coli Dna Gyrase B Provides A Structural
           Mechanism For Activating The Atpase Catalytic Center
 pdb|1EI1|B Chain B, Dimerization Of E. Coli Dna Gyrase B Provides A Structural
           Mechanism For Activating The Atpase Catalytic Center
          Length = 391

 Score = 26.2 bits (56), Expect = 5.7
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 214 LNEYSNRVSKKGLQILAKLKSMWPSV--GKFYFASLKEAIPRHAKEVTDKMISSEEKSIK 271
           LN Y   + K+G    AK+ +       G     S+K   P+ + +  DK++SSE KS  
Sbjct: 292 LNAY---MDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 348

Query: 272 ANQV 275
             Q+
Sbjct: 349 EQQM 352



>pdb|1H72|C Chain C, Crystal Structure Of Homoserine Kinase Complexed With Hse
 pdb|1H74|A Chain A, Crystal Structure Of Homoserine Kinase Complexed With Ile
 pdb|1H74|B Chain B, Crystal Structure Of Homoserine Kinase Complexed With Ile
 pdb|1H74|C Chain C, Crystal Structure Of Homoserine Kinase Complexed With Ile
 pdb|1H74|D Chain D, Crystal Structure Of Homoserine Kinase Complexed With Ile
 pdb|1H73|A Chain A, Crystal Structure Of Homoserine Kinase Complexed With
           Threonine
 pdb|1FWK|A Chain A, Crystal Structure Of Homoserine Kinase Complexed With Adp
 pdb|1FWK|B Chain B, Crystal Structure Of Homoserine Kinase Complexed With Adp
 pdb|1FWK|C Chain C, Crystal Structure Of Homoserine Kinase Complexed With Adp
 pdb|1FWK|D Chain D, Crystal Structure Of Homoserine Kinase Complexed With Adp
 pdb|1FWL|A Chain A, Crystal Structure Of Homoserine Kinase
 pdb|1FWL|B Chain B, Crystal Structure Of Homoserine Kinase
 pdb|1FWL|C Chain C, Crystal Structure Of Homoserine Kinase
 pdb|1FWL|D Chain D, Crystal Structure Of Homoserine Kinase
          Length = 296

 Score = 25.8 bits (55), Expect = 7.4
 Identities = 33/145 (22%), Positives = 58/145 (39%), Gaps = 26/145 (17%)

Query: 158 YESDDVLDVPYEKLLEISIAIEDTKNPKDYPYINLKELKKLIDSIIDDHGYMADGFLNEY 217
           YE  +VL +P +  L+I IAI +         IN KE ++++   +          L + 
Sbjct: 152 YEPLEVLHIPIDFKLDILIAIPNIS-------INTKEAREILPKAVG---------LKDL 195

Query: 218 SNRVSKKGLQILAKLKSMWPSVGKFYFASLKEAIPRHAKEVTDKMISSEEKSIKANQVKL 277
            N V K    + A         G+ Y  S K   P   K + +     EE   K   + +
Sbjct: 196 VNNVGKACGMVYALYNKDKSLFGR-YMMSDKVIEPVRGKLIPNYFKIKEEVKDKVYGITI 254

Query: 278 TEA---------KQDIDKMEKIIKD 293
           + +         ++ ID++E I++D
Sbjct: 255 SGSGPSIIAFPKEEFIDEVENILRD 279



>pdb|2SPC|A Chain A, Spectrin (One Repeat Unit)
 pdb|2SPC|B Chain B, Spectrin (One Repeat Unit)
          Length = 107

 Score = 25.4 bits (54), Expect = 9.6
 Identities = 12/31 (38%), Positives = 18/31 (57%)

Query: 88  EKAIKNHQAKIARLQKDLEELTQHVQQSNNL 118
           +KAI  H+ KIA LQ   ++L      ++NL
Sbjct: 49  DKAINGHEQKIAALQTVADQLIAQNHYASNL 79



>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
           In The Spermine-Induced Crystal Form
 pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
           In The Spermine-Induced Crystal Form
 pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
           In The Spermine-Induced Crystal Form
 pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
           In The Spermine-Induced Crystal Form
          Length = 284

 Score = 25.4 bits (54), Expect = 9.6
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 8/50 (16%)

Query: 248 KEAIPRHAKEVTDKMISSEEKSIKANQVKLTEAKQDIDKMEKIIKDLESK 297
           K+A    +K++ D+++S ++K      +K TE   ++DK  + +KD + K
Sbjct: 29  KKAAEDRSKQLEDELVSLQKK------LKATE--DELDKYSEALKDAQEK 70



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.314    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,926,268
Number of Sequences: 13198
Number of extensions: 79272
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 9
length of query: 338
length of database: 2,899,336
effective HSP length: 89
effective length of query: 249
effective length of database: 1,724,714
effective search space: 429453786
effective search space used: 429453786
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)