BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646048|ref|NP_208230.1| hypothetical protein
[Helicobacter pylori 26695]
         (81 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|2LDX|    Apo-Lactate Dehydrogenase (E.C.1.1.1.27), Isoen...    24  3.4
pdb|1NKL|    Nk-Lysin From Pig, Nmr, 20 Structures                 23  5.7

>pdb|2LDX|   Apo-Lactate Dehydrogenase (E.C.1.1.1.27), Isoenzyme C4
          Length = 331

 Score = 23.9 bits (50), Expect = 3.4
 Identities = 13/52 (25%), Positives = 26/52 (50%)

Query: 1   MDNSTDRAKILIEELKILQGVINRMAQNSLECKKWTLALAVGVLSLKIEAIS 52
           M +   R  +L   + I++ ++  + QNS +CK   +   V +L+  +  IS
Sbjct: 99  MVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVDILTYVVWKIS 150



>pdb|1NKL|   Nk-Lysin From Pig, Nmr, 20 Structures
          Length = 78

 Score = 23.1 bits (48), Expect = 5.7
 Identities = 10/36 (27%), Positives = 20/36 (54%)

Query: 2  DNSTDRAKILIEELKILQGVINRMAQNSLECKKWTL 37
          D  T  A  + ++LKIL+G+  ++ ++ L    W +
Sbjct: 25 DTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWDI 60



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.329    0.141    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 370,125
Number of Sequences: 13198
Number of extensions: 10239
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 2
length of query: 81
length of database: 2,899,336
effective HSP length: 57
effective length of query: 24
effective length of database: 2,147,050
effective search space: 51529200
effective search space used: 51529200
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 46 (22.3 bits)