BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646049|ref|NP_208231.1| hypothetical protein
[Helicobacter pylori 26695]
(259 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1MWS|A Chain A, Structure Of Nitrocefin Acyl-Penicillin... 31 0.16
pdb|1MWX|A Chain A, Structure Of Penicillin Binding Protein... 31 0.16
pdb|1MWR|A Chain A, Structure Of Semet Penicillin Binding P... 28 0.81
pdb|1CRM| Carbonic Anhydrase I (Carbonate Dehydratase I, ... 28 1.4
pdb|2CAB| Carbonic Anhydrase Form B (Carbonate Dehydratas... 28 1.4
pdb|1JV0|A Chain A, The Crystal Structure Of The Zinc(Ii) A... 27 3.1
pdb|1CZM| Drug-Protein Interactions: Structure Of Sulfona... 26 4.0
pdb|1NFD|A Chain A, An Alpha-Beta T Cell Receptor (Tcr) Het... 26 4.0
pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical I... 25 6.9
>pdb|1MWS|A Chain A, Structure Of Nitrocefin Acyl-Penicillin Binding Protein 2a
From Methicillin Resistant Staphylococcus Aureus Strain
27r At 2.00 A Resolution.
pdb|1MWS|B Chain B, Structure Of Nitrocefin Acyl-Penicillin Binding Protein 2a
From Methicillin Resistant Staphylococcus Aureus Strain
27r At 2.00 A Resolution.
pdb|1MWT|A Chain A, Structure Of Penicillin G Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.45 A Resolution.
pdb|1MWT|B Chain B, Structure Of Penicillin G Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.45 A Resolution.
pdb|1MWU|A Chain A, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution.
pdb|1MWU|B Chain B, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution
Length = 646
Score = 30.8 bits (68), Expect = 0.16
Identities = 34/132 (25%), Positives = 56/132 (41%), Gaps = 23/132 (17%)
Query: 67 KNGRYIASSETLYSNGLYPKTILAKMQDSSAKELICIASLRLEAMDRN----QGLSLLKT 122
+N +A++ T Y G+ PK + K + AKEL + MD+N LKT
Sbjct: 135 RNNVELANTGTAYEIGIVPKNVSKKDYKAIAKELSISEDYIKQQMDQNWVQDDTFVPLKT 194
Query: 123 ADFRDDYCHKREESYYHARIYTKYAQTFHSNPYTNQKTPNSDLYYPALNEGNSFSIQIMG 182
D+Y + +A+ FH T +T + + YP L + S + +G
Sbjct: 195 VKKMDEY-------------LSDFAKKFH---LTTNETESRN--YP-LEKATSHLLGYVG 235
Query: 183 ISVAELLKSKKF 194
+E LK K++
Sbjct: 236 PINSEELKQKEY 247
>pdb|1MWX|A Chain A, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution.
pdb|1MWX|B Chain B, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution
Length = 646
Score = 30.8 bits (68), Expect = 0.16
Identities = 34/132 (25%), Positives = 56/132 (41%), Gaps = 23/132 (17%)
Query: 67 KNGRYIASSETLYSNGLYPKTILAKMQDSSAKELICIASLRLEAMDRN----QGLSLLKT 122
+N +A++ T Y G+ PK + K + AKEL + MD+N LKT
Sbjct: 135 RNNVELANTGTAYEIGIVPKNVSKKDYKAIAKELSISEDYIKQQMDQNWVQDDTFVPLKT 194
Query: 123 ADFRDDYCHKREESYYHARIYTKYAQTFHSNPYTNQKTPNSDLYYPALNEGNSFSIQIMG 182
D+Y + +A+ FH T +T + + YP L + S + +G
Sbjct: 195 VKKMDEY-------------LSDFAKKFH---LTTNETESRN--YP-LEKATSHLLGYVG 235
Query: 183 ISVAELLKSKKF 194
+E LK K++
Sbjct: 236 PINSEELKQKEY 247
>pdb|1MWR|A Chain A, Structure Of Semet Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
(Trigonal Form) At 2.45 A Resolution.
pdb|1MWR|B Chain B, Structure Of Semet Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
(Trigonal Form) At 2.45 A Resolution
Length = 646
Score = 28.5 bits (62), Expect = 0.81
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 23/132 (17%)
Query: 67 KNGRYIASSETLYSNGLYPKTILAKMQDSSAKELICIASLRLEAMDRN----QGLSLLKT 122
+N +A++ T Y G+ PK + K + AKEL + D+N LKT
Sbjct: 135 RNNVELANTGTAYEIGIVPKNVSKKDYKAIAKELSISEDYIKQQXDQNWVQDDTFVPLKT 194
Query: 123 ADFRDDYCHKREESYYHARIYTKYAQTFHSNPYTNQKTPNSDLYYPALNEGNSFSIQIMG 182
D+Y + +A+ FH T +T + + YP L + S + +G
Sbjct: 195 VKKXDEY-------------LSDFAKKFH---LTTNETESRN--YP-LEKATSHLLGYVG 235
Query: 183 ISVAELLKSKKF 194
+E LK K++
Sbjct: 236 PINSEELKQKEY 247
>pdb|1CRM| Carbonic Anhydrase I (Carbonate Dehydratase I, Hca I)
(E.C.4.2.1.1) Complexed With Mercuric Chloride
Length = 260
Score = 27.7 bits (60), Expect = 1.4
Identities = 19/58 (32%), Positives = 27/58 (45%), Gaps = 2/58 (3%)
Query: 72 IASSETLYSNGLYPKTILAKMQDSSAKELICIASLRLEAMDRNQGLSLLKTADFRDDY 129
I +SET + L P I ++AKE+I + + NQ S+LK F D Y
Sbjct: 33 IKTSETKHDTSLKP--ISVSYNPATAKEIINVGHSFHVNFEDNQDRSVLKGGPFSDSY 88
>pdb|2CAB| Carbonic Anhydrase Form B (Carbonate Dehydratase) (E.C.4.2.1.1)
Length = 261
Score = 27.7 bits (60), Expect = 1.4
Identities = 19/58 (32%), Positives = 27/58 (45%), Gaps = 2/58 (3%)
Query: 72 IASSETLYSNGLYPKTILAKMQDSSAKELICIASLRLEAMDRNQGLSLLKTADFRDDY 129
I +SET + L P I ++AKE+I + + NQ S+LK F D Y
Sbjct: 34 IKTSETKHDTSLKP--ISVSYNPATAKEIINVGHSFHVNFEDNQDRSVLKGGPFSDSY 89
>pdb|1JV0|A Chain A, The Crystal Structure Of The Zinc(Ii) Adduct Of The Cai
Michigan 1 Variant
pdb|1J9W|A Chain A, Solution Structure Of The Cai Michigan 1 Variant
pdb|1JV0|B Chain B, The Crystal Structure Of The Zinc(Ii) Adduct Of The Cai
Michigan 1 Variant
pdb|1J9W|B Chain B, Solution Structure Of The Cai Michigan 1 Variant
Length = 260
Score = 26.6 bits (57), Expect = 3.1
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 72 IASSETLYSNGLYPKTILAKMQDSSAKELICIASLRLEAMDRNQGLSLLKTADFRDDY 129
I +SET + L P I ++AKE+I + + N S+LK F D Y
Sbjct: 33 IKTSETKHDTSLKP--ISVSYNPATAKEIINVGHSFRVNFEDNDNRSVLKGGPFSDSY 88
>pdb|1CZM| Drug-Protein Interactions: Structure Of Sulfonamide Drug Complexed
With Human Carbonic Anhydrase I
pdb|1BZM| Drug-Protein Interactions: Structure Of Sulfonamide Drug Complexed
With Human Carbonic Anhydrase I
pdb|1HCB| Carbonic Anhydrase I (E.C.4.2.1.1) Complexed With Bicarbonate
pdb|1HUH| Carbonic Anhydrase I (E.C.4.2.1.1) Complexed With Iodide Inhibitor
pdb|1AZM| Drug-Protein Interactions: Structure Of Sulfonamide Drug Complexed
With Human Carbonic Anhydrase I
pdb|1HUG| Carbonic Anhydrase I (E.C.4.2.1.1) Complexed With Gold Cyanide
Inhibitor
Length = 260
Score = 26.2 bits (56), Expect = 4.0
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 72 IASSETLYSNGLYPKTILAKMQDSSAKELICIASLRLEAMDRNQGLSLLKTADFRDDY 129
I +SET + L P I ++AKE+I + + N S+LK F D Y
Sbjct: 33 IKTSETKHDTSLKP--ISVSYNPATAKEIINVGHSFHVNFEDNDNRSVLKGGPFSDSY 88
>pdb|1NFD|A Chain A, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In Complex
With An Anti-Tcr Fab Fragment Derived From A Mitogenic
Antibody
pdb|1NFD|C Chain C, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In Complex
With An Anti-Tcr Fab Fragment Derived From A Mitogenic
Antibody
Length = 203
Score = 26.2 bits (56), Expect = 4.0
Identities = 15/45 (33%), Positives = 27/45 (59%), Gaps = 2/45 (4%)
Query: 132 KREESYYHARIYTKYAQTFHSNPYTNQKTPNSDLYYPALNEGNSF 176
+ E +HA ++ K + +FH + Q + +S LYY AL+EG ++
Sbjct: 56 RTEHQGFHATLH-KSSSSFHLQKSSAQLS-DSALYYCALSEGGNY 98
>pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1KEK|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|1B0P|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2PDA|A Chain A, Crystal Structure Of The Complex Between Pyruvate-
Ferredoxin Oxidoreductase From Desulfovibrio Africanus
And Pyruvate.
pdb|2PDA|B Chain B, Crystal Structure Of The Complex Between Pyruvate-
Ferredoxin Oxidoreductase From Desulfovibrio Africanus
And Pyruvate
Length = 1231
Score = 25.4 bits (54), Expect = 6.9
Identities = 23/90 (25%), Positives = 40/90 (43%), Gaps = 4/90 (4%)
Query: 153 NPYTNQKTPNSDLYYPALNEGNSFSIQIMGISVAELLKSKKFLSLDVSFKKGSVLWGGRP 212
+P+ N D+Y+ N + +++ GI VAE ++ L+ S+K + G P
Sbjct: 211 HPHVRGTAQNPDIYFQGREAANPYYLKVPGI-VAEYMQKVASLT-GRSYKLFDYV--GAP 266
Query: 213 YFSEVGEFMGMASSTLENQESLVIIPKEKI 242
V MG + T+E + + EKI
Sbjct: 267 DAERVIVSMGSSCETIEEVINHLAAKGEKI 296
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,483,975
Number of Sequences: 13198
Number of extensions: 58770
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 9
length of query: 259
length of database: 2,899,336
effective HSP length: 86
effective length of query: 173
effective length of database: 1,764,308
effective search space: 305225284
effective search space used: 305225284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)