BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646050|ref|NP_208232.1| peptidyl-prolyl cis-trans
isomerase B, cyclosporin-type rotamase (ppi) [Helicobacter pylori
26695]
(163 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans 92 2e-20
pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholin... 86 3e-18
pdb|1CLH| Cyclophilin (Nmr, 12 Structures) 82 3e-17
pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Th... 81 5e-17
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclop... 81 5e-17
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia >gi|2981732|... 81 5e-17
pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form ... 81 5e-17
pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Compl... 77 1e-15
pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Sy... 76 2e-15
pdb|2RMC|A Chain A, Cyclophilin C Complexed With Cyclospori... 76 2e-15
pdb|1DYW|A Chain A, Biochemical And Structural Characteriza... 76 2e-15
pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Doub... 74 6e-15
pdb|2NUL| Peptidylprolyl Isomerase From E. Coli 73 2e-14
pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-A... 70 9e-14
pdb|1A58| Cyclophilin From Brugia Malayi >gi|6730149|pdb|... 70 2e-13
pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 65 3e-12
pdb|1BS0|A Chain A, Plp-Dependent Acyl-Coa Synthase 28 0.40
pdb|1DJE|A Chain A, Crystal Structure Of The Plp-Bound Form... 28 0.40
pdb|1FJ2|A Chain A, Crystal Structure Of The Human Acyl Pro... 25 3.4
pdb|1MIO|C Chain C, Nitrogenase Molybdenum-Iron Protein 25 3.4
pdb|1MIO|A Chain A, Nitrogenase Molybdenum-Iron Protein 25 3.4
pdb|1GJH|A Chain A, Human Bcl-2, Isoform 2 24 9.8
pdb|1KIU|B Chain B, Fimh Adhesin Q133n Mutant-Fimc Chaperon... 24 9.8
pdb|1KLF|B Chain B, Fimh Adhesin-Fimc Chaperone Complex Wit... 24 9.8
pdb|1GKL|A Chain A, S954a Mutant Of The Feruloyl Esterase M... 24 9.8
pdb|1G5M|A Chain A, Human Bcl-2, Isoform 1 24 9.8
pdb|1EG1|A Chain A, Endoglucanase I From Trichoderma Reesei... 24 9.8
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 92.4 bits (228), Expect = 2e-20
Identities = 63/131 (48%), Positives = 76/131 (57%), Gaps = 12/131 (9%)
Query: 28 GNIALELFYKDAPQAVSNFVTLAK----EGFYNGLNFHRVIAGFVAQGGCPYGTGTGGPG 83
G I + LF K P+ +NF+ LAK EG Y G FHRVIA F+ QGG + G G G
Sbjct: 21 GRIVIGLFGKTVPKTATNFIELAKKPKGEG-YPGSKFHRVIADFMIQGG-DFTRGDGTGG 78
Query: 84 HRIKCEVAHNPN---KHK-RGSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSA 139
I E + N KH G +SMA+AG DT GSQFF+ V P LDG H VFGKI
Sbjct: 79 RSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKI--L 136
Query: 140 EGLSVLDKIKQ 150
EG+ V+ KI+Q
Sbjct: 137 EGMDVVRKIEQ 147
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 85.5 bits (210), Expect = 3e-18
Identities = 57/129 (44%), Positives = 73/129 (56%), Gaps = 10/129 (7%)
Query: 28 GNIALELFYKDAPQAVSNFVTLA--KEGF-YNGLNFHRVIAGFVAQGG-CPYGTGTGGP- 82
G + LF K P+ V NFV LA ++GF Y FHRVI F+ QGG G GTGG
Sbjct: 20 GRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKS 79
Query: 83 --GHRIKCEVAHNPNKHKRGSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSAE 140
G R E + G +SMA+AG+DT GSQFF+ V LDG+H VFGK+ E
Sbjct: 80 IYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKV--LE 136
Query: 141 GLSVLDKIK 149
G+ V+ K++
Sbjct: 137 GMEVVRKVE 145
>pdb|1CLH| Cyclophilin (Nmr, 12 Structures)
Length = 166
Score = 82.0 bits (201), Expect = 3e-17
Identities = 57/138 (41%), Positives = 75/138 (54%), Gaps = 10/138 (7%)
Query: 20 YATIKTNKGNIALELFYKDAPQAVSNFVTLAKEGFYNGLNFHRVIAGFVAQ-GGCPYGTG 78
+ + T+ GNI LEL + AP +V NFV GFYN FHRVI GF+ Q GG
Sbjct: 6 HVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQ 65
Query: 79 TGGPGHRIKCEVAHNPNKHKRGSISMAH-AGRDTGGSQFFL-----CFVDLPHLDGEHTV 132
P IK E A N ++ RG+I+MA A +D+ SQFF+ F+D D + V
Sbjct: 66 QKKPNPPIKNE-ADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAV 124
Query: 133 FGKITSAEGLSVLDKIKQ 150
FGK+ +G+ V DKI Q
Sbjct: 125 FGKV--VKGMDVADKISQ 140
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
pdb|3CYS|A Chain A, Cyclophilin A Complexed With Cyclosporin A (Nmr, 22
Structures)
Length = 165
Score = 81.3 bits (199), Expect = 5e-17
Identities = 52/129 (40%), Positives = 76/129 (58%), Gaps = 8/129 (6%)
Query: 28 GNIALELFYKDAPQAVSNFVTLA--KEGF-YNGLNFHRVIAGFVAQGG-CPYGTGTGGPG 83
G ++ ELF P+ NF L+ ++GF Y G FHR+I GF+ QGG GTGG
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 77
Query: 84 -HRIKCEVAHNPNKHKR-GSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSAEG 141
+ K E + KH G +SMA+AG +T GSQFF+C LDG+H VFGK+ EG
Sbjct: 78 IYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV--KEG 135
Query: 142 LSVLDKIKQ 150
+++++ +++
Sbjct: 136 MNIVEAMER 144
>pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1MIK|A Chain A, Mol_id: 1; Molecule: Cyclophilin A; Chain: A; Engineered:
Yes; Mol_id: 2; Molecule:
[(5-Hydroxy)norvaline2]-Cyclosporin; Chain: B;
Engineered: Yes
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2-S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1CWC|A Chain A, Mol_id: 1; Molecule: Cyclophilin A; Chain: A; Engineered:
Yes; Mol_id: 2; Molecule:
[4,N-Dimethylnorleucine]4-Cyclosporin; Chain: C;
Engineered: Yes
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|2RMA|A Chain A, Cyclophilin A (E.C.5.2.1.8) Complexed With Cyclosporin A
pdb|2RMA|C Chain C, Cyclophilin A (E.C.5.2.1.8) Complexed With Cyclosporin A
pdb|2RMA|E Chain E, Cyclophilin A (E.C.5.2.1.8) Complexed With Cyclosporin A
pdb|2RMA|G Chain G, Cyclophilin A (E.C.5.2.1.8) Complexed With Cyclosporin A
pdb|2RMA|I Chain I, Cyclophilin A (E.C.5.2.1.8) Complexed With Cyclosporin A
pdb|2RMA|K Chain K, Cyclophilin A (E.C.5.2.1.8) Complexed With Cyclosporin A
pdb|2RMA|M Chain M, Cyclophilin A (E.C.5.2.1.8) Complexed With Cyclosporin A
pdb|2RMA|O Chain O, Cyclophilin A (E.C.5.2.1.8) Complexed With Cyclosporin A
pdb|2RMA|Q Chain Q, Cyclophilin A (E.C.5.2.1.8) Complexed With Cyclosporin A
pdb|2RMA|S Chain S, Cyclophilin A (E.C.5.2.1.8) Complexed With Cyclosporin A
pdb|2RMB|A Chain A, Cyclophilin A (E.C.5.2.1.8) Complexed With
Dimethyl-Cyclosporin A
pdb|2RMB|C Chain C, Cyclophilin A (E.C.5.2.1.8) Complexed With
Dimethyl-Cyclosporin A
pdb|2RMB|E Chain E, Cyclophilin A (E.C.5.2.1.8) Complexed With
Dimethyl-Cyclosporin A
pdb|2RMB|G Chain G, Cyclophilin A (E.C.5.2.1.8) Complexed With
Dimethyl-Cyclosporin A
pdb|2RMB|I Chain I, Cyclophilin A (E.C.5.2.1.8) Complexed With
Dimethyl-Cyclosporin A
pdb|2RMB|K Chain K, Cyclophilin A (E.C.5.2.1.8) Complexed With
Dimethyl-Cyclosporin A
pdb|2RMB|M Chain M, Cyclophilin A (E.C.5.2.1.8) Complexed With
Dimethyl-Cyclosporin A
pdb|2RMB|O Chain O, Cyclophilin A (E.C.5.2.1.8) Complexed With
Dimethyl-Cyclosporin A
pdb|2RMB|Q Chain Q, Cyclophilin A (E.C.5.2.1.8) Complexed With
Dimethyl-Cyclosporin A
pdb|2RMB|S Chain S, Cyclophilin A (E.C.5.2.1.8) Complexed With
Dimethyl-Cyclosporin A
pdb|1CWA|A Chain A, Mol_id: 1; Molecule: Cyclophilin A; Chain: A; Engineered:
Yes; Mol_id: 2; Molecule: Cyclosporin A; Chain: C;
Engineered: Yes
pdb|1CWB|A Chain A, Mol_id: 1; Molecule: Cyclophilin A; Chain: A; Engineered:
Yes; Mol_id: 2; Molecule:
[4-[(E)-2-Butenyl]-4,4,N-Trimethyl-L-Threonine]1-
Cyclosporin; Chain: C; Engineered: Yes
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1OCA| Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL| Cyclophilin A
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
Length = 165
Score = 81.3 bits (199), Expect = 5e-17
Identities = 52/129 (40%), Positives = 76/129 (58%), Gaps = 8/129 (6%)
Query: 28 GNIALELFYKDAPQAVSNFVTLA--KEGF-YNGLNFHRVIAGFVAQGG-CPYGTGTGGPG 83
G ++ ELF P+ NF L+ ++GF Y G FHR+I GF+ QGG GTGG
Sbjct: 18 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 77
Query: 84 -HRIKCEVAHNPNKHKR-GSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSAEG 141
+ K E + KH G +SMA+AG +T GSQFF+C LDG+H VFGK+ EG
Sbjct: 78 IYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV--KEG 135
Query: 142 LSVLDKIKQ 150
+++++ +++
Sbjct: 136 MNIVEAMER 144
>pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
Length = 164
Score = 81.3 bits (199), Expect = 5e-17
Identities = 52/129 (40%), Positives = 76/129 (58%), Gaps = 8/129 (6%)
Query: 28 GNIALELFYKDAPQAVSNFVTLA--KEGF-YNGLNFHRVIAGFVAQGG-CPYGTGTGGPG 83
G ++ ELF P+ NF L+ ++GF Y G FHR+I GF+ QGG GTGG
Sbjct: 17 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKS 76
Query: 84 -HRIKCEVAHNPNKHKR-GSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSAEG 141
+ K E + KH G +SMA+AG +T GSQFF+C LDG+H VFGK+ EG
Sbjct: 77 IYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV--KEG 134
Query: 142 LSVLDKIKQ 150
+++++ +++
Sbjct: 135 MNIVEAMER 143
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 81.3 bits (199), Expect = 5e-17
Identities = 51/138 (36%), Positives = 70/138 (49%), Gaps = 17/138 (12%)
Query: 28 GNIALELFYKDAPQAVSNF-----------VTLAKEGFYNGLNFHRVIAGFVAQGGCPYG 76
G I LELF P+ NF T K + G FHR+I F+ QGG +
Sbjct: 30 GRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGG-DFS 88
Query: 77 TGTGGPGHRIKCEVAHNPNKH----KRGSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTV 132
G G I E + N H K G +SMA+AG +T GSQFF+ V PHLDG+H V
Sbjct: 89 NQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVV 148
Query: 133 FGKITSAEGLS-VLDKIK 149
FG++ G++ +L+ ++
Sbjct: 149 FGQVIKGMGVAKILENVE 166
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 76.6 bits (187), Expect = 1e-15
Identities = 57/153 (37%), Positives = 77/153 (50%), Gaps = 19/153 (12%)
Query: 25 TNKGNIALELFYKDAPQAVSNFVTLA---------KEGFYNGLNFHRVIAGFVAQGG-CP 74
+N G I ELF P+ NF L K Y FHR+I F+ QGG
Sbjct: 15 SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDIT 74
Query: 75 YGTGTGGPGHRIKCEVAHNPN-KHKR-GSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTV 132
G G+GG + N N KH + G +SMA+AG +T SQFF+ V P LDG+H V
Sbjct: 75 NGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVV 134
Query: 133 FGKITSAEGLSVLDKI-----KQGDIIESVVFS 160
FGK+ EG++V+ ++ K G + SVV +
Sbjct: 135 FGKV--IEGMNVVREMEKEGAKSGYVKRSVVIT 165
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 76.3 bits (186), Expect = 2e-15
Identities = 51/125 (40%), Positives = 70/125 (55%), Gaps = 8/125 (6%)
Query: 28 GNIALELFYKDAPQAVSNFVTLA--KEGF-YNGLNFHRVIAGFVAQGG-CPYGTGTGGPG 83
G ++ ELF P+ NF L+ ++GF Y G FHR+I GF QGG GTGG
Sbjct: 17 GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFXCQGGDFTRHNGTGGKS 76
Query: 84 -HRIKCEVAHNPNKHKR-GSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSAEG 141
+ K E + KH G +S A+AG +T GSQFF+C LDG+H VFGK+ EG
Sbjct: 77 IYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFICTAKTEWLDGKHVVFGKV--KEG 134
Query: 142 LSVLD 146
++++
Sbjct: 135 XNIVE 139
>pdb|2RMC|A Chain A, Cyclophilin C Complexed With Cyclosporin A
pdb|2RMC|C Chain C, Cyclophilin C Complexed With Cyclosporin A
pdb|2RMC|E Chain E, Cyclophilin C Complexed With Cyclosporin A
pdb|2RMC|G Chain G, Cyclophilin C Complexed With Cyclosporin A
Length = 182
Score = 76.3 bits (186), Expect = 2e-15
Identities = 54/129 (41%), Positives = 72/129 (54%), Gaps = 10/129 (7%)
Query: 28 GNIALELFYKDAPQAVSNFVTLA--KEGF-YNGLNFHRVIAGFVAQGGCPYGTGTGGPGH 84
G I + LF P+ V NFV LA ++G+ Y G FHRVI F+ QGG + G G
Sbjct: 22 GRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGG-DFTARDGTGGM 80
Query: 85 RIKCEVAHNPN---KHKR-GSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSAE 140
I E + N KH G +SMA+AG DT GSQFF+ LDG+H VFGK+ +
Sbjct: 81 SIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKV--LD 138
Query: 141 GLSVLDKIK 149
G++V+ I+
Sbjct: 139 GMTVVHSIE 147
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
Length = 173
Score = 76.3 bits (186), Expect = 2e-15
Identities = 52/135 (38%), Positives = 69/135 (50%), Gaps = 15/135 (11%)
Query: 28 GNIALELFYKDAPQAVSNFVTLA----------KEGFYNGLNFHRVIAGFVAQGG-CPYG 76
G I +EL+ P+ NF L K + G FHR+I F+ QGG G
Sbjct: 18 GRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRG 77
Query: 77 TGTGGPG-HRIKCEVAHNPNKHKR-GSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFG 134
GTGG + K + KH G +SMA+AG +T GSQFFLC V LDG+H VFG
Sbjct: 78 NGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFG 137
Query: 135 KITSAEGLSVLDKIK 149
++ EGL V+ ++
Sbjct: 138 RV--VEGLDVVKAVE 150
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 74.3 bits (181), Expect = 6e-15
Identities = 56/153 (36%), Positives = 76/153 (49%), Gaps = 19/153 (12%)
Query: 25 TNKGNIALELFYKDAPQAVSNFVTLA---------KEGFYNGLNFHRVIAGFVAQGG-CP 74
+N G I ELF P+ NF L K Y FHR+I F+ QGG
Sbjct: 15 SNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDIT 74
Query: 75 YGTGTGGPGHRIKCEVAHNPN-KHKR-GSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTV 132
G G+GG + N N KH + G +SMA+AG +T SQF + V P LDG+H V
Sbjct: 75 NGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLVPCPWLDGKHVV 134
Query: 133 FGKITSAEGLSVLDKI-----KQGDIIESVVFS 160
FGK+ EG++V+ ++ K G + SVV +
Sbjct: 135 FGKV--IEGMNVVREMEKEGAKSGYVKRSVVIT 165
>pdb|2NUL| Peptidylprolyl Isomerase From E. Coli
Length = 164
Score = 72.8 bits (177), Expect = 2e-14
Identities = 53/138 (38%), Positives = 75/138 (53%), Gaps = 13/138 (9%)
Query: 22 TIKTNKGNIALELFYKDAPQAVSNFVTLAKEGFYNGLNFHRVIAGFVAQ-GGCPYGTGTG 80
T TN G+I ++ F AP+ V NF+ +EGFYN FHRVI GF+ Q GG G
Sbjct: 3 TFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQK 62
Query: 81 GPGHRIKCEVAHNPNKHKRGSISMAHA-GRDTGGSQFFLCFVDLPHLD--GE------HT 131
IK E A+N K+ RG+++MA + +QFF+ VD L+ GE +
Sbjct: 63 ATKEPIKNE-ANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYC 121
Query: 132 VFGKITSAEGLSVLDKIK 149
VF ++ +G+ V+DKIK
Sbjct: 122 VFAEV--VDGMDVVDKIK 137
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 70.5 bits (171), Expect = 9e-14
Identities = 52/138 (37%), Positives = 74/138 (52%), Gaps = 13/138 (9%)
Query: 22 TIKTNKGNIALELFYKDAPQAVSNFVTLAKEGFYNGLNFHRVIAGFVAQ-GGCPYGTGTG 80
T TN G+I ++ F AP+ V NF+ +EGFYN FHRVI GF+ Q GG G
Sbjct: 3 TFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQK 62
Query: 81 GPGHRIKCEVAHNPNKHKRGSISMAHA-GRDTGGSQFFLCFVDLPHLD--GE------HT 131
IK E A+N K+ RG+++MA + +QFF+ VD L+ GE +
Sbjct: 63 ATKEPIKNE-ANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYC 121
Query: 132 VFGKITSAEGLSVLDKIK 149
VF ++ +G+ +DKIK
Sbjct: 122 VFAEV--VDGMDEVDKIK 137
>pdb|1A58| Cyclophilin From Brugia Malayi
pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33| Peptidylprolyl Isomerase, Cyclophilin-Like Domain From Brugia
Malayi
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
Length = 177
Score = 69.7 bits (169), Expect = 2e-13
Identities = 51/136 (37%), Positives = 67/136 (48%), Gaps = 16/136 (11%)
Query: 28 GNIALELFYKDAPQAVSNFVTLA-----------KEGFYNGLNFHRVIAGFVAQGG-CPY 75
G I +EL+ AP+ +NF+ L K Y G FHRVI F+ QGG
Sbjct: 21 GRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTK 80
Query: 76 GTGTGGPG-HRIKCEVAHNPNKHKRGSI-SMAHAGRDTGGSQFFLCFVDLPHLDGEHTVF 133
G GTGG + + KH + SMA+ G +T GSQFF+ PHL+ H VF
Sbjct: 81 GDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVF 140
Query: 134 GKITSAEGLSVLDKIK 149
GK+ S G V+ KI+
Sbjct: 141 GKVVS--GQEVVTKIE 154
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
Length = 177
Score = 65.5 bits (158), Expect = 3e-12
Identities = 50/137 (36%), Positives = 65/137 (46%), Gaps = 21/137 (15%)
Query: 28 GNIALELFYKDAPQAVSNFVTLAKEGF--------YNGLNFHRVIAGFVAQGG-CPYGTG 78
G + +ELF P+ NF F Y G FHRVI F+ QGG G G
Sbjct: 25 GRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDG 84
Query: 79 TG------GPGHRIKCEVAHNPNKHKRGSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTV 132
TG GP ++ H+ G +SMA++G T G QFF+ LDG+H V
Sbjct: 85 TGVASIYRGPFADENFKLRHSAP----GLLSMANSGPSTNGCQFFITCSKCDWLDGKHVV 140
Query: 133 FGKITSAEGLSVLDKIK 149
FGKI +GL V+ KI+
Sbjct: 141 FGKI--IDGLLVMRKIE 155
>pdb|1BS0|A Chain A, Plp-Dependent Acyl-Coa Synthase
Length = 384
Score = 28.5 bits (62), Expect = 0.40
Identities = 15/38 (39%), Positives = 18/38 (46%)
Query: 55 YNGLNFHRVIAGFVAQGGCPYGTGTGGPGHRIKCEVAH 92
Y GL+ H I QG +G G+GG GH V H
Sbjct: 49 YLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVH 86
>pdb|1DJE|A Chain A, Crystal Structure Of The Plp-Bound Form Of 8-Amino-7-
Oxonanoate Synthase
pdb|1DJ9|A Chain A, Crystal Structure Of 8-Amino-7-Oxonanoate Synthase (Or
7- Keto-8aminipelargonate Or Kapa Synthase) Complexed
With Plp And The Product 8(S)-Amino-7-Oxonanonoate (Or
Kapa). The Enzyme Of Biotin Biosynthetic Pathway
Length = 384
Score = 28.5 bits (62), Expect = 0.40
Identities = 15/38 (39%), Positives = 18/38 (46%)
Query: 55 YNGLNFHRVIAGFVAQGGCPYGTGTGGPGHRIKCEVAH 92
Y GL+ H I QG +G G+GG GH V H
Sbjct: 49 YLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVH 86
>pdb|1FJ2|A Chain A, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
pdb|1FJ2|B Chain B, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
Length = 232
Score = 25.4 bits (54), Expect = 3.4
Identities = 12/32 (37%), Positives = 17/32 (52%)
Query: 41 QAVSNFVTLAKEGFYNGLNFHRVIAGFVAQGG 72
QA N L + NG+ +R+I G +QGG
Sbjct: 93 QAAENIKALIDQEVKNGIPSNRIILGGFSQGG 124
>pdb|1MIO|C Chain C, Nitrogenase Molybdenum-Iron Protein
Length = 533
Score = 25.4 bits (54), Expect = 3.4
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 17/87 (19%)
Query: 10 IKEEELAKTAYATIKTNKGNIALELFYKDAPQAVSNFVTLAKEGFYNGLNFHRVIAGFVA 69
+K+E L K T KT G+I ++ P+ V+N R + G +
Sbjct: 4 LKDEILEKYIPKTKKTRSGHIVIKTEETPNPEIVAN---------------TRTVPGIIT 48
Query: 70 QGGCPYGTGTGGPGHRIK--CEVAHNP 94
GC Y G IK + H P
Sbjct: 49 ARGCAYAGCKGVVMGPIKDMVHITHGP 75
>pdb|1MIO|A Chain A, Nitrogenase Molybdenum-Iron Protein
Length = 525
Score = 25.4 bits (54), Expect = 3.4
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 17/87 (19%)
Query: 10 IKEEELAKTAYATIKTNKGNIALELFYKDAPQAVSNFVTLAKEGFYNGLNFHRVIAGFVA 69
+K+E L K T KT G+I ++ P+ V+N R + G +
Sbjct: 4 LKDEILEKYIPKTKKTRSGHIVIKTEETPNPEIVAN---------------TRTVPGIIT 48
Query: 70 QGGCPYGTGTGGPGHRIK--CEVAHNP 94
GC Y G IK + H P
Sbjct: 49 ARGCAYAGCKGVVMGPIKDMVHITHGP 75
>pdb|1GJH|A Chain A, Human Bcl-2, Isoform 2
Length = 166
Score = 23.9 bits (50), Expect = 9.8
Identities = 10/26 (38%), Positives = 17/26 (64%)
Query: 42 AVSNFVTLAKEGFYNGLNFHRVIAGF 67
A F T+ +E F +G+N+ R++A F
Sbjct: 85 ARGRFATVVEELFRDGVNWGRIVAFF 110
>pdb|1KIU|B Chain B, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|D Chain D, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|F Chain F, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|H Chain H, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|J Chain J, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|L Chain L, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|N Chain N, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
pdb|1KIU|P Chain P, Fimh Adhesin Q133n Mutant-Fimc Chaperone Complex With
Methyl-Alpha-D-Mannose
Length = 279
Score = 23.9 bits (50), Expect = 9.8
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 29 NIALELF-YKDAPQAVSNFVTLAKEGFYNGL--NFHRVIAGFVAQGGCPY 75
+++ ++F + D P+ ++++VTL + Y G+ NF +G V G Y
Sbjct: 37 DLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNF----SGTVKYSGSSY 82
>pdb|1KLF|B Chain B, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|D Chain D, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|F Chain F, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|H Chain H, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|J Chain J, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|L Chain L, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|N Chain N, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1KLF|P Chain P, Fimh Adhesin-Fimc Chaperone Complex With D-Mannose
pdb|1QUN|B Chain B, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin
Complex From Uropathogenic E.Coli
pdb|1QUN|D Chain D, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin
Complex From Uropathogenic E.Coli
pdb|1QUN|F Chain F, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin
Complex From Uropathogenic E.Coli
pdb|1QUN|H Chain H, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin
Complex From Uropathogenic E.Coli
pdb|1QUN|J Chain J, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin
Complex From Uropathogenic E.Coli
pdb|1QUN|L Chain L, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin
Complex From Uropathogenic E.Coli
pdb|1QUN|N Chain N, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin
Complex From Uropathogenic E.Coli
pdb|1QUN|P Chain P, X-Ray Structure Of The Fimc-Fimh Chaperone Adhesin
Complex From Uropathogenic E.Coli
Length = 279
Score = 23.9 bits (50), Expect = 9.8
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 29 NIALELF-YKDAPQAVSNFVTLAKEGFYNGL--NFHRVIAGFVAQGGCPY 75
+++ ++F + D P+ ++++VTL + Y G+ NF +G V G Y
Sbjct: 37 DLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNF----SGTVKYSGSSY 82
>pdb|1GKL|A Chain A, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Ferulic Acid
pdb|1GKL|B Chain B, S954a Mutant Of The Feruloyl Esterase Module From
Clostridium Thermocellum Complexed With Ferulic Acid
Length = 297
Score = 23.9 bits (50), Expect = 9.8
Identities = 24/76 (31%), Positives = 30/76 (38%), Gaps = 9/76 (11%)
Query: 5 IKTYEIKEEELAKTAYATIKTNKGNIALELFYKDAPQAVSNFV-----TLAKEGFYNGL- 58
I + I EL T N GN + FY++ Q V FV T A+ G+
Sbjct: 95 ILDHAIMNGELEPLIVVTPTFNGGNCTAQNFYQEFRQNVIPFVESKYSTYAESTTPQGIA 154
Query: 59 --NFHRVIAGFVAQGG 72
HR GF A GG
Sbjct: 155 ASRMHRGFGGF-AMGG 169
>pdb|1G5M|A Chain A, Human Bcl-2, Isoform 1
Length = 166
Score = 23.9 bits (50), Expect = 9.8
Identities = 10/26 (38%), Positives = 17/26 (64%)
Query: 42 AVSNFVTLAKEGFYNGLNFHRVIAGF 67
A F T+ +E F +G+N+ R++A F
Sbjct: 85 ARGRFATVVEELFRDGVNWGRIVAFF 110
>pdb|1EG1|A Chain A, Endoglucanase I From Trichoderma Reesei
pdb|1EG1|C Chain C, Endoglucanase I From Trichoderma Reesei
Length = 371
Score = 23.9 bits (50), Expect = 9.8
Identities = 14/60 (23%), Positives = 24/60 (39%)
Query: 22 TIKTNKGNIALELFYKDAPQAVSNFVTLAKEGFYNGLNFHRVIAGFVAQGGCPYGTGTGG 81
T+ T+K + F D N V++ ++ NG++ G CP + GG
Sbjct: 242 TVDTSKTFTIITQFNTDNGSPSGNLVSITRKYQQNGVDIPSAQPGGDTISSCPSASAYGG 301
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,066,664
Number of Sequences: 13198
Number of extensions: 48275
Number of successful extensions: 162
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 118
Number of HSP's gapped (non-prelim): 27
length of query: 163
length of database: 2,899,336
effective HSP length: 81
effective length of query: 82
effective length of database: 1,830,298
effective search space: 150084436
effective search space used: 150084436
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)