BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646051|ref|NP_208233.1| carbon storage regulator
(csrA) [Helicobacter pylori 26695]
(76 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phos... 26 0.70
pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue ... 26 0.70
pdb|1L7N|A Chain A, Transition State Analogue Of Phosphoser... 25 1.6
pdb|1L7O|A Chain A, Crystal Structure Of Phosphoserine Phos... 25 1.6
pdb|1BUA|A Chain A, EcorvGACITCCA2+ >gi|3660122|pdb|1BSU|A ... 24 3.5
pdb|1B96|A Chain A, Analysis Of A Mutational Hot-Spot In Th... 24 3.5
pdb|1B94|A Chain A, Restriction Endonuclease Ecorv With Cal... 24 3.5
pdb|1BSS|A Chain A, Ecorv-T93aDNACA2+ >gi|3660119|pdb|1BSS|... 24 3.5
pdb|1B97|A Chain A, Restriction Endonuclease Ecorv Mutant Q... 24 3.5
pdb|1RVE|A Chain A, Eco Rv Endonuclease (E.C.3.1.21.4) >gi|... 24 3.5
pdb|1D2F|B Chain B, X-Ray Structure Of Maly From Escherichi... 23 5.9
pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein... 23 7.7
pdb|1KSJ|B Chain B, Complex Of Arl2 And Pde Delta, Crystal ... 23 7.7
pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotran... 23 7.7
pdb|1WIO|A Chain A, Structure Of T-Cell Surface Glycoprotei... 23 7.7
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
Length = 211
Score = 26.2 bits (56), Expect = 0.70
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 10 EGIVIDDNIHIKVISIDRGSVRLGFEAPESTLILRAELKEAIVSE---NQKASVCVDESL 66
+G +++ I+ I+++ +V +G A + ++ +A LK A ++ +KA +C+++
Sbjct: 144 KGEILEKIAKIEGINLE-DTVAVGDGANDISMFKKAGLKIAFCAKPILKEKADICIEKRD 202
Query: 67 LENIKKVIK 75
L I K IK
Sbjct: 203 LREILKYIK 211
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
Length = 211
Score = 26.2 bits (56), Expect = 0.70
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 10 EGIVIDDNIHIKVISIDRGSVRLGFEAPESTLILRAELKEAIVSE---NQKASVCVDESL 66
+G +++ I+ I+++ +V +G A + ++ +A LK A ++ +KA +C+++
Sbjct: 144 KGEILEKIAKIEGINLE-DTVAVGDGANDISMFKKAGLKIAFCAKPILKEKADICIEKRD 202
Query: 67 LENIKKVIK 75
L I K IK
Sbjct: 203 LREILKYIK 211
>pdb|1L7N|A Chain A, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
pdb|1L7N|B Chain B, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
pdb|1L7M|B Chain B, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7M|A Chain A, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
Length = 211
Score = 25.0 bits (53), Expect = 1.6
Identities = 18/69 (26%), Positives = 38/69 (54%), Gaps = 4/69 (5%)
Query: 10 EGIVIDDNIHIKVISIDRGSVRLGFEAPESTLILRAELKEAIVSE---NQKASVCVDESL 66
+G +++ I+ I+++ +V +G A + + +A LK A ++ +KA +C+++
Sbjct: 144 KGEILEKIAKIEGINLE-DTVAVGDGANDISXFKKAGLKIAFCAKPILKEKADICIEKRD 202
Query: 67 LENIKKVIK 75
L I K IK
Sbjct: 203 LREILKYIK 211
>pdb|1L7O|A Chain A, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7O|B Chain B, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7P|A Chain A, Substrate Bound Phosphoserine Phosphatase Complex
Structure
pdb|1L7P|B Chain B, Substrate Bound Phosphoserine Phosphatase Complex
Structure
Length = 211
Score = 25.0 bits (53), Expect = 1.6
Identities = 18/69 (26%), Positives = 38/69 (54%), Gaps = 4/69 (5%)
Query: 10 EGIVIDDNIHIKVISIDRGSVRLGFEAPESTLILRAELKEAIVSE---NQKASVCVDESL 66
+G +++ I+ I+++ +V +G A + + +A LK A ++ +KA +C+++
Sbjct: 144 KGEILEKIAKIEGINLE-DTVAVGDGANDISXFKKAGLKIAFCAKPILKEKADICIEKRD 202
Query: 67 LENIKKVIK 75
L I K IK
Sbjct: 203 LREILKYIK 211
>pdb|1BUA|A Chain A, EcorvGACITCCA2+
pdb|1BSU|A Chain A, EcorvGAMITCCA2+
pdb|1BSU|B Chain B, EcorvGAMITCCA2+
Length = 243
Score = 23.9 bits (50), Expect = 3.5
Identities = 10/19 (52%), Positives = 13/19 (67%)
Query: 43 LRAELKEAIVSENQKASVC 61
LR++L A+ ENQK VC
Sbjct: 2 LRSDLINALYDENQKYDVC 20
>pdb|1B96|A Chain A, Analysis Of A Mutational Hot-Spot In The Ecorv
Restriction Endonuclease: A Catalytic Role For A Main
Chain Carbonyl Group
pdb|1B96|B Chain B, Analysis Of A Mutational Hot-Spot In The Ecorv
Restriction Endonuclease: A Catalytic Role For A Main
Chain Carbonyl Group
Length = 244
Score = 23.9 bits (50), Expect = 3.5
Identities = 10/19 (52%), Positives = 13/19 (67%)
Query: 43 LRAELKEAIVSENQKASVC 61
LR++L A+ ENQK VC
Sbjct: 2 LRSDLINALYDENQKYDVC 20
>pdb|1B94|A Chain A, Restriction Endonuclease Ecorv With Calcium
pdb|1B94|B Chain B, Restriction Endonuclease Ecorv With Calcium
pdb|1RVA|A Chain A, Eco Rv Endonuclease (E.C.3.1.21.4) Complexed With
Substrate Dna
pdb|1RVA|B Chain B, Eco Rv Endonuclease (E.C.3.1.21.4) Complexed With
Substrate Dna
pdb|1B95|A Chain A, Analysis Of A Mutational Hot-Spot In The Ecorv
Restriction Endonuclease: A Catalytic Role For A Main
Chain Carbonyl Group
pdb|1B95|B Chain B, Analysis Of A Mutational Hot-Spot In The Ecorv
Restriction Endonuclease: A Catalytic Role For A Main
Chain Carbonyl Group
pdb|1RVC|A Chain A, Eco Rv Endonuclease (E.C.3.1.21.4) Complexed With
Product Dna And Magnesium
pdb|1RVC|B Chain B, Eco Rv Endonuclease (E.C.3.1.21.4) Complexed With
Product Dna And Magnesium
pdb|1RVB|A Chain A, Eco Rv Endonuclease (E.C.3.1.21.4) Complexed With
Substrate Dna And Magnesium
pdb|1RVB|B Chain B, Eco Rv Endonuclease (E.C.3.1.21.4) Complexed With
Substrate Dna And Magnesium
pdb|4RVE|A Chain A, Eco Rv Endonuclease Complex With Dna
pdb|4RVE|B Chain B, Eco Rv Endonuclease Complex With Dna
pdb|4RVE|C Chain C, Eco Rv Endonuclease Complex With Dna
pdb|1RV5|A Chain A, Complex Of Ecorv Endonuclease With D(Aaagat)D(ATCTT)
pdb|1RV5|B Chain B, Complex Of Ecorv Endonuclease With D(Aaagat)D(ATCTT)
pdb|2RVE|A Chain A, Eco Rv Endonuclease Complex With Dna
pdb|2RVE|B Chain B, Eco Rv Endonuclease Complex With Dna
pdb|1AZ0|A Chain A, EcorvDNACA2+
pdb|1BGB|A Chain A, Ecorv Endonuclease Complex With 5'-Cgggatatccc Dna
pdb|1AZ0|B Chain B, EcorvDNACA2+
pdb|1BGB|B Chain B, Ecorv Endonuclease Complex With 5'-Cgggatatccc Dna
pdb|1AZ3|B Chain B, Ecorv Endonuclease, Unliganded, Form B
pdb|1AZ3|A Chain A, Ecorv Endonuclease, Unliganded, Form B
Length = 244
Score = 23.9 bits (50), Expect = 3.5
Identities = 10/19 (52%), Positives = 13/19 (67%)
Query: 43 LRAELKEAIVSENQKASVC 61
LR++L A+ ENQK VC
Sbjct: 2 LRSDLINALYDENQKYDVC 20
>pdb|1BSS|A Chain A, Ecorv-T93aDNACA2+
pdb|1BSS|B Chain B, Ecorv-T93aDNACA2+
pdb|1AZ4|B Chain B, Ecorv Endonuclease, Unliganded, Form B, T93a Mutant
pdb|1AZ4|A Chain A, Ecorv Endonuclease, Unliganded, Form B, T93a Mutant
Length = 244
Score = 23.9 bits (50), Expect = 3.5
Identities = 10/19 (52%), Positives = 13/19 (67%)
Query: 43 LRAELKEAIVSENQKASVC 61
LR++L A+ ENQK VC
Sbjct: 2 LRSDLINALYDENQKYDVC 20
>pdb|1B97|A Chain A, Restriction Endonuclease Ecorv Mutant Q69l
pdb|1B97|B Chain B, Restriction Endonuclease Ecorv Mutant Q69l
Length = 244
Score = 23.9 bits (50), Expect = 3.5
Identities = 10/19 (52%), Positives = 13/19 (67%)
Query: 43 LRAELKEAIVSENQKASVC 61
LR++L A+ ENQK VC
Sbjct: 2 LRSDLINALYDENQKYDVC 20
>pdb|1RVE|A Chain A, Eco Rv Endonuclease (E.C.3.1.21.4)
pdb|1RVE|B Chain B, Eco Rv Endonuclease (E.C.3.1.21.4)
pdb|1EOP|B Chain B, Ecorv Bound To Cognate Dna
pdb|1EOP|A Chain A, Ecorv Bound To Cognate Dna
pdb|1EOO|A Chain A, Ecorv Bound To Cognate Dna
pdb|1EOO|B Chain B, Ecorv Bound To Cognate Dna
pdb|1EO3|A Chain A, Inhibition Of Ecorv Endonuclease By Deoxyribo-3'-S-
Phosphorothiolates: A High Resolution X-Ray
Crystallographic Study
pdb|1EO3|B Chain B, Inhibition Of Ecorv Endonuclease By Deoxyribo-3'-S-
Phosphorothiolates: A High Resolution X-Ray
Crystallographic Study
pdb|1EO4|B Chain B, Ecorv Bound To Mn2+ And Cognate Dna Containing A 3's
Substition At The Cleavage Site
pdb|1EON|B Chain B, Ecorv Bound To 3'-S-Phosphorothiolate Dna And Ca2+
pdb|1EO4|A Chain A, Ecorv Bound To Mn2+ And Cognate Dna Containing A 3's
Substition At The Cleavage Site
pdb|1EON|A Chain A, Ecorv Bound To 3'-S-Phosphorothiolate Dna And Ca2+
Length = 245
Score = 23.9 bits (50), Expect = 3.5
Identities = 10/19 (52%), Positives = 13/19 (67%)
Query: 43 LRAELKEAIVSENQKASVC 61
LR++L A+ ENQK VC
Sbjct: 3 LRSDLINALYDENQKYDVC 21
>pdb|1D2F|B Chain B, X-Ray Structure Of Maly From Escherichia Coli: A
Pyridoxal- 5'-Phosphate-Dependent Enzyme Acting As A
Modulator In Mal Gene Expression
pdb|1D2F|A Chain A, X-Ray Structure Of Maly From Escherichia Coli: A
Pyridoxal- 5'-Phosphate-Dependent Enzyme Acting As A
Modulator In Mal Gene Expression
Length = 390
Score = 23.1 bits (48), Expect = 5.9
Identities = 14/65 (21%), Positives = 30/65 (45%), Gaps = 5/65 (7%)
Query: 12 IVIDDNIHIKVISIDRGSVRLGFEAPESTLILRAELKEAIVSENQKASVCVDESLLENIK 71
I + DN+ ++ L ++ P+ST + +L+ + +N + ++L+E K
Sbjct: 293 IYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNIDDN-----ALQKALIEQEK 347
Query: 72 KVIKP 76
I P
Sbjct: 348 VAIMP 352
>pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-Form
pdb|1GDE|B Chain B, Crystal Structure Of Pyrococcus Protein A-1 E-Form
pdb|1GD9|A Chain A, Crystall Structure Of Pyrococcus Protein-A1
pdb|1GD9|B Chain B, Crystall Structure Of Pyrococcus Protein-A1
Length = 389
Score = 22.7 bits (47), Expect = 7.7
Identities = 8/26 (30%), Positives = 16/26 (60%)
Query: 1 MLILSRKVNEGIVIDDNIHIKVISID 26
++++S +V E + DD H + S+D
Sbjct: 194 LIVISDEVYEHFIYDDARHYSIASLD 219
>pdb|1KSJ|B Chain B, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 152
Score = 22.7 bits (47), Expect = 7.7
Identities = 14/64 (21%), Positives = 28/64 (42%)
Query: 5 SRKVNEGIVIDDNIHIKVISIDRGSVRLGFEAPESTLILRAELKEAIVSENQKASVCVDE 64
S + E ++ ++ K ++ GF P ST ++ ++ A S+ ASV
Sbjct: 69 STEQXEKFRLEQKVYFKGQXLEEWFFEFGFVIPNSTNTWQSLIEAAPESQXXPASVLTGN 128
Query: 65 SLLE 68
++E
Sbjct: 129 VIIE 132
>pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
pdb|1DJU|B Chain B, Crystal Structure Of Aromatic Aminotransferase From
Pyrococcus Horikoshii Ot3
Length = 388
Score = 22.7 bits (47), Expect = 7.7
Identities = 8/26 (30%), Positives = 16/26 (60%)
Query: 1 MLILSRKVNEGIVIDDNIHIKVISID 26
++++S +V E + DD H + S+D
Sbjct: 193 LIVISDEVYEHFIYDDARHYSIASLD 218
>pdb|1WIO|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Tetragonal
Crystal Form
pdb|1WIO|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Tetragonal
Crystal Form
pdb|1WIP|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Monoclinic
Crystal Form
pdb|1WIP|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Monoclinic
Crystal Form
pdb|1WIQ|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Trigonal
Crystal Form
pdb|1WIQ|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Trigonal
Crystal Form
Length = 363
Score = 22.7 bits (47), Expect = 7.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 33 GFEAPESTLILRAELKEAIVSENQKA 58
G +P+ L L+ E KEA VS+ +KA
Sbjct: 307 GPTSPKLMLSLKLENKEAKVSKREKA 332
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.137 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 345,101
Number of Sequences: 13198
Number of extensions: 10451
Number of successful extensions: 29
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 15
length of query: 76
length of database: 2,899,336
effective HSP length: 52
effective length of query: 24
effective length of database: 2,213,040
effective search space: 53112960
effective search space used: 53112960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)