BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644775|ref|NP_206945.1| cbb3-type cytochrome c
oxidase subunit Q (CcoQ) [Helicobacter pylori 26695]
         (73 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1GV3|A  Chain A, The 2.0 Angstrom Resolution Structure O...    23  4.6

>pdb|1GV3|A Chain A, The 2.0 Angstrom Resolution Structure Of The Catalytic
          Portion Of A Cyanobacterial Membrane-Bound Manganese
          Superoxide Dismutase
 pdb|1GV3|B Chain B, The 2.0 Angstrom Resolution Structure Of The Catalytic
          Portion Of A Cyanobacterial Membrane-Bound Manganese
          Superoxide Dismutase
          Length = 248

 Score = 23.5 bits (49), Expect = 4.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 44 YGYLALNDALEDELIEPRHKKVH 66
          YGY AL  A++ E ++  H K H
Sbjct: 45 YGYDALEKAIDAETMKLHHDKHH 67



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.327    0.144    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,023
Number of Sequences: 13198
Number of extensions: 12274
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 1
length of query: 73
length of database: 2,899,336
effective HSP length: 49
effective length of query: 24
effective length of database: 2,252,634
effective search space: 54063216
effective search space used: 54063216
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)