BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646052|ref|NP_208234.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(268 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1J6X|B Chain B, Crystal Structure Of Helicobacter Pylor... 27 2.4
pdb|1H9J|A Chain A, Two Crystal Structures Of The Cytoplasm... 27 3.2
pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus ... 26 4.2
pdb|1RGS| Regulatory Subunit Of Camp Dependent Protein Ki... 26 5.4
>pdb|1J6X|B Chain B, Crystal Structure Of Helicobacter Pylori Luxs
pdb|1J6X|A Chain A, Crystal Structure Of Helicobacter Pylori Luxs
Length = 160
Score = 26.9 bits (58), Expect = 2.4
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
Query: 119 HLNQIFDWRLSLEELYSMGSLVGADTNFFISQYKSTNATSYGEVIENFEEEPLENRLEIY 178
H N + DW S G T F+++ N T EV+E ++ L+ + E+
Sbjct: 68 HANYVVDW-----------SPXGCQTGFYLTVLNHDNYTEILEVLEKTXQDVLKAK-EVP 115
Query: 179 APNHVFCSTKA 189
A N C A
Sbjct: 116 ASNEKQCGWAA 126
>pdb|1H9J|A Chain A, Two Crystal Structures Of The Cytoplasmic
Molybdate-Binding Protein Modg Suggest A Novel
Cooperative Binding Mechanism And Provide Insights Into
Ligand-Binding Specificity. Phosphate-Grown Form With
Molybdate And Phosphate Bound
pdb|1H9K|A Chain A, Two Crystal Structures Of The Cytoplasmic
Molybdate-Binding Protein Modg Suggest A Novel
Cooperative Binding Mechanism And Provide Insights Into
Ligand-Binding Specificity. Phosphate-Grown Form With
Tungstate And Phosphate Bound
pdb|1H9M|A Chain A, Two Crystal Structures Of The Cytoplasmic
Molybdate-Binding Protein Modg Suggest A Novel
Cooperative Binding Mechanism And Provide Insights Into
Ligand-Binding Specificity. Peg-Grown Form With
Molybdate Bound
pdb|1H9M|B Chain B, Two Crystal Structures Of The Cytoplasmic
Molybdate-Binding Protein Modg Suggest A Novel
Cooperative Binding Mechanism And Provide Insights Into
Ligand-Binding Specificity. Peg-Grown Form With
Molybdate Bound
Length = 145
Score = 26.6 bits (57), Expect = 3.2
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 20 KEGAYHKLISRMCLVKDKLKDIISVKSALSFSLKGDFDCPLEENSLFKALQILKNF---- 75
KEGA + + + DKL +++++SA S L E ++ KA +L
Sbjct: 20 KEGAVNAEVDILLGGGDKLAAVVTLESARSLQLAAG----KEVVAVVKAPWVLLMTDSSG 75
Query: 76 --LKSKNFSHSVIKSLDTLAIEVEKNIPTQAG 105
L ++N +K+++T A+ E + Q G
Sbjct: 76 YRLSARNILTGTVKTIETGAVNAEVTLALQGG 107
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii
Mevalonate Kinase
Length = 317
Score = 26.2 bits (56), Expect = 4.2
Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 18/161 (11%)
Query: 42 ISVKSALSFSLKGDFDCPLEENSLFKALQILKNFLKSKNFSH---------SVIKSLDTL 92
I + S + + + L N L K+L + N +K+ N ++ ++ +LD L
Sbjct: 33 IDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNEIKNINPNNFGDFKYCLCAIKNTLDYL 92
Query: 93 AIE--------VEKNIPTQAGLGGGSTDAGGLLYHLNQIFDWRLSLEELYSMGSLVGADT 144
IE + IP GLG ++ G + ++ ++ L +E+ +G +V +
Sbjct: 93 NIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEI 152
Query: 145 NFFISQYKSTNATSYGEV-IENFEEEPLENRLEIYAPNHVF 184
S ++ T G + I+N + ++ E + N F
Sbjct: 153 QGKASITDTSTITYKGILEIKNNKFRKIKGEFEEFLKNCKF 193
>pdb|1RGS| Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 25.8 bits (55), Expect = 5.4
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 204 KEWLKKPS-LECLKTYDRNGLNDLLKPALLTNQALKDIESELGKEWFFSGSGSA 256
+E+L K S LE L ++R + D L+P + ++ E G E+F GSA
Sbjct: 154 EEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSA 207
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.136 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,592,540
Number of Sequences: 13198
Number of extensions: 65218
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 4
length of query: 268
length of database: 2,899,336
effective HSP length: 87
effective length of query: 181
effective length of database: 1,751,110
effective search space: 316950910
effective search space used: 316950910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)