BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646058|ref|NP_208240.1| conserved hypothetical
protein [Helicobacter pylori 26695]
         (117 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1FDO|    Oxidized Form Of Formate Dehydrogenase H From E...    28  0.27

>pdb|1FDO|   Oxidized Form Of Formate Dehydrogenase H From E. Coli
 pdb|1FDI|   Oxidized Form Of Formate Dehydrogenase H From E. Coli Complexed
           With The Inhibitor Nitrite
 pdb|1AA6|   Reduced Form Of Formate Dehydrogenase H From E. Coli
          Length = 715

 Score = 28.1 bits (61), Expect = 0.27
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 12  IFTASIRGYQRFFSAFTP 29
           +FTA+ RG+QRFF A  P
Sbjct: 454 VFTAADRGFQRFFKAVEP 471



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.327    0.137    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 697,093
Number of Sequences: 13198
Number of extensions: 23812
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 1
length of query: 117
length of database: 2,899,336
effective HSP length: 76
effective length of query: 41
effective length of database: 1,896,288
effective search space: 77747808
effective search space used: 77747808
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (23.1 bits)