BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646063|ref|NP_208245.1| hypothetical protein
[Helicobacter pylori 26695]
(303 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|5PTD| Phosphatidylinositol-Specific Phospholipase C M... 29 0.76
pdb|4PTD| Phosphatidylinositol-Specific Phospholipase C M... 29 0.76
pdb|2PTD| Phosphatidylinositol-Specific Phospholipase C M... 29 0.76
pdb|7PTD| Phosphatidylinositol-Specific Phospholipase C M... 29 0.76
pdb|1GYM| Phosphatidylinositol-Specific Phospholipase C I... 29 0.76
pdb|6PTD| Phosphatidylinositol-Specific Phospholipase C M... 29 0.76
pdb|3PTD| Phosphatidylinositol-Specific Phospholipase C M... 29 0.76
pdb|1HWN|A Chain A, Ebulin Complexed With Galactose, Trigon... 28 0.99
pdb|1K0R|A Chain A, Crystal Structure Of Mycobacterium Tube... 28 1.3
pdb|1LA2|A Chain A, Structural Analysis Of Saccharomyces Ce... 27 2.9
pdb|1JKI|A Chain A, Myo-Inositol-1-Phosphate Synthase Compl... 27 2.9
pdb|1AXS|A Chain A, Mature Oxy-Cope Catalytic Antibody With... 25 8.4
pdb|1D5B|A Chain A, Unliganded Mature Oxy-Cope Catalytic An... 25 8.4
pdb|1EQ7|A Chain A, Core Structure Of The Outer Membrane Li... 25 8.4
pdb|1D6V|L Chain L, Conformation Effects In Biological Cata... 25 8.4
>pdb|5PTD| Phosphatidylinositol-Specific Phospholipase C Mutant H32a
Length = 298
Score = 28.9 bits (63), Expect = 0.76
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 168 IERILKAYSVPVGSLENYEKIYYQNAFKPKVQITFDNN---GDAEIKSALISAYARVLTP 224
I + K Y G+ +++ + + F + + + N GDA K L+ Y+ P
Sbjct: 111 IMSLKKEYEDMKGAEDSFSSTFEKKYFVDPIFLKTEGNIKLGDARGKIVLLKRYSGSNEP 170
Query: 225 SDEEKLYQIKNEVFTDSANGITRIRV 250
Y NE FT + N + V
Sbjct: 171 GGYNNFYWPDNETFTTTVNQNANVTV 196
>pdb|4PTD| Phosphatidylinositol-Specific Phospholipase C Mutant D274n
Length = 298
Score = 28.9 bits (63), Expect = 0.76
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 168 IERILKAYSVPVGSLENYEKIYYQNAFKPKVQITFDNN---GDAEIKSALISAYARVLTP 224
I + K Y G+ +++ + + F + + + N GDA K L+ Y+ P
Sbjct: 111 IMSLKKEYEDMKGAEDSFSSTFEKKYFVDPIFLKTEGNIKLGDARGKIVLLKRYSGSNEP 170
Query: 225 SDEEKLYQIKNEVFTDSANGITRIRV 250
Y NE FT + N + V
Sbjct: 171 GGYNNFYWPDNETFTTTVNQNANVTV 196
>pdb|2PTD| Phosphatidylinositol-Specific Phospholipase C Mutant D198e
Length = 298
Score = 28.9 bits (63), Expect = 0.76
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 168 IERILKAYSVPVGSLENYEKIYYQNAFKPKVQITFDNN---GDAEIKSALISAYARVLTP 224
I + K Y G+ +++ + + F + + + N GDA K L+ Y+ P
Sbjct: 111 IMSLKKEYEDMKGAEDSFSSTFEKKYFVDPIFLKTEGNIKLGDARGKIVLLKRYSGSNEP 170
Query: 225 SDEEKLYQIKNEVFTDSANGITRIRV 250
Y NE FT + N + V
Sbjct: 171 GGYNNFYWPDNETFTTTVNQNANVTV 196
>pdb|7PTD| Phosphatidylinositol-Specific Phospholipase C Mutant R163k
Length = 298
Score = 28.9 bits (63), Expect = 0.76
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 168 IERILKAYSVPVGSLENYEKIYYQNAFKPKVQITFDNN---GDAEIKSALISAYARVLTP 224
I + K Y G+ +++ + + F + + + N GDA K L+ Y+ P
Sbjct: 111 IMSLKKEYEDMKGAEDSFSSTFEKKYFVDPIFLKTEGNIKLGDARGKIVLLKKYSGSNEP 170
Query: 225 SDEEKLYQIKNEVFTDSANGITRIRV 250
Y NE FT + N + V
Sbjct: 171 GGYNNFYWPDNETFTTTVNQNANVTV 196
>pdb|1GYM| Phosphatidylinositol-Specific Phospholipase C In Complex With
Glucosamine-(Alpha-1-6)-Myo-Inositol
pdb|1PTG| Phosphatidylinositol-Specific Phospholipase C In Complex With
Myo-Inositol
pdb|1PTD| Phosphatidylinositol-Specific Phospholipase C
Length = 298
Score = 28.9 bits (63), Expect = 0.76
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 168 IERILKAYSVPVGSLENYEKIYYQNAFKPKVQITFDNN---GDAEIKSALISAYARVLTP 224
I + K Y G+ +++ + + F + + + N GDA K L+ Y+ P
Sbjct: 111 IMSLKKEYEDMKGAEDSFSSTFEKKYFVDPIFLKTEGNIKLGDARGKIVLLKRYSGSNEP 170
Query: 225 SDEEKLYQIKNEVFTDSANGITRIRV 250
Y NE FT + N + V
Sbjct: 171 GGYNNFYWPDNETFTTTVNQNANVTV 196
>pdb|6PTD| Phosphatidylinositol-Specific Phospholipase C Mutant H32l
Length = 298
Score = 28.9 bits (63), Expect = 0.76
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 168 IERILKAYSVPVGSLENYEKIYYQNAFKPKVQITFDNN---GDAEIKSALISAYARVLTP 224
I + K Y G+ +++ + + F + + + N GDA K L+ Y+ P
Sbjct: 111 IMSLKKEYEDMKGAEDSFSSTFEKKYFVDPIFLKTEGNIKLGDARGKIVLLKRYSGSNEP 170
Query: 225 SDEEKLYQIKNEVFTDSANGITRIRV 250
Y NE FT + N + V
Sbjct: 171 GGYNNFYWPDNETFTTTVNQNANVTV 196
>pdb|3PTD| Phosphatidylinositol-Specific Phospholipase C Mutant D274s
Length = 298
Score = 28.9 bits (63), Expect = 0.76
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 168 IERILKAYSVPVGSLENYEKIYYQNAFKPKVQITFDNN---GDAEIKSALISAYARVLTP 224
I + K Y G+ +++ + + F + + + N GDA K L+ Y+ P
Sbjct: 111 IMSLKKEYEDMKGAEDSFSSTFEKKYFVDPIFLKTEGNIKLGDARGKIVLLKRYSGSNEP 170
Query: 225 SDEEKLYQIKNEVFTDSANGITRIRV 250
Y NE FT + N + V
Sbjct: 171 GGYNNFYWPDNETFTTTVNQNANVTV 196
>pdb|1HWN|A Chain A, Ebulin Complexed With Galactose, Trigonal Crystal Form
pdb|1HWO|A Chain A, Ebulin Complexed With Lactose, Trigonal Crystal Form
pdb|1HWP|A Chain A, Ebulin Complexed With Pteroic Acid, Trigonal Crystal Form
pdb|1HWM|A Chain A, Ebulin,Orthorhombic Crystal Form Model
Length = 254
Score = 28.5 bits (62), Expect = 0.99
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 224 PSDEEKLYQIKNEVFTDSANGITRIRVVVSASDCQGTPVLNRSLEVDEKNKNFAITRL 281
PS L K+ + D + R RV + G PVL R EV KN+ F + RL
Sbjct: 4 PSVSFNLAGAKSTTYRDFLKNL-RDRVATGTYEVNGLPVLRRESEVQVKNR-FVLVRL 59
>pdb|1K0R|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Nusa
pdb|1K0R|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Nusa
Length = 366
Score = 28.1 bits (61), Expect = 1.3
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 60 ASISVVVNSQIHIQKSRVDNKLKSSDSQTINLKTDDLELNNVEIVNQEVQKGIYYTRVRI 119
A ++ ++Q H +R++ K+ + I +TD E N+ + +G
Sbjct: 48 ALLTAYRHTQGHQTDARIEIDRKTGVVRVIARETD--EAGNLISEWDDTPEGFGRIAATT 105
Query: 120 NQNLFLQGLRDKYNA-LYGQFSTLMPKVCKGVFLQQSKS 157
+ + LQ RD N YG+FST ++ GV + S++
Sbjct: 106 ARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQRDSRA 144
>pdb|1LA2|A Chain A, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|B Chain B, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|C Chain C, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|D Chain D, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
Length = 533
Score = 26.9 bits (58), Expect = 2.9
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 27 AYNKTNTQKGY-LYGSGSATSKEASKQKALADLVASISVVVNSQI 70
+YN GY L SKE SK + D++AS ++ N ++
Sbjct: 348 SYNHLGNNDGYNLSAPKQFRSKEISKSSVIDDIIASNDILYNDKL 392
>pdb|1JKI|A Chain A, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2-Deoxy-Glucitol-6-Phosphate
pdb|1JKI|B Chain B, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2-Deoxy-Glucitol-6-Phosphate
pdb|1JKF|A Chain A, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKF|B Chain B, Holo 1l-Myo-Inositol-1-Phosphate Synthase
Length = 533
Score = 26.9 bits (58), Expect = 2.9
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 27 AYNKTNTQKGY-LYGSGSATSKEASKQKALADLVASISVVVNSQI 70
+YN GY L SKE SK + D++AS ++ N ++
Sbjct: 348 SYNHLGNNDGYNLSAPKQFRSKEISKSSVIDDIIASNDILYNDKL 392
>pdb|1AXS|A Chain A, Mature Oxy-Cope Catalytic Antibody With Hapten
pdb|1AXS|L Chain L, Mature Oxy-Cope Catalytic Antibody With Hapten
Length = 211
Score = 25.4 bits (54), Expect = 8.4
Identities = 15/54 (27%), Positives = 24/54 (43%)
Query: 175 YSVPVGSLENYEKIYYQNAFKPKVQITFDNNGDAEIKSALISAYARVLTPSDEE 228
YS+ + SLE + Y + TF + EIK + + + PSDE+
Sbjct: 71 YSLTISSLEYEDMGIYYCLQYDEFPYTFGSGTKLEIKRTVAAPSVFIFPPSDEQ 124
>pdb|1D5B|A Chain A, Unliganded Mature Oxy-Cope Catalytic Antibody
pdb|1D5B|L Chain L, Unliganded Mature Oxy-Cope Catalytic Antibody
Length = 211
Score = 25.4 bits (54), Expect = 8.4
Identities = 15/54 (27%), Positives = 24/54 (43%)
Query: 175 YSVPVGSLENYEKIYYQNAFKPKVQITFDNNGDAEIKSALISAYARVLTPSDEE 228
YS+ + SLE + Y + TF + EIK + + + PSDE+
Sbjct: 71 YSLTISSLEYEDMGIYYCLQYDEFPYTFGSGTKLEIKRTVAAPSVFIFPPSDEQ 124
>pdb|1EQ7|A Chain A, Core Structure Of The Outer Membrane Lipoprotein From
Escherichia Coli At 1.9 Angstrom Resolution
Length = 56
Score = 25.4 bits (54), Expect = 8.4
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 83 SSDSQTINLKTDDLELNNVEIVNQEVQ 109
SSD QT+N K D L N+V + +VQ
Sbjct: 10 SSDVQTLNAKVDQLS-NDVNAMRSDVQ 35
>pdb|1D6V|L Chain L, Conformation Effects In Biological Catalysis Introduced By
Oxy-Cope Antibody Maturation
pdb|1D5I|L Chain L, Unliganded Germline Precursor Of An Oxy-Cope Catalytic
Antibody
Length = 211
Score = 25.4 bits (54), Expect = 8.4
Identities = 15/54 (27%), Positives = 24/54 (43%)
Query: 175 YSVPVGSLENYEKIYYQNAFKPKVQITFDNNGDAEIKSALISAYARVLTPSDEE 228
YS+ + SLE + Y + TF + EIK + + + PSDE+
Sbjct: 71 YSLTISSLEYEDMGIYYCLQYDEFPYTFGSGTKLEIKRTVAAPSVFIFPPSDEQ 124
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.130 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,600,294
Number of Sequences: 13198
Number of extensions: 62043
Number of successful extensions: 177
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 15
length of query: 303
length of database: 2,899,336
effective HSP length: 88
effective length of query: 215
effective length of database: 1,737,912
effective search space: 373651080
effective search space used: 373651080
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)