BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646064|ref|NP_208246.1| hypothetical protein
[Helicobacter pylori 26695]
(130 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin ... 26 1.3
pdb|1NOL| Oxygenated Hemocyanin (Subunit Type Ii) >gi|494... 25 2.2
pdb|1DVO|A Chain A, The X-Ray Crystal Structure Of Fino, A ... 25 2.2
pdb|1LL1| Hydroxo Bridge Met Form Hemocyanin From Limulus 25 2.2
pdb|1OXY| Hemocyanin Subunit Ii Complexed With Oxygen 25 2.2
pdb|1IIC|A Chain A, Crystal Structure Of Saccharomyces Cere... 25 2.9
pdb|2LIS|A Chain A, High Resolution Structure Of The Red Ab... 24 4.9
>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin
pdb|1QAG|B Chain B, Actin Binding Region Of The Dystrophin Homologue Utrophin
Length = 226
Score = 26.2 bits (56), Expect = 1.3
Identities = 14/36 (38%), Positives = 17/36 (46%)
Query: 27 LVLGVAWGKSLPKWAKDCSKGVQIEKTQTKDEKFLV 62
L LG+ W L KD K V + QT EK L+
Sbjct: 92 LTLGLLWSIILHWQVKDVXKDVXSDLQQTNSEKILL 127
>pdb|1NOL| Oxygenated Hemocyanin (Subunit Type Ii)
pdb|1LLA| Hemocyanin (Subunit Type Ii)
Length = 628
Score = 25.4 bits (54), Expect = 2.2
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 78 SSARQNALEKVMEAFKGDKI--EIKASELKATFIDTDK 113
S++ ++A ++ A K D++ EIKA EL+ T I+ DK
Sbjct: 451 SASDKHATVRIFLAPKYDELGNEIKADELRRTAIELDK 488
>pdb|1DVO|A Chain A, The X-Ray Crystal Structure Of Fino, A Repressor Of
Bacterial Conjugation
Length = 152
Score = 25.4 bits (54), Expect = 2.2
Identities = 14/54 (25%), Positives = 24/54 (43%)
Query: 59 KFLVCGMSDILLSDMDYSLSSARQNALEKVMEAFKGDKIEIKASELKATFIDTD 112
+ L CG+ D+LL D+ L + M+A + + A + A DT+
Sbjct: 62 RLLACGIRDVLLEDVAQRNIPLSHKKLRRAMKAITRSESYLCAMKAGACRYDTE 115
>pdb|1LL1| Hydroxo Bridge Met Form Hemocyanin From Limulus
Length = 590
Score = 25.4 bits (54), Expect = 2.2
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 78 SSARQNALEKVMEAFKGDKI--EIKASELKATFIDTDK 113
S++ ++A ++ A K D++ EIKA EL+ T I+ DK
Sbjct: 427 SASDKHATVRIFLAPKYDELGNEIKADELRRTAIELDK 464
>pdb|1OXY| Hemocyanin Subunit Ii Complexed With Oxygen
Length = 628
Score = 25.4 bits (54), Expect = 2.2
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 78 SSARQNALEKVMEAFKGDKI--EIKASELKATFIDTDK 113
S++ ++A ++ A K D++ EIKA EL+ T I+ DK
Sbjct: 451 SASDKHATVRIFLAPKYDELGNEIKADELRRTAIELDK 488
>pdb|1IIC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae N-
Myristoyltransferase With Bound Myristoylcoa
pdb|1IIC|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae N-
Myristoyltransferase With Bound Myristoylcoa
pdb|1IID|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae N-
Myristoyltransferase With Bound S-(2-Oxo)pentadecylcoa
And The Octapeptide Glyaskla
pdb|2NMT|A Chain A, Myristoyl-Coa:protein N-Myristoyltransferase Bound To
Myristoyl-Coa And Peptide Analogs
Length = 422
Score = 25.0 bits (53), Expect = 2.9
Identities = 9/22 (40%), Positives = 13/22 (58%)
Query: 33 WGKSLPKWAKDCSKGVQIEKTQ 54
W P W KD GV++++TQ
Sbjct: 89 WALKSPGWKKDWHIGVRVKETQ 110
>pdb|2LIS|A Chain A, High Resolution Structure Of The Red Abalone Lysin
Monomer
pdb|2LYN|A Chain A, High Resolution Structure Of Red Abalone Lysin Dimer
pdb|1LIS| Lysin
pdb|2LYN|D Chain D, High Resolution Structure Of Red Abalone Lysin Dimer
pdb|2LYN|C Chain C, High Resolution Structure Of Red Abalone Lysin Dimer
pdb|2LYN|B Chain B, High Resolution Structure Of Red Abalone Lysin Dimer
pdb|1LYN|A Chain A, Sperm Lysin
pdb|1LYN|B Chain B, Sperm Lysin
Length = 136
Score = 24.3 bits (51), Expect = 4.9
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 7 KSWAWLKSRVLMKRLAIALVLVLGVAWGKSLPKWAK 42
+SW +++ + L K +AL + + + + L KW +
Sbjct: 1 RSWHYVEPKFLNKAFEVALKVQIIAGFDRGLVKWLR 36
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 677,328
Number of Sequences: 13198
Number of extensions: 22350
Number of successful extensions: 58
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 7
length of query: 130
length of database: 2,899,336
effective HSP length: 78
effective length of query: 52
effective length of database: 1,869,892
effective search space: 97234384
effective search space used: 97234384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)