BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646065|ref|NP_208247.1| membrane-associated
lipoprotein (lpp20) [Helicobacter pylori 26695]
(175 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1A3Y|B Chain B, Odorant Binding Protein From Nasal Muco... 28 0.76
pdb|1DZP|A Chain A, Porcine Odorant Binding Protein Complex... 28 0.76
pdb|1A3Y|A Chain A, Odorant Binding Protein From Nasal Muco... 28 0.76
pdb|1BWV|A Chain A, Activated Ribulose 1,5-Bisphosphate Car... 27 1.00
pdb|1I3P|A Chain A, The 3.1 Angstrom Resolution Crystal Str... 26 2.9
pdb|1GK8|A Chain A, Rubisco From Chlamydomonas Reinhardtii ... 25 6.5
pdb|8RUC|A Chain A, Activated Spinach Rubisco Complexed Wit... 25 6.5
pdb|1RXO|B Chain B, Activated Spinach Rubisco In Complex Wi... 25 6.5
pdb|1RLD|A Chain A, Ribulose-1,5-Bisphosphate CarboxylaseOX... 24 8.5
pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539... 24 8.5
pdb|1EJ7|L Chain L, Crystal Structure Of Unactivated Tobacc... 24 8.5
pdb|1QBA| Bacterial Chitobiase, Glycosyl Hydrolase Family... 24 8.5
pdb|3RUB|L Chain L, Ribulose 1,5-Bisphosphate Carboxylase(S... 24 8.5
pdb|1RCO|B Chain B, Spinach Rubisco In Complex With The Inh... 24 8.5
pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540... 24 8.5
pdb|4RUB|A Chain A, Ribulose 1,5-Bisphosphate Carboxylase(S... 24 8.5
>pdb|1A3Y|B Chain B, Odorant Binding Protein From Nasal Mucosa Of Pig
Length = 149
Score = 27.7 bits (60), Expect = 0.76
Identities = 19/75 (25%), Positives = 33/75 (43%), Gaps = 1/75 (1%)
Query: 77 DVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGK-RSISGTDTEKISQLVDK 135
DV+Y+ N + A+ A + S + D E +KT GK I D EK ++ +
Sbjct: 71 DVNYAGNNKFVVSYASETALIISNINVDEEGDKTIMTGLLGKGTDIEDQDLEKFKEVTRE 130
Query: 136 ELIASKMLARYVGKD 150
I + + + +D
Sbjct: 131 NGIPEENIVNIIERD 145
>pdb|1DZP|A Chain A, Porcine Odorant Binding Protein Complexed With
Diphenylmethanone
pdb|1E00|A Chain A, Porcine Odorant Binding Protein Complexed With
2,6-Dimethyl-7-Octen-2-Ol
pdb|1DZM|A Chain A, Porcine Odorant Binding Protein Complexed With Benzoic
Acid Phenylmethylester
pdb|1E06|A Chain A, Porcine Odorant Binding Protein Complexed With
5-Methyl-2-(1-Methylethyl)phenol
pdb|1E02|A Chain A, Porcine Odorant Binding Protein Complexed With Undecanal
pdb|1HQP|A Chain A, Crystal Structure Of A Truncated Form Of Porcine Odorant-
Binding Protein
pdb|1DZK|A Chain A, Porcine Odorant Binding Protein Complexed With Pyrazine
(2-Isobutyl-3-Metoxypyrazine)
pdb|1DZK|B Chain B, Porcine Odorant Binding Protein Complexed With Pyrazine
(2-Isobutyl-3-Metoxypyrazine)
pdb|1E00|B Chain B, Porcine Odorant Binding Protein Complexed With
2,6-Dimethyl-7-Octen-2-Ol
pdb|1DZJ|A Chain A, Porcine Odorant Binding Protein Complexed With
2-Amino-4-Butyl-5-Propylselenazole
pdb|1DZJ|B Chain B, Porcine Odorant Binding Protein Complexed With
2-Amino-4-Butyl-5-Propylselenazole
pdb|1DZP|B Chain B, Porcine Odorant Binding Protein Complexed With
Diphenylmethanone
pdb|1DZM|B Chain B, Porcine Odorant Binding Protein Complexed With Benzoic
Acid Phenylmethylester
pdb|1E06|B Chain B, Porcine Odorant Binding Protein Complexed With
5-Methyl-2-(1-Methylethyl)phenol
pdb|1E02|B Chain B, Porcine Odorant Binding Protein Complexed With Undecanal
Length = 157
Score = 27.7 bits (60), Expect = 0.76
Identities = 19/75 (25%), Positives = 33/75 (43%), Gaps = 1/75 (1%)
Query: 77 DVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGK-RSISGTDTEKISQLVDK 135
DV+Y+ N + A+ A + S + D E +KT GK I D EK ++ +
Sbjct: 79 DVNYAGNNKFVVSYASETALIISNINVDEEGDKTIMTGLLGKGTDIEDQDLEKFKEVTRE 138
Query: 136 ELIASKMLARYVGKD 150
I + + + +D
Sbjct: 139 NGIPEENIVNIIERD 153
>pdb|1A3Y|A Chain A, Odorant Binding Protein From Nasal Mucosa Of Pig
Length = 149
Score = 27.7 bits (60), Expect = 0.76
Identities = 19/75 (25%), Positives = 33/75 (43%), Gaps = 1/75 (1%)
Query: 77 DVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGK-RSISGTDTEKISQLVDK 135
DV+Y+ N + A+ A + S + D E +KT GK I D EK ++ +
Sbjct: 71 DVNYAGNNKFVVSYASETALIISNINVDEEGDKTIMTGLLGKGTDIEDQDLEKFKEVTRE 130
Query: 136 ELIASKMLARYVGKD 150
I + + + +D
Sbjct: 131 NGIPEENIVNIIERD 145
>pdb|1BWV|A Chain A, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(Rubisco) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
pdb|1BWV|C Chain C, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(Rubisco) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
pdb|1BWV|E Chain E, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(Rubisco) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
pdb|1BWV|G Chain G, Activated Ribulose 1,5-Bisphosphate CarboxylaseOXYGENASE
(Rubisco) Complexed With The Reaction Intermediate
Analogue 2-Carboxyarabinitol 1,5-Bisphosphate
Length = 493
Score = 27.3 bits (59), Expect = 1.00
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 19 IVGCSHAPKSGISKSN--KAYKEATKGAPDWVVGD 51
++GC+ PK G+S N + EA KG D+V D
Sbjct: 178 LLGCTTKPKLGLSGKNYGRVVYEALKGGLDFVXDD 212
>pdb|1I3P|A Chain A, The 3.1 Angstrom Resolution Crystal Structure Of A Mutated
Baculovirus P35 After Caspase Cleavage
Length = 298
Score = 25.8 bits (55), Expect = 2.9
Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 17/131 (12%)
Query: 5 VKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEKYSGV 64
+ KI+ + ++++ P +++ N ++ K PD LEK YS
Sbjct: 30 INKIMNTQLTKPVLMMFNISGPIRSVTRKNNNLRDRIKSKPDEQFDQLEK-----DYSDQ 84
Query: 65 FLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRSISGT 124
G + + D YS + LKS K L++ D + K+SI
Sbjct: 85 MDGFHDSIKYFKDEHYSVSCQNGSV-------LKSKFAKILKSH-----DYTDKKSIEAY 132
Query: 125 DTEKISQLVDK 135
+ + +LVD+
Sbjct: 133 EKYCLPKLVDE 143
>pdb|1GK8|A Chain A, Rubisco From Chlamydomonas Reinhardtii
pdb|1GK8|C Chain C, Rubisco From Chlamydomonas Reinhardtii
pdb|1IR2|U Chain U, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
Chlamydomonas Reinhardtii Complexed With 2-
Carboxyarabinitol-1,5-Bisphosphate (2-Cabp)
pdb|1IR2|V Chain V, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
Chlamydomonas Reinhardtii Complexed With 2-
Carboxyarabinitol-1,5-Bisphosphate (2-Cabp)
pdb|1IR2|A Chain A, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
Chlamydomonas Reinhardtii Complexed With 2-
Carboxyarabinitol-1,5-Bisphosphate (2-Cabp)
pdb|1IR2|H Chain H, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
Chlamydomonas Reinhardtii Complexed With 2-
Carboxyarabinitol-1,5-Bisphosphate (2-Cabp)
pdb|1GK8|G Chain G, Rubisco From Chlamydomonas Reinhardtii
pdb|1IR2|B Chain B, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
Chlamydomonas Reinhardtii Complexed With 2-
Carboxyarabinitol-1,5-Bisphosphate (2-Cabp)
pdb|1IR2|D Chain D, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
Chlamydomonas Reinhardtii Complexed With 2-
Carboxyarabinitol-1,5-Bisphosphate (2-Cabp)
pdb|1IR2|C Chain C, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
Chlamydomonas Reinhardtii Complexed With 2-
Carboxyarabinitol-1,5-Bisphosphate (2-Cabp)
pdb|1IR2|G Chain G, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
Chlamydomonas Reinhardtii Complexed With 2-
Carboxyarabinitol-1,5-Bisphosphate (2-Cabp)
pdb|1IR2|T Chain T, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
Chlamydomonas Reinhardtii Complexed With 2-
Carboxyarabinitol-1,5-Bisphosphate (2-Cabp)
pdb|1IR2|W Chain W, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
Chlamydomonas Reinhardtii Complexed With 2-
Carboxyarabinitol-1,5-Bisphosphate (2-Cabp)
pdb|1IR2|X Chain X, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
Chlamydomonas Reinhardtii Complexed With 2-
Carboxyarabinitol-1,5-Bisphosphate (2-Cabp)
pdb|1IR2|Z Chain Z, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
Chlamydomonas Reinhardtii Complexed With 2-
Carboxyarabinitol-1,5-Bisphosphate (2-Cabp)
pdb|1GK8|E Chain E, Rubisco From Chlamydomonas Reinhardtii
pdb|1IR2|E Chain E, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
Chlamydomonas Reinhardtii Complexed With 2-
Carboxyarabinitol-1,5-Bisphosphate (2-Cabp)
pdb|1IR2|F Chain F, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
Chlamydomonas Reinhardtii Complexed With 2-
Carboxyarabinitol-1,5-Bisphosphate (2-Cabp)
pdb|1IR2|S Chain S, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
Chlamydomonas Reinhardtii Complexed With 2-
Carboxyarabinitol-1,5-Bisphosphate (2-Cabp)
pdb|1IR2|Y Chain Y, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) FROM GREEN ALGA,
Chlamydomonas Reinhardtii Complexed With 2-
Carboxyarabinitol-1,5-Bisphosphate (2-Cabp)
Length = 475
Score = 24.6 bits (52), Expect = 6.5
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 19 IVGCSHAPKSGISKSN--KAYKEATKGAPDWVVGD 51
++GC+ PK G+S N +A E +G D+ D
Sbjct: 169 LLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTXDD 203
>pdb|8RUC|A Chain A, Activated Spinach Rubisco Complexed With
2-Carboxyarabinitol Bisphosphate
pdb|8RUC|C Chain C, Activated Spinach Rubisco Complexed With
2-Carboxyarabinitol Bisphosphate
pdb|8RUC|E Chain E, Activated Spinach Rubisco Complexed With
2-Carboxyarabinitol Bisphosphate
pdb|8RUC|G Chain G, Activated Spinach Rubisco Complexed With
2-Carboxyarabinitol Bisphosphate
pdb|1IR1|A Chain A, Crystal Structure Of Spinach Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+
And 2-Carboxyarabinitol-1,5-Bisphosphate
pdb|1IR1|B Chain B, Crystal Structure Of Spinach Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+
And 2-Carboxyarabinitol-1,5-Bisphosphate
pdb|1IR1|C Chain C, Crystal Structure Of Spinach Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+
And 2-Carboxyarabinitol-1,5-Bisphosphate
pdb|1IR1|D Chain D, Crystal Structure Of Spinach Ribulose-1,5-Bisphosphate
CarboxylaseOXYGENASE (RUBISCO) COMPLEXED WITH CO2, MG2+
And 2-Carboxyarabinitol-1,5-Bisphosphate
Length = 475
Score = 24.6 bits (52), Expect = 6.5
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 19 IVGCSHAPKSGISKSN--KAYKEATKGAPDWVVGD 51
++GC+ PK G+S N +A E +G D+ D
Sbjct: 169 LLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTXDD 203
>pdb|1RXO|B Chain B, Activated Spinach Rubisco In Complex With Its Substrate
Ribulose-1,5-Bisphosphate And Calcium
pdb|1RXO|E Chain E, Activated Spinach Rubisco In Complex With Its Substrate
Ribulose-1,5-Bisphosphate And Calcium
pdb|1RXO|H Chain H, Activated Spinach Rubisco In Complex With Its Substrate
Ribulose-1,5-Bisphosphate And Calcium
pdb|1RXO|L Chain L, Activated Spinach Rubisco In Complex With Its Substrate
Ribulose-1,5-Bisphosphate And Calcium
pdb|1AA1|B Chain B, Activated Spinach Rubisco In Complex With The Product
3-Phosphoglycerate
pdb|1AA1|E Chain E, Activated Spinach Rubisco In Complex With The Product
3-Phosphoglycerate
pdb|1AA1|H Chain H, Activated Spinach Rubisco In Complex With The Product
3-Phosphoglycerate
pdb|1AA1|L Chain L, Activated Spinach Rubisco In Complex With The Product
3-Phosphoglycerate
Length = 475
Score = 24.6 bits (52), Expect = 6.5
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 19 IVGCSHAPKSGISKSN--KAYKEATKGAPDWVVGD 51
++GC+ PK G+S N +A E +G D+ D
Sbjct: 169 LLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTXDD 203
>pdb|1RLD|A Chain A, Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE (RUBISCO)
(E.C.4.1.1.39)
pdb|1RLD|B Chain B, Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE (RUBISCO)
(E.C.4.1.1.39)
Length = 446
Score = 24.3 bits (51), Expect = 8.5
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 19 IVGCSHAPKSGISKSN--KAYKEATKGAPDWVVGD 51
++GC+ PK G+S N +A E +G D+ D
Sbjct: 148 LLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDD 182
>pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539a Complexed With
Di- N-Acetyl-Beta-D-Glucosamine (Chitobiase)
Length = 858
Score = 24.3 bits (51), Expect = 8.5
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 24 HAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEKYSGVFLGRAEDL 72
H+P+ + N +K A + GDL K+ K+SG G+A ++
Sbjct: 63 HSPRQTLRVDNDQFKIAH------LTGDLYKLEPTAKFSGFPAGKAVEI 105
>pdb|1EJ7|L Chain L, Crystal Structure Of Unactivated Tobacco Rubisco With
Bound Phosphate Ions
Length = 475
Score = 24.3 bits (51), Expect = 8.5
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 19 IVGCSHAPKSGISKSN--KAYKEATKGAPDWVVGD 51
++GC+ PK G+S N +A E +G D+ D
Sbjct: 167 LLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDD 201
>pdb|1QBA| Bacterial Chitobiase, Glycosyl Hydrolase Family 20
pdb|1QBB| Bacterial Chitobiase Complexed With Chitobiose (Dinag)
Length = 858
Score = 24.3 bits (51), Expect = 8.5
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 24 HAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEKYSGVFLGRAEDL 72
H+P+ + N +K A + GDL K+ K+SG G+A ++
Sbjct: 63 HSPRQTLRVDNDQFKIAH------LTGDLYKLEPTAKFSGFPAGKAVEI 105
>pdb|3RUB|L Chain L, Ribulose 1,5-Bisphosphate Carboxylase(Slash)oxygenase
(Form III) (E.C.4.1.1.39)
Length = 477
Score = 24.3 bits (51), Expect = 8.5
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 19 IVGCSHAPKSGISKSN--KAYKEATKGAPDWVVGD 51
++GC+ PK G+S N +A E +G D+ D
Sbjct: 169 LLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDD 203
>pdb|1RCO|B Chain B, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2,2-Diol-1,5-Bisphosphate
pdb|1RCO|E Chain E, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2,2-Diol-1,5-Bisphosphate
pdb|1RCO|H Chain H, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2,2-Diol-1,5-Bisphosphate
pdb|1RCO|K Chain K, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2,2-Diol-1,5-Bisphosphate
pdb|1RCO|L Chain L, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2,2-Diol-1,5-Bisphosphate
pdb|1RCO|O Chain O, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2,2-Diol-1,5-Bisphosphate
pdb|1RCO|R Chain R, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2,2-Diol-1,5-Bisphosphate
pdb|1RCO|V Chain V, Spinach Rubisco In Complex With The Inhibitor
D-Xylulose-2,2-Diol-1,5-Bisphosphate
pdb|1RBO|B Chain B, Spinach Rubisco In Complex With The Inhibitor
2-Carboxyarabinitol-1,5-Diphosphate
pdb|1RBO|E Chain E, Spinach Rubisco In Complex With The Inhibitor
2-Carboxyarabinitol-1,5-Diphosphate
pdb|1RBO|H Chain H, Spinach Rubisco In Complex With The Inhibitor
2-Carboxyarabinitol-1,5-Diphosphate
pdb|1RBO|L Chain L, Spinach Rubisco In Complex With The Inhibitor
2-Carboxyarabinitol-1,5-Diphosphate
pdb|1RCX|B Chain B, Non-Activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-Bisphosphate
pdb|1RCX|E Chain E, Non-Activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-Bisphosphate
pdb|1RCX|H Chain H, Non-Activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-Bisphosphate
pdb|1RCX|K Chain K, Non-Activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-Bisphosphate
pdb|1RCX|L Chain L, Non-Activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-Bisphosphate
pdb|1RCX|O Chain O, Non-Activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-Bisphosphate
pdb|1RCX|R Chain R, Non-Activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-Bisphosphate
pdb|1RCX|V Chain V, Non-Activated Spinach Rubisco In Complex With Its
Substrate Ribulose-1,5-Bisphosphate
pdb|1AUS|L Chain L, Activated Unliganded Spinach Rubisco
Length = 475
Score = 24.3 bits (51), Expect = 8.5
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 19 IVGCSHAPKSGISKSN--KAYKEATKGAPDWVVGD 51
++GC+ PK G+S N +A E +G D+ D
Sbjct: 169 LLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDD 203
>pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540d Complexed With
Di- N Acetyl-D-Glucosamine (Chitobiase)
Length = 858
Score = 24.3 bits (51), Expect = 8.5
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 24 HAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEKYSGVFLGRAEDL 72
H+P+ + N +K A + GDL K+ K+SG G+A ++
Sbjct: 63 HSPRQTLRVDNDQFKIAH------LTGDLYKLEPTAKFSGFPAGKAVEI 105
>pdb|4RUB|A Chain A, Ribulose 1,5-Bisphosphate Carboxylase(Slash)oxygenase
(Form IV) (E.C.4.1.1.39)
pdb|4RUB|B Chain B, Ribulose 1,5-Bisphosphate Carboxylase(Slash)oxygenase
(Form IV) (E.C.4.1.1.39)
pdb|4RUB|C Chain C, Ribulose 1,5-Bisphosphate Carboxylase(Slash)oxygenase
(Form IV) (E.C.4.1.1.39)
pdb|4RUB|D Chain D, Ribulose 1,5-Bisphosphate Carboxylase(Slash)oxygenase
(Form IV) (E.C.4.1.1.39)
pdb|1RLC|L Chain L, Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE (RUBISCO)
(E.C.4.1.1.39) Complex With
2-Carboxy-D-Arabinitol-1,5-Bisphosphate(Cabp)
Length = 477
Score = 24.3 bits (51), Expect = 8.5
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 19 IVGCSHAPKSGISKSN--KAYKEATKGAPDWVVGD 51
++GC+ PK G+S N +A E +G D+ D
Sbjct: 169 LLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDD 203
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.311 0.128 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 885,078
Number of Sequences: 13198
Number of extensions: 33626
Number of successful extensions: 108
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 16
length of query: 175
length of database: 2,899,336
effective HSP length: 82
effective length of query: 93
effective length of database: 1,817,100
effective search space: 168990300
effective search space used: 168990300
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)