BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646066|ref|NP_208248.1| hypothetical protein
[Helicobacter pylori 26695]
         (210 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1KOH|C  Chain C, The Crystal Structure And Mutational An...    26  3.0
pdb|1KJU|A  Chain A, Ca2+-Atpase In The E2 State >gi|2320015...    26  3.0
pdb|1KOO|C  Chain C, The Crystal Structure And Mutational An...    26  3.0
pdb|1FWF|C  Chain C, Klebsiella Aerogenes Urease, C319d Variant    25  6.6
pdb|1EJT|C  Chain C, Crystal Structure Of The H219q Variant ...    25  6.6
pdb|1KRC|C  Chain C, Active Site Mutant, Nickel Metalloenzym...    25  6.6
pdb|1EF2|A  Chain A, Crystal Structure Of Manganese-Substitu...    25  6.6
pdb|1FWI|C  Chain C, Klebsiella Aerogenes Urease, H134a Variant    25  6.6
pdb|1A5K|C  Chain C, K217e Variant Of Klebsiella Aerogenes U...    25  6.6
pdb|1A5O|C  Chain C, K217c Variant Of Klebsiella Aerogenes U...    25  6.6
pdb|1A5M|C  Chain C, K217a Variant Of Klebsiella Aerogenes U...    25  6.6
pdb|2KAU|C  Chain C, Molecule: Klebsiella Aerogenes Urease; ...    25  6.6
pdb|1FT8|C  Chain C, Crystal Structure Of The Rna-Binding Do...    25  6.6
pdb|1A5L|C  Chain C, K217c Variant Of Klebsiella Aerogenes U...    25  6.6
pdb|1FO1|A  Chain A, Crystal Structure Of The Rna-Binding Do...    25  6.6
pdb|1FWH|C  Chain C, Klebsiella Aerogenes Urease, C319y Variant    25  6.6
pdb|1FWJ|C  Chain C, Klebsiella Aerogenes Urease, Native           25  6.6
pdb|1F76|A  Chain A, Escherichia Coli Dihydroorotate Dehydro...    25  6.6
pdb|1EJU|C  Chain C, Crystal Structure Of The H320n Variant ...    25  6.6
pdb|1FWG|C  Chain C, Klebsiella Aerogenes Urease, C319s Variant    25  6.6
pdb|1EJV|C  Chain C, Crystal Structure Of The H320q Variant ...    25  6.6
pdb|1EJS|C  Chain C, Crystal Structure Of The H219n Variant ...    25  6.6
pdb|1KRB|C  Chain C, Active Site Mutant, Nickel Metalloenzym...    25  6.6
pdb|1EJR|C  Chain C, Crystal Structure Of The D221a Variant ...    25  6.6
pdb|1FWA|C  Chain C, Klebsiella Aerogenes Urease, C319a Vari...    25  6.6

>pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
           Rna-Binding Domain Found In The Human Tap Nuclear Mrna
           Export Factor
 pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
           Rna-Binding Domain Found In The Human Tap Nuclear Mrna
           Export Factor
 pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
           Rna-Binding Domain Found In The Human Tap Nuclear Mrna
           Export Factor
 pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
           Rna-Binding Domain Found In The Human Tap Nuclear Mrna
           Export Factor
          Length = 277

 Score = 26.2 bits (56), Expect = 3.0
 Identities = 25/101 (24%), Positives = 45/101 (43%), Gaps = 11/101 (10%)

Query: 77  VSDVINDTTQPNLDMNLLTTEIARQLRLRSNGRFN-ITRASGGSGIAADSRMVKQREKER 135
           +S +IN +  P+  +N L  E   QL+L  + R++   +A    G+ +D  +V Q     
Sbjct: 92  ISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQ----- 146

Query: 136 ESEEYNQDTTVEKGTLKAADLSLSGKVSSIAASISSSRQRL 176
                N D  + + +  AA L +  +      S++ S  RL
Sbjct: 147 -----NIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRL 182



>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
 pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
           Ca2+
 pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
           Ca2+
 pdb|1EUL|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
           Ions
          Length = 994

 Score = 26.2 bits (56), Expect = 3.0
 Identities = 21/79 (26%), Positives = 32/79 (39%)

Query: 132 EKERESEEYNQDTTVEKGTLKAADLSLSGKVSSIAASISSSRQRLDYDFTLSLTNRKTGE 191
           EK  E+ E    T VEK  +   ++    KV    A  S  RQ +  +FTL  +  +   
Sbjct: 435 EKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSM 494

Query: 192 EVWSDVKPIVKNASNKRMF 210
            V+       + A   +MF
Sbjct: 495 SVYCSPAKSSRAAVGNKMF 513



>pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
           Rna-Binding Domain Found In The Human Tap Nuclear Mrna
           Export Factor
 pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
           Rna-Binding Domain Found In The Human Tap Nuclear Mrna
           Export Factor
 pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
           Rna-Binding Domain Found In The Human Tap Nuclear Mrna
           Export Factor
 pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
           Rna-Binding Domain Found In The Human Tap Nuclear Mrna
           Export Factor
          Length = 277

 Score = 26.2 bits (56), Expect = 3.0
 Identities = 25/101 (24%), Positives = 45/101 (43%), Gaps = 11/101 (10%)

Query: 77  VSDVINDTTQPNLDMNLLTTEIARQLRLRSNGRFN-ITRASGGSGIAADSRMVKQREKER 135
           +S +IN +  P+  +N L  E   QL+L  + R++   +A    G+ +D  +V Q     
Sbjct: 92  ISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQ----- 146

Query: 136 ESEEYNQDTTVEKGTLKAADLSLSGKVSSIAASISSSRQRL 176
                N D  + + +  AA L +  +      S++ S  RL
Sbjct: 147 -----NIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRL 182



>pdb|1FWF|C Chain C, Klebsiella Aerogenes Urease, C319d Variant
          Length = 567

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 8/30 (26%), Positives = 21/30 (69%)

Query: 69  LKGKHLIEVSDVINDTTQPNLDMNLLTTEI 98
           +KG   ++ +D+++++ QPN+ ++  T E+
Sbjct: 514 VKGCRTVQKADMVHNSLQPNITVDAQTYEV 543



>pdb|1EJT|C Chain C, Crystal Structure Of The H219q Variant Of Klebsiella
           Aerogenes Urease
          Length = 567

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 8/30 (26%), Positives = 21/30 (69%)

Query: 69  LKGKHLIEVSDVINDTTQPNLDMNLLTTEI 98
           +KG   ++ +D+++++ QPN+ ++  T E+
Sbjct: 514 VKGCRTVQKADMVHNSLQPNITVDAQTYEV 543



>pdb|1KRC|C Chain C, Active Site Mutant, Nickel Metalloenzyme Mol_id: 1;
           Molecule: Urease; Chain: A, B, C; Ec: 3.5.1.5; Mutation:
           H(C 320)a; Heterogen: Carbon Dioxide; Heterogen: Nickel
          Length = 567

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 8/30 (26%), Positives = 21/30 (69%)

Query: 69  LKGKHLIEVSDVINDTTQPNLDMNLLTTEI 98
           +KG   ++ +D+++++ QPN+ ++  T E+
Sbjct: 514 VKGCRTVQKADMVHNSLQPNITVDAQTYEV 543



>pdb|1EF2|A Chain A, Crystal Structure Of Manganese-Substituted Klebsiella
           Aerogenes Urease
          Length = 566

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 8/30 (26%), Positives = 21/30 (69%)

Query: 69  LKGKHLIEVSDVINDTTQPNLDMNLLTTEI 98
           +KG   ++ +D+++++ QPN+ ++  T E+
Sbjct: 513 VKGCRTVQKADMVHNSLQPNITVDAQTYEV 542



>pdb|1FWI|C Chain C, Klebsiella Aerogenes Urease, H134a Variant
          Length = 567

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 8/30 (26%), Positives = 21/30 (69%)

Query: 69  LKGKHLIEVSDVINDTTQPNLDMNLLTTEI 98
           +KG   ++ +D+++++ QPN+ ++  T E+
Sbjct: 514 VKGCRTVQKADMVHNSLQPNITVDAQTYEV 543



>pdb|1A5K|C Chain C, K217e Variant Of Klebsiella Aerogenes Urease
          Length = 566

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 8/30 (26%), Positives = 21/30 (69%)

Query: 69  LKGKHLIEVSDVINDTTQPNLDMNLLTTEI 98
           +KG   ++ +D+++++ QPN+ ++  T E+
Sbjct: 513 VKGCRTVQKADMVHNSLQPNITVDAQTYEV 542



>pdb|1A5O|C Chain C, K217c Variant Of Klebsiella Aerogenes Urease, Chemically
           Rescued By Formate And Nickel
          Length = 566

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 8/30 (26%), Positives = 21/30 (69%)

Query: 69  LKGKHLIEVSDVINDTTQPNLDMNLLTTEI 98
           +KG   ++ +D+++++ QPN+ ++  T E+
Sbjct: 513 VKGCRTVQKADMVHNSLQPNITVDAQTYEV 542



>pdb|1A5M|C Chain C, K217a Variant Of Klebsiella Aerogenes Urease
 pdb|1A5N|C Chain C, K217a Variant Of Klebsiella Aerogenes Urease, Chemically
           Rescued By Formate And Nickel
          Length = 566

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 8/30 (26%), Positives = 21/30 (69%)

Query: 69  LKGKHLIEVSDVINDTTQPNLDMNLLTTEI 98
           +KG   ++ +D+++++ QPN+ ++  T E+
Sbjct: 513 VKGCRTVQKADMVHNSLQPNITVDAQTYEV 542



>pdb|2KAU|C Chain C, Molecule: Klebsiella Aerogenes Urease; Ec: 3.5.1.5;
           Synonyms: Urea Amidohydrolase, Urease; Engineered
 pdb|1KRA|C Chain C, Apoenzyme, Nickel Metalloenzyme Mol_id: 1; Molecule:
           Urease; Chain: A, B, C; Ec: 3.5.1.5
          Length = 567

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 8/30 (26%), Positives = 21/30 (69%)

Query: 69  LKGKHLIEVSDVINDTTQPNLDMNLLTTEI 98
           +KG   ++ +D+++++ QPN+ ++  T E+
Sbjct: 514 VKGCRTVQKADMVHNSLQPNITVDAQTYEV 543



>pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
           Export Factor Tap
 pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
           Export Factor Tap
 pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
           Export Factor Tap
 pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
           Export Factor Tap
 pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
           Export Factor Tap
          Length = 271

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 24/101 (23%), Positives = 44/101 (42%), Gaps = 11/101 (10%)

Query: 77  VSDVINDTTQPNLDMNLLTTEIARQLRLRSNGRFN-ITRASGGSGIAADSRMVKQREKER 135
           +S +IN +  P+  +N L  E   QL+L  + R++   +     G+ +D  +V Q     
Sbjct: 86  ISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQVLDLKGLRSDPDLVAQ----- 140

Query: 136 ESEEYNQDTTVEKGTLKAADLSLSGKVSSIAASISSSRQRL 176
                N D  + + +  AA L +  +      S++ S  RL
Sbjct: 141 -----NIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRL 176



>pdb|1A5L|C Chain C, K217c Variant Of Klebsiella Aerogenes Urease
          Length = 566

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 8/30 (26%), Positives = 21/30 (69%)

Query: 69  LKGKHLIEVSDVINDTTQPNLDMNLLTTEI 98
           +KG   ++ +D+++++ QPN+ ++  T E+
Sbjct: 513 VKGCRTVQKADMVHNSLQPNITVDAQTYEV 542



>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
           Export Factor Tap
 pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
           Export Factor Tap
          Length = 271

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 24/101 (23%), Positives = 44/101 (42%), Gaps = 11/101 (10%)

Query: 77  VSDVINDTTQPNLDMNLLTTEIARQLRLRSNGRFN-ITRASGGSGIAADSRMVKQREKER 135
           +S +IN +  P+  +N L  E   QL+L  + R++   +     G+ +D  +V Q     
Sbjct: 86  ISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQVLDLKGLRSDPDLVAQ----- 140

Query: 136 ESEEYNQDTTVEKGTLKAADLSLSGKVSSIAASISSSRQRL 176
                N D  + + +  AA L +  +      S++ S  RL
Sbjct: 141 -----NIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRL 176



>pdb|1FWH|C Chain C, Klebsiella Aerogenes Urease, C319y Variant
          Length = 567

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 8/30 (26%), Positives = 21/30 (69%)

Query: 69  LKGKHLIEVSDVINDTTQPNLDMNLLTTEI 98
           +KG   ++ +D+++++ QPN+ ++  T E+
Sbjct: 514 VKGCRTVQKADMVHNSLQPNITVDAQTYEV 543



>pdb|1FWJ|C Chain C, Klebsiella Aerogenes Urease, Native
          Length = 567

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 8/30 (26%), Positives = 21/30 (69%)

Query: 69  LKGKHLIEVSDVINDTTQPNLDMNLLTTEI 98
           +KG   ++ +D+++++ QPN+ ++  T E+
Sbjct: 514 VKGCRTVQKADMVHNSLQPNITVDAQTYEV 543



>pdb|1F76|A Chain A, Escherichia Coli Dihydroorotate Dehydrogenase
 pdb|1F76|B Chain B, Escherichia Coli Dihydroorotate Dehydrogenase
 pdb|1F76|D Chain D, Escherichia Coli Dihydroorotate Dehydrogenase
 pdb|1F76|E Chain E, Escherichia Coli Dihydroorotate Dehydrogenase
          Length = 336

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 91  MNLLTTEIARQLRLRSNGRFNITRASGGSGIAA 123
           + L +TEI R+L L  NGR  I    G   + A
Sbjct: 271 LQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIA 303



>pdb|1EJU|C Chain C, Crystal Structure Of The H320n Variant Of Klebsiella
           Aerogenes Urease
          Length = 567

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 8/30 (26%), Positives = 21/30 (69%)

Query: 69  LKGKHLIEVSDVINDTTQPNLDMNLLTTEI 98
           +KG   ++ +D+++++ QPN+ ++  T E+
Sbjct: 514 VKGCRTVQKADMVHNSLQPNITVDAQTYEV 543



>pdb|1FWG|C Chain C, Klebsiella Aerogenes Urease, C319s Variant
          Length = 567

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 8/30 (26%), Positives = 21/30 (69%)

Query: 69  LKGKHLIEVSDVINDTTQPNLDMNLLTTEI 98
           +KG   ++ +D+++++ QPN+ ++  T E+
Sbjct: 514 VKGCRTVQKADMVHNSLQPNITVDAQTYEV 543



>pdb|1EJV|C Chain C, Crystal Structure Of The H320q Variant Of Klebsiella
           Aerogenes Urease
          Length = 567

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 8/30 (26%), Positives = 21/30 (69%)

Query: 69  LKGKHLIEVSDVINDTTQPNLDMNLLTTEI 98
           +KG   ++ +D+++++ QPN+ ++  T E+
Sbjct: 514 VKGCRTVQKADMVHNSLQPNITVDAQTYEV 543



>pdb|1EJS|C Chain C, Crystal Structure Of The H219n Variant Of Klebsiella
           Aerogenes Urease
          Length = 567

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 8/30 (26%), Positives = 21/30 (69%)

Query: 69  LKGKHLIEVSDVINDTTQPNLDMNLLTTEI 98
           +KG   ++ +D+++++ QPN+ ++  T E+
Sbjct: 514 VKGCRTVQKADMVHNSLQPNITVDAQTYEV 543



>pdb|1KRB|C Chain C, Active Site Mutant, Nickel Metalloenzyme Mol_id: 1;
           Molecule: Urease; Chain: A, B, C; Ec: 3.5.1.5; Mutation:
           H(C 219)a; Heterogen: Carbon Dioxide; Heterogen: Nickel
          Length = 567

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 8/30 (26%), Positives = 21/30 (69%)

Query: 69  LKGKHLIEVSDVINDTTQPNLDMNLLTTEI 98
           +KG   ++ +D+++++ QPN+ ++  T E+
Sbjct: 514 VKGCRTVQKADMVHNSLQPNITVDAQTYEV 543



>pdb|1EJR|C Chain C, Crystal Structure Of The D221a Variant Of Klebsiella
           Aerogenes Urease
          Length = 567

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 8/30 (26%), Positives = 21/30 (69%)

Query: 69  LKGKHLIEVSDVINDTTQPNLDMNLLTTEI 98
           +KG   ++ +D+++++ QPN+ ++  T E+
Sbjct: 514 VKGCRTVQKADMVHNSLQPNITVDAQTYEV 543



>pdb|1FWA|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 7.5
 pdb|1FWB|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 6.5
 pdb|1FWC|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 8.5
 pdb|1FWD|C Chain C, Klebsiella Aerogenes Urease, C319a Variant At Ph 9.4
 pdb|1FWE|C Chain C, Klebsiella Aerogenes Urease, C319a Variant With
           Acetohydroxamic Acid (Aha) Bound
          Length = 567

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 8/30 (26%), Positives = 21/30 (69%)

Query: 69  LKGKHLIEVSDVINDTTQPNLDMNLLTTEI 98
           +KG   ++ +D+++++ QPN+ ++  T E+
Sbjct: 514 VKGCRTVQKADMVHNSLQPNITVDAQTYEV 543



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.311    0.125    0.330 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,011,804
Number of Sequences: 13198
Number of extensions: 34249
Number of successful extensions: 86
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 25
length of query: 210
length of database: 2,899,336
effective HSP length: 84
effective length of query: 126
effective length of database: 1,790,704
effective search space: 225628704
effective search space used: 225628704
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)