BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646067|ref|NP_208249.1| thioredoxin [Helicobacter
pylori 26695]
(104 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From... 63 4e-12
pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M Fro... 63 4e-12
pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr,... 60 4e-11
pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H F... 60 4e-11
pdb|1XOB| Thioredoxin (Reduced Dithio Form), Nmr, 20 Stru... 60 4e-11
pdb|2TIR| Thioredoxin Mutant With Lys 36 Replaced By Glu ... 59 6e-11
pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin 59 8e-11
pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredo... 59 8e-11
pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The ... 59 1e-10
pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredox... 58 2e-10
pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between ... 56 5e-10
pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin F... 56 5e-10
pdb|1THO| Thioredoxin Mutant With Arg Inserted Between Gl... 55 9e-10
pdb|1ERV| Human Thioredoxin Mutant With Cys 73 Replaced B... 54 2e-09
pdb|1TRS| Thioredoxin Mutant With Cys 62 Replaced By Ala,... 54 3e-09
pdb|1SRX| Three-Dimensional Structure Of Escherichia Coli... 54 3e-09
pdb|1ERT| Human Thioredoxin (Reduced Form) >gi|2982059|pd... 53 4e-09
pdb|3TRX| Thioredoxin (Reduced Form) >gi|231098|pdb|4TRX|... 52 8e-09
pdb|1AIU| Human Thioredoxin (D60n Mutant, Reduced Form) 51 2e-08
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure ... 50 3e-08
pdb|1ERW| Human Thioredoxin Double Mutant With Cys 32 Rep... 45 9e-07
pdb|1MEK| Human Protein Disulfide Isomerase, Nmr, 40 Stru... 45 9e-07
pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From... 42 1e-05
pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From... 42 1e-05
pdb|1THX| Thioredoxin-2 41 2e-05
pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii >gi|142783... 34 0.003
pdb|1QGV|A Chain A, Human Spliceosomal Protein U5-15kd 33 0.005
pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Trypar... 30 0.031
pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxi... 30 0.031
pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata 30 0.031
pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathi... 30 0.040
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain... 30 0.053
pdb|1KNG|A Chain A, Crystal Structure Of Ccmg Reducing Oxid... 28 0.15
pdb|1EI3|A Chain A, Crystal Structure Of Native Chicken Fib... 25 0.99
pdb|1JDI|A Chain A, Crystal Structure Of L-Ribulose-5-Phosp... 24 2.9
pdb|2ALR| Aldehyde Reductase 23 3.8
pdb|1BED| Structure Of Disulfide Oxidoreductase 23 3.8
pdb|1BG1|A Chain A, Three-Dimensional Structure Of The Stat... 23 4.9
pdb|1QFX|B Chain B, Ph 2.5 Acid Phosphatase From Aspergillu... 23 4.9
pdb|1HUS| Ribosomal Protein S7 23 4.9
pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Intera... 23 6.4
pdb|1GZS|B Chain B, Crystal Structure Of The Complex Betwee... 23 6.4
pdb|1CWN| Crystal Structure Of Porcine Aldehyde Reductase... 23 6.4
pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Intera... 23 6.4
pdb|1AE4| Aldehyde Reductase Complexed With Cofactor And ... 23 6.4
pdb|1C9W|A Chain A, Cho Reductase With Nadp+ 22 8.4
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
Length = 105
Score = 63.2 bits (152), Expect = 4e-12
Identities = 29/86 (33%), Positives = 51/86 (58%), Gaps = 1/86 (1%)
Query: 19 VVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYK 78
V+V+ A WC C+ I P+++ LAK Y GK+ +K++ DE+ + IR IPT++F+K
Sbjct: 21 VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 80
Query: 79 NAKEVGERLVEPSSQKPIEDALKALL 104
N E E ++ + + D+++ L
Sbjct: 81 NG-ERKESIIGAVPKSTLTDSIEKYL 105
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 63.2 bits (152), Expect = 4e-12
Identities = 29/86 (33%), Positives = 51/86 (58%), Gaps = 1/86 (1%)
Query: 19 VVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYK 78
V+V+ A WC C+ I P+++ LAK Y GK+ +K++ DE+ + IR IPT++F+K
Sbjct: 20 VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFK 79
Query: 79 NAKEVGERLVEPSSQKPIEDALKALL 104
N E E ++ + + D+++ L
Sbjct: 80 NG-ERKESIIGAVPKSTLTDSIEKYL 104
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA| Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 60.1 bits (144), Expect = 4e-11
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 15 AHQAVVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTL 74
A A++V+ A WC C+ I PI++ +A Y+GK+ K++ D++ GIR IPTL
Sbjct: 19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
Query: 75 IFYKNAKEVGERLVEPSSQKPIEDALKALL 104
+ +KN EV V S+ +++ L A L
Sbjct: 79 LLFKNG-EVAATKVGALSKGQLKEFLDANL 107
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF| Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 60.1 bits (144), Expect = 4e-11
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 13 KIAHQAVVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIP 72
K H+ +VV+ A+WC C+ I P+ E L+ Y GKV F KV D + E+ GI +P
Sbjct: 21 KEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMP 80
Query: 73 TLIFYKNAKEVGERLVEPSSQKPIEDALKALL 104
T YK+ + + LV S +D LKAL+
Sbjct: 81 TFHVYKDGVKADD-LVGAS-----QDKLKALV 106
>pdb|1XOB| Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|2TRX|A Chain A, Thioredoxin
pdb|2TRX|B Chain B, Thioredoxin
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
Length = 108
Score = 60.1 bits (144), Expect = 4e-11
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 15 AHQAVVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTL 74
A A++V+ A WC C+ I PI++ +A Y+GK+ K++ D++ GIR IPTL
Sbjct: 19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
Query: 75 IFYKNAKEVGERLVEPSSQKPIEDALKALL 104
+ +KN EV V S+ +++ L A L
Sbjct: 79 LLFKNG-EVAATKVGALSKGQLKEFLDANL 107
>pdb|2TIR| Thioredoxin Mutant With Lys 36 Replaced By Glu (K36e)
Length = 108
Score = 59.3 bits (142), Expect = 6e-11
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 15 AHQAVVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTL 74
A A++V+ A WC C I PI++ +A Y+GK+ K++ D++ GIR IPTL
Sbjct: 19 ADGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
Query: 75 IFYKNAKEVGERLVEPSSQKPIEDALKALL 104
+ +KN EV V S+ +++ L A L
Sbjct: 79 LLFKNG-EVAATKVGALSKGQLKEFLDANL 107
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 58.9 bits (141), Expect = 8e-11
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 15 AHQAVVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTL 74
A A++V+ A WC C+ I PI++ +A Y+GK+ K++ D++ GIR IPTL
Sbjct: 19 ADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
Query: 75 IFYKNAKEVGERLVEPSSQKPIEDALKALL 104
+ +KN EV V S+ +++ L A L
Sbjct: 79 LLFKNG-EVAATKVGALSKGQLKEFLDANL 107
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 58.9 bits (141), Expect = 8e-11
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 13 KIAHQAVVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIP 72
K H+ +VV A+WC C+ I P+ E L+ Y GKV F KV D + E+ GI +P
Sbjct: 21 KEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMP 80
Query: 73 TLIFYKNAKEVGERLVEPSSQKPIEDALKALL 104
T YK+ + + LV S +D LKAL+
Sbjct: 81 TFHVYKDGVKADD-LVGAS-----QDKLKALV 106
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 58.5 bits (140), Expect = 1e-10
Identities = 32/86 (37%), Positives = 50/86 (57%), Gaps = 2/86 (2%)
Query: 19 VVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYK 78
VVV+ A+WC C+ I+P +L++ Y + F +V D++QD+ GIR IPTL+ +K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVDDAQDVAPKYGIRGIPTLLLFK 81
Query: 79 NAKEVGERLVEPSSQKPIEDALKALL 104
N EV V S+ +++ L A L
Sbjct: 82 NG-EVAATKVGALSKGQLKEFLDANL 106
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 57.8 bits (138), Expect = 2e-10
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 19 VVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYK 78
V+V+ A WC CR I P+++ +A YK K++ K++ DES ++ GIR IPT++ +K
Sbjct: 22 VLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFK 81
Query: 79 NAKE 82
K+
Sbjct: 82 GGKK 85
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 56.2 bits (134), Expect = 5e-10
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 15 AHQAVVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTL 74
A A++V+ A WC + I PI++ +A Y+GK+ K++ D++ GIR IPTL
Sbjct: 19 ADGAILVDFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTL 78
Query: 75 IFYKNAKEVGERLVEPSSQKPIEDALKALL 104
+ +KN EV V S+ +++ L A L
Sbjct: 79 LLFKNG-EVAATKVGALSKGQLKEFLDANL 107
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 56.2 bits (134), Expect = 5e-10
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 19 VVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYK 78
V+V+ A+WC CR + P++E A+ + KV K++ DE+ + GI IPTLI +K
Sbjct: 20 VLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFK 79
Query: 79 NAKEVGERLVEPSSQKPIEDALKALL 104
+ V ++L+ ++ +E L +L
Sbjct: 80 GGRPV-KQLIGYQPKEQLEAQLADVL 104
>pdb|1THO| Thioredoxin Mutant With Arg Inserted Between Gly 33 And Pro 34
(33r34)
Length = 109
Score = 55.5 bits (132), Expect = 9e-10
Identities = 32/91 (35%), Positives = 51/91 (55%), Gaps = 2/91 (2%)
Query: 15 AHQAVVVNVGASWCP-DCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPT 73
A A++V+ A WC C+ I PI++ +A Y+GK+ K++ D++ GIR IPT
Sbjct: 19 ADGAILVDFWAEWCGRPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPT 78
Query: 74 LIFYKNAKEVGERLVEPSSQKPIEDALKALL 104
L+ +KN EV V S+ +++ L A L
Sbjct: 79 LLLFKNG-EVAATKVGALSKGQLKEFLDANL 108
>pdb|1ERV| Human Thioredoxin Mutant With Cys 73 Replaced By Ser (Reduced
Form)
Length = 105
Score = 54.3 bits (129), Expect = 2e-09
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 19 VVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYK 78
VVV+ A+WC C+ I+P +L++ Y + F +V D+ QD+ ++ +PT F+K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVDDCQDVASECEVKSMPTFQFFK 81
Query: 79 NAKEVGE 85
++VGE
Sbjct: 82 KGQKVGE 88
>pdb|1TRS| Thioredoxin Mutant With Cys 62 Replaced By Ala, Cys 69 Replaced
By Ala, Cys 73 Replaced By Ala (C62a,C69a,C73a)
(Oxidized) (Nmr, Minimized Average Structure)
pdb|1TRU| Thioredoxin Mutant With Cys 62 Replaced By Ala, Cys 69 Replaced
By Ala, Cys 73 Replaced By Ala (C62a,C69a,C73a)
(Oxidized) (Nmr, 40 Structures)
pdb|1TRV| Thioredoxin Mutant With Cys 62 Replaced By Ala, Cys 69 Replaced
By Ala, Cys 73 Replaced By Ala (C62a,C69a,C73a)
(Reduced) (Nmr, 40 Structures)
pdb|1TRW| Thioredoxin Mutant With Cys 62 Replaced By Ala, Cys 69 Replaced
By Ala, Cys 73 Replaced By Ala (C62a,C69a,C73a)
(Reduced) (Nmr, Minimized Average Structure)
Length = 105
Score = 53.9 bits (128), Expect = 3e-09
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 19 VVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYK 78
VVV+ A+WC C+ I+P +L++ Y + F +V D++QD+ ++ PT F+K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKYSNVI-FLEVDVDDAQDVASEAEVKATPTFQFFK 81
Query: 79 NAKEVGE 85
++VGE
Sbjct: 82 KGQKVGE 88
>pdb|1SRX| Three-Dimensional Structure Of Escherichia Coli Thioredoxin- S2 To
2.8 Angstroms Resolution
Length = 108
Score = 53.5 bits (127), Expect = 3e-09
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 15 AHQAVVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTL 74
A A++V+ A WC C+ I PI++ +A Y+GK+ K++ D++ R IPTL
Sbjct: 19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYIERGIPTL 78
Query: 75 IFYKNAKEVGERLVEPSSQKPIEDALKALL 104
+ +KN EV V S+ +++ L A L
Sbjct: 79 LLFKNG-EVAATKVGALSKGQLKEFLDANL 107
>pdb|1ERT| Human Thioredoxin (Reduced Form)
pdb|1AUC| Human Thioredoxin (Oxidized With Diamide)
pdb|1ERU| Human Thioredoxin (Oxidized Form)
Length = 105
Score = 53.1 bits (126), Expect = 4e-09
Identities = 24/67 (35%), Positives = 40/67 (58%), Gaps = 1/67 (1%)
Query: 19 VVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYK 78
VVV+ A+WC C+ I+P +L++ Y V F +V D+ QD+ ++ +PT F+K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDDCQDVASECEVKCMPTFQFFK 81
Query: 79 NAKEVGE 85
++VGE
Sbjct: 82 KGQKVGE 88
>pdb|3TRX| Thioredoxin (Reduced Form)
pdb|4TRX| Thioredoxin (Reduced Form)
Length = 105
Score = 52.4 bits (124), Expect = 8e-09
Identities = 24/67 (35%), Positives = 39/67 (57%), Gaps = 1/67 (1%)
Query: 19 VVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYK 78
VVV+ A+WC C+ I+P +L++ Y V F +V D+ QD+ ++ PT F+K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVDDCQDVASECEVKCTPTFQFFK 81
Query: 79 NAKEVGE 85
++VGE
Sbjct: 82 KGQKVGE 88
>pdb|1AIU| Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 51.2 bits (121), Expect = 2e-08
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 19 VVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYK 78
VVV+ A+WC C+ I+P +L++ Y V F +V ++ QD+ ++ +PT F+K
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVNDCQDVASECEVKCMPTFQFFK 81
Query: 79 NAKEVGE 85
++VGE
Sbjct: 82 KGQKVGE 88
>pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Ref-1 (Residues 59
- 71 Of The P50 Subunit Of Nfkb), Nmr, 31 Structures
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Ref-1 (Residues 59
- 71 Of The P50 Subunit Of Nfkb), Nmr, Minimized
Average Structure
pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Mutant Human Thioredoxin
And A 13 Residue Peptide Comprising Its Target Site In
Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Nfkb (Residues
56-68 Of The P50 Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Nfkb (Residues
56-68 Of The P50 Subunit Of Nfkb)
Length = 105
Score = 50.4 bits (119), Expect = 3e-08
Identities = 22/67 (32%), Positives = 39/67 (57%), Gaps = 1/67 (1%)
Query: 19 VVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYK 78
VVV+ A+WC + I+P +L++ Y + F +V D++QD+ ++ PT F+K
Sbjct: 23 VVVDFSATWCGPAKMIKPFFHSLSEKYSNVI-FLEVDVDDAQDVASEAEVKATPTFQFFK 81
Query: 79 NAKEVGE 85
++VGE
Sbjct: 82 KGQKVGE 88
>pdb|1ERW| Human Thioredoxin Double Mutant With Cys 32 Replaced By Ser And
Cys 35 Replaced By Ser
Length = 105
Score = 45.4 bits (106), Expect = 9e-07
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 19 VVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYK 78
VVV+ A+W + I+P +L++ Y + F +V D+ QD+ ++ +PT F+K
Sbjct: 23 VVVDFSATWSGPSKMIKPFFHSLSEKYSNVI-FLEVDVDDCQDVASECEVKCMPTFQFFK 81
Query: 79 NAKEVGE 85
++VGE
Sbjct: 82 KGQKVGE 88
>pdb|1MEK| Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 45.4 bits (106), Expect = 9e-07
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 4 MINGKNYAEKIA-HQAVVVNVGASWCPDCRKIEPIMENLAKTYKGK---VEFFKVSFDES 59
++ N+AE +A H+ ++V A WC C+ + P A K + + KV E
Sbjct: 11 VLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE 70
Query: 60 QDLKESLGIRKIPTLIFYKN 79
DL + G+R PT+ F++N
Sbjct: 71 SDLAQQYGVRGYPTIKFFRN 90
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 42.0 bits (97), Expect = 1e-05
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 19 VVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFD-ESQDLKESLGIRKIPTLIFY 77
VV+++ WC C+ + P E LA+ Y + F K+ + E++ L + LGIR +PT
Sbjct: 28 VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVI-FLKLDCNQENKTLAKELGIRVVPTFKIL 86
Query: 78 KNAKEVGE 85
K VGE
Sbjct: 87 KENSVVGE 94
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 42.0 bits (97), Expect = 1e-05
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 19 VVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFD-ESQDLKESLGIRKIPTLIFY 77
VV+++ WC C+ + P E LA+ Y + F K+ + E++ L + LGIR +PT
Sbjct: 40 VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVI-FLKLDCNQENKTLAKELGIRVVPTFKIL 98
Query: 78 KNAKEVGE 85
K VGE
Sbjct: 99 KENSVVGE 106
>pdb|1THX| Thioredoxin-2
Length = 115
Score = 41.2 bits (95), Expect = 2e-05
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 15 AHQAVVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTL 74
A Q V+V ASWC C+ + P++ A TY +++ K+ D + + + +P L
Sbjct: 24 AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPAL 83
Query: 75 IFYKNAKEVGERLVEPSSQKPIEDALKALL 104
K GE++++ + +D L + L
Sbjct: 84 RLVK-----GEQILDSTEGVISKDKLLSFL 108
>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii
pdb|1FG4|B Chain B, Structure Of Tryparedoxin Ii
Length = 149
Score = 33.9 bits (76), Expect = 0.003
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 14 IAHQAVVVNVGASWCPDCRKIEPIMENLAKTY--KGKVEFFKVSFDES-QDLKE 64
+A + V ASWCP CR P + + K + K E +S+DES +D K+
Sbjct: 26 LAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKD 79
>pdb|1QGV|A Chain A, Human Spliceosomal Protein U5-15kd
Length = 142
Score = 33.1 bits (74), Expect = 0.005
Identities = 15/67 (22%), Positives = 31/67 (45%)
Query: 17 QAVVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIF 76
+ VV+ G W P C K++ ++ ++A+ K + V E D + + T++F
Sbjct: 24 RVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMF 83
Query: 77 YKNAKEV 83
+ K +
Sbjct: 84 FFRNKHI 90
>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I
Length = 153
Score = 30.4 bits (67), Expect = 0.031
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 6 NGKNYAEKIAHQAVVVNVGASWCPDCRKIEP-IMENLAKTYKGK-VEFFKVSFDESQD 61
+G+ + +A + V ASWCP CR P ++E K ++ K E ++DE +D
Sbjct: 17 DGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEVVFCTWDEEED 74
>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From
Crithidia Fasciculata
Length = 146
Score = 30.4 bits (67), Expect = 0.031
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 6 NGKNYAEKIAHQAVVVNVGASWCPDCRKIEP-IMENLAKTYKGK-VEFFKVSFDESQD 61
+G+ + +A + V ASWCP CR P ++E K ++ K E ++DE +D
Sbjct: 18 DGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEVVFCTWDEEED 75
>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata
Length = 146
Score = 30.4 bits (67), Expect = 0.031
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 6 NGKNYAEKIAHQAVVVNVGASWCPDCRKIEP-IMENLAKTYKGK-VEFFKVSFDESQD 61
+G+ + +A + V ASWCP CR P ++E K ++ K E ++DE +D
Sbjct: 18 DGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEVVFCTWDEEED 75
>pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine
Length = 144
Score = 30.0 bits (66), Expect = 0.040
Identities = 18/54 (33%), Positives = 27/54 (49%), Gaps = 3/54 (5%)
Query: 14 IAHQAVVVNVGASWCPDCRKIEPIMENLAKTY--KGKVEFFKVSFDES-QDLKE 64
+A + V ASWCP R P + + K + K E +S+DES +D K+
Sbjct: 26 LAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKD 79
>pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 29.6 bits (65), Expect = 0.053
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 17 QAVVVNVGASWCPDCRKIEPIMENLAKTYKG-KVEFFKVSFDESQD------LKES---- 65
+ ++VN+ A+WC CRK P ++ L G E ++ D LKE+
Sbjct: 61 KTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTR 120
Query: 66 LGIRKIPTLIFYKNAKEVGERLVEPSS 92
LG +++ K +G L P+S
Sbjct: 121 LGYFNDQKAKVFQDLKAIGRALGMPTS 147
>pdb|1KNG|A Chain A, Crystal Structure Of Ccmg Reducing Oxidoreductase At
1.14 A
Length = 156
Score = 28.1 bits (61), Expect = 0.15
Identities = 11/24 (45%), Positives = 14/24 (57%)
Query: 20 VVNVGASWCPDCRKIEPIMENLAK 43
+VNV ASWC C P++ L K
Sbjct: 46 LVNVWASWCVPCHDEAPLLTELGK 69
>pdb|1EI3|A Chain A, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|D Chain D, Crystal Structure Of Native Chicken Fibrinogen
Length = 491
Score = 25.4 bits (54), Expect = 0.99
Identities = 12/62 (19%), Positives = 31/62 (49%)
Query: 28 CPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYKNAKEVGERL 87
CP C +++ I+++ + Y +++ + +SQ+ ++ + T+ K E ++L
Sbjct: 46 CPSCCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQL 105
Query: 88 VE 89
E
Sbjct: 106 DE 107
>pdb|1JDI|A Chain A, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|B Chain B, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|C Chain C, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|D Chain D, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|E Chain E, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
pdb|1JDI|F Chain F, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
Length = 231
Score = 23.9 bits (50), Expect = 2.9
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 7 GKNYAEKIAHQAVVVNVGASWCPDCRKIEPIMENLAKTYKGK 48
GKN AE H A+V+ A CR++ P + ++ +T K
Sbjct: 177 GKN-AEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLNK 217
>pdb|2ALR| Aldehyde Reductase
Length = 324
Score = 23.5 bits (49), Expect = 3.8
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 65 SLGIRKIPTLIFYKNAKEVGERLVE---PSSQKPIED 98
S+G R I Y N E+GE L E P P E+
Sbjct: 37 SVGYRHIDCAAIYGNEPEIGEALKEDVGPGKAVPREE 73
>pdb|1BED| Structure Of Disulfide Oxidoreductase
Length = 181
Score = 23.5 bits (49), Expect = 3.8
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 19 VVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFK--VSF 56
VV + +CP C EPI+ L + +F K VSF
Sbjct: 21 VVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSF 60
>pdb|1BG1|A Chain A, Three-Dimensional Structure Of The Stat3b Homodimer
Bound To Dna
Length = 722
Score = 23.1 bits (48), Expect = 4.9
Identities = 13/57 (22%), Positives = 27/57 (46%)
Query: 30 DCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYKNAKEVGER 86
D R +E + + + T+ ++ F + ESQD + TL+F+ E+ ++
Sbjct: 11 DTRYLEQLHQLYSDTFPMELRQFLAPWIESQDWAYAASKESHATLVFHNLLGEIDQQ 67
>pdb|1QFX|B Chain B, Ph 2.5 Acid Phosphatase From Aspergillus Niger
pdb|1QFX|A Chain A, Ph 2.5 Acid Phosphatase From Aspergillus Niger
Length = 460
Score = 23.1 bits (48), Expect = 4.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 81 KEVGERLVEPSSQKPIEDAL 100
K GER PS+ K IE+AL
Sbjct: 61 KRHGERYPSPSAGKDIEEAL 80
>pdb|1HUS| Ribosomal Protein S7
Length = 155
Score = 23.1 bits (48), Expect = 4.9
Identities = 15/56 (26%), Positives = 27/56 (47%), Gaps = 2/56 (3%)
Query: 32 RKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYKNAKEVGERL 87
+ + P++E A+ G ++V + D + SLG+R + +N K ERL
Sbjct: 66 KNVXPVLEVRARRVGGAN--YQVPVEVRPDRRVSLGLRWLVQYARLRNEKTXEERL 119
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 22.7 bits (47), Expect = 6.4
Identities = 17/59 (28%), Positives = 24/59 (39%), Gaps = 2/59 (3%)
Query: 27 WCPDCRKIEPIME--NLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYKNAKEV 83
W P+ K E N+ + G EF + D+ + + KIPTLI EV
Sbjct: 188 WPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAIKIPTLITVGEYDEV 246
>pdb|1GZS|B Chain B, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|D Chain D, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 165
Score = 22.7 bits (47), Expect = 6.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 8 KNYAEKIAHQAVVVNVGASWCPDCRKIEPIMENLAKTY 45
K YAEKI V P ++ + I+EN+A Y
Sbjct: 123 KIYAEKIIMTEVAPLFNECAMPTPQQFQLILENIANKY 160
>pdb|1CWN| Crystal Structure Of Porcine Aldehyde Reductase Holoenzyme
Length = 324
Score = 22.7 bits (47), Expect = 6.4
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 65 SLGIRKIPTLIFYKNAKEVGERLVE---PSSQKPIED 98
++G R I Y N E+GE L E P P E+
Sbjct: 37 TVGYRHIDCAAIYGNELEIGEALTETVGPGKAVPREE 73
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-F1
Length = 293
Score = 22.7 bits (47), Expect = 6.4
Identities = 17/59 (28%), Positives = 24/59 (39%), Gaps = 2/59 (3%)
Query: 27 WCPDCRKIEPIME--NLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYKNAKEV 83
W P+ K E N+ + G EF + D+ + + KIPTLI EV
Sbjct: 188 WPPEVLKSLEYAERRNVYRIXNGPNEFTITGTIKDWDITDKISAIKIPTLITVGEYDEV 246
>pdb|1AE4| Aldehyde Reductase Complexed With Cofactor And Inhibitor, Alpha
Carbon Atoms Only
Length = 325
Score = 22.7 bits (47), Expect = 6.4
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 65 SLGIRKIPTLIFYKNAKEVGERLVE---PSSQKPIED 98
++G R I Y N E+GE L E P P E+
Sbjct: 38 TVGYRHIDCAAIYGNELEIGEALTETVGPGKAVPREE 74
>pdb|1C9W|A Chain A, Cho Reductase With Nadp+
Length = 315
Score = 22.3 bits (46), Expect = 8.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 67 GIRKIPTLIFYKNAKEVGERLVEPSSQKPI 96
G R I Y N EVGE + E +K +
Sbjct: 38 GYRHIDCAYAYYNEHEVGEAIQEKIKEKAV 67
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.133 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 585,881
Number of Sequences: 13198
Number of extensions: 21450
Number of successful extensions: 87
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 46
length of query: 104
length of database: 2,899,336
effective HSP length: 80
effective length of query: 24
effective length of database: 1,843,496
effective search space: 44243904
effective search space used: 44243904
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)