BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646068|ref|NP_208250.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(262 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DM5|A Chain A, Annexin Xii E105k Homohexamer Crystal S... 27 1.8
pdb|1AEI|A Chain A, Crystal Structure Of The Annexin Xii He... 27 1.8
pdb|1IPA|A Chain A, Crystal Structure Of Rna 2'-O Ribose Me... 27 3.1
pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein... 26 5.3
pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehy... 25 9.1
>pdb|1DM5|A Chain A, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|B Chain B, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|C Chain C, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|D Chain D, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|E Chain E, Annexin Xii E105k Homohexamer Crystal Structure
pdb|1DM5|F Chain F, Annexin Xii E105k Homohexamer Crystal Structure
Length = 315
Score = 27.3 bits (59), Expect = 1.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 121 KAVVSALMHADLEKEYLIKIQGFVTREMENAMQEGLKLENATKGAH 166
KA L DLEKE + + G R + + +Q G K + AH
Sbjct: 123 KAAFKLLYKEDLEKEIISETSGNFQRLLVSMLQGGRKEDEPVNAAH 168
>pdb|1AEI|A Chain A, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|B Chain B, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|C Chain C, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|D Chain D, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|E Chain E, Crystal Structure Of The Annexin Xii Hexamer
pdb|1AEI|F Chain F, Crystal Structure Of The Annexin Xii Hexamer
Length = 315
Score = 27.3 bits (59), Expect = 1.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 121 KAVVSALMHADLEKEYLIKIQGFVTREMENAMQEGLKLENATKGAH 166
KA L DLEKE + + G R + + +Q G K + AH
Sbjct: 123 KAAFKLLYKEDLEKEIISETSGNFQRLLVSMLQGGRKEDEPVNAAH 168
>pdb|1IPA|A Chain A, Crystal Structure Of Rna 2'-O Ribose Methyltransferase
Length = 274
Score = 26.6 bits (57), Expect = 3.1
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Query: 129 HADLEKEYLIKIQGFVTREMENAMQEGLKLENA 161
H D ++ +LI+ RE+E A+Q G++LE A
Sbjct: 22 HRDSQRRFLIE----GAREIERALQAGIELEQA 50
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 25.8 bits (55), Expect = 5.3
Identities = 19/56 (33%), Positives = 28/56 (49%), Gaps = 3/56 (5%)
Query: 31 RVKINHEHAKLASVVKENDRVFLDKRLIKPLKNKKFSVLVYHKPKGELVSKADPLK 86
+ KIN + V EN+R + L + LKNK+F LV+ K K + A L+
Sbjct: 207 KAKINANIEQSYVEVNENERF---EALCRLLKNKEFYGLVFCKTKRDTKELASXLR 259
>pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 25.0 bits (53), Expect = 9.1
Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 28/130 (21%)
Query: 3 GFSLR--INQFLAHYTKHSRREAEKLVLEGRVKINHEHAKLASVVKE------------- 47
G+SL Q LA+Y + E +V V+ ++ ++ +V+KE
Sbjct: 258 GYSLPKDTKQLLANYNNIPQTLIEAIVSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRL 317
Query: 48 -------NDRVFLDKRLIKPLKNKKFSVLVYHKPKGELVSKADPLKRRVIYESLE--KKY 98
N R K +I LK+K +++Y +++K + + V+ LE KK
Sbjct: 318 IMKSNSDNFRESAIKDVIDILKSKDIKIIIYE----PMLNKLESEDQSVLVNDLENFKKQ 373
Query: 99 AHFAPVGRLD 108
A+ R D
Sbjct: 374 ANIIVTNRYD 383
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.137 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,350,710
Number of Sequences: 13198
Number of extensions: 53021
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 5
length of query: 262
length of database: 2,899,336
effective HSP length: 86
effective length of query: 176
effective length of database: 1,764,308
effective search space: 310518208
effective search space used: 310518208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)