BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644777|ref|NP_206947.1| hypothetical protein
[Helicobacter pylori 26695]
         (68 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1DBO|A  Chain A, Crystal Structure Of Chondroitinase B >...    26  0.96
pdb|1LLQ|A  Chain A, Crystal Structure Of Malic Enzyme From ...    23  8.1

>pdb|1DBO|A Chain A, Crystal Structure Of Chondroitinase B
 pdb|1DBG|A Chain A, Crystal Structure Of Chondroitinase B
          Length = 506

 Score = 25.8 bits (55), Expect = 0.96
 Identities = 13/21 (61%), Positives = 16/21 (75%)

Query: 1  MKFLNGLAGNLLIVVILLCVA 21
          MK LN LAG LL +++LL VA
Sbjct: 1  MKMLNKLAGYLLPIMVLLNVA 21



>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
           Complexed With Nicotinamide Adenine Dinucleotide
 pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
           Complexed With Nicotinamide Adenine Dinucleotide
          Length = 605

 Score = 22.7 bits (47), Expect = 8.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 31  IQKEQATNYYRYKDINALETKN 52
           I KE+A N     DI+ L TKN
Sbjct: 348 ISKEEACNRIYLMDIDGLVTKN 369



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.322    0.136    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 338,623
Number of Sequences: 13198
Number of extensions: 10018
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 2
length of query: 68
length of database: 2,899,336
effective HSP length: 44
effective length of query: 24
effective length of database: 2,318,624
effective search space: 55646976
effective search space used: 55646976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)