BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646072|ref|NP_208254.1| hypothetical protein
[Helicobacter pylori 26695]
(225 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BLJ| Nmr Ensemble Of Blk Sh2 Domain, 20 Structures >... 27 2.5
pdb|1A3Y|B Chain B, Odorant Binding Protein From Nasal Muco... 25 5.6
pdb|1DZP|A Chain A, Porcine Odorant Binding Protein Complex... 25 5.6
pdb|1F6N|L Chain L, Crystal Structure Analysis Of The Mutan... 25 5.6
pdb|1A3Y|A Chain A, Odorant Binding Protein From Nasal Muco... 25 5.6
pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agal... 25 9.5
>pdb|1BLJ| Nmr Ensemble Of Blk Sh2 Domain, 20 Structures
pdb|1BLK| Nmr Ensemble Of Blk Sh2 Domain Using Chemical Shift Refinement, 20
Structures
Length = 114
Score = 26.6 bits (57), Expect = 2.5
Identities = 15/42 (35%), Positives = 24/42 (56%), Gaps = 4/42 (9%)
Query: 134 SLLEKENSTYRAEFALGYDISVKGDSHSGVIIKHENISSLEN 175
S L +E+ + + F+L SVK + G ++KH I SL+N
Sbjct: 37 SFLIRESESNKGAFSL----SVKDITTQGEVVKHYKIRSLDN 74
>pdb|1A3Y|B Chain B, Odorant Binding Protein From Nasal Mucosa Of Pig
Length = 149
Score = 25.4 bits (54), Expect = 5.6
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 133 FSLL--EKENSTYRAEFALGYDISVKGDSHSGVIIKHENISSLENKTTKTSKNG-NQDFQ 189
FSL+ ++E +TY +A V S + +II + N+ +KT T G D +
Sbjct: 58 FSLIGTKQEGNTYDVNYAGNNKFVVSYASETALIISNINVDEEGDKTIMTGLLGKGTDIE 117
Query: 190 ESAIQSLQHVS 200
+ ++ + V+
Sbjct: 118 DQDLEKFKEVT 128
>pdb|1DZP|A Chain A, Porcine Odorant Binding Protein Complexed With
Diphenylmethanone
pdb|1E00|A Chain A, Porcine Odorant Binding Protein Complexed With
2,6-Dimethyl-7-Octen-2-Ol
pdb|1DZM|A Chain A, Porcine Odorant Binding Protein Complexed With Benzoic
Acid Phenylmethylester
pdb|1E06|A Chain A, Porcine Odorant Binding Protein Complexed With
5-Methyl-2-(1-Methylethyl)phenol
pdb|1E02|A Chain A, Porcine Odorant Binding Protein Complexed With Undecanal
pdb|1HQP|A Chain A, Crystal Structure Of A Truncated Form Of Porcine Odorant-
Binding Protein
pdb|1DZK|A Chain A, Porcine Odorant Binding Protein Complexed With Pyrazine
(2-Isobutyl-3-Metoxypyrazine)
pdb|1DZK|B Chain B, Porcine Odorant Binding Protein Complexed With Pyrazine
(2-Isobutyl-3-Metoxypyrazine)
pdb|1E00|B Chain B, Porcine Odorant Binding Protein Complexed With
2,6-Dimethyl-7-Octen-2-Ol
pdb|1DZJ|A Chain A, Porcine Odorant Binding Protein Complexed With
2-Amino-4-Butyl-5-Propylselenazole
pdb|1DZJ|B Chain B, Porcine Odorant Binding Protein Complexed With
2-Amino-4-Butyl-5-Propylselenazole
pdb|1DZP|B Chain B, Porcine Odorant Binding Protein Complexed With
Diphenylmethanone
pdb|1DZM|B Chain B, Porcine Odorant Binding Protein Complexed With Benzoic
Acid Phenylmethylester
pdb|1E06|B Chain B, Porcine Odorant Binding Protein Complexed With
5-Methyl-2-(1-Methylethyl)phenol
pdb|1E02|B Chain B, Porcine Odorant Binding Protein Complexed With Undecanal
Length = 157
Score = 25.4 bits (54), Expect = 5.6
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 133 FSLL--EKENSTYRAEFALGYDISVKGDSHSGVIIKHENISSLENKTTKTSKNG-NQDFQ 189
FSL+ ++E +TY +A V S + +II + N+ +KT T G D +
Sbjct: 66 FSLIGTKQEGNTYDVNYAGNNKFVVSYASETALIISNINVDEEGDKTIMTGLLGKGTDIE 125
Query: 190 ESAIQSLQHVS 200
+ ++ + V+
Sbjct: 126 DQDLEKFKEVT 136
>pdb|1F6N|L Chain L, Crystal Structure Analysis Of The Mutant Reaction Center
Pro L209-> Tyr From The Photosynthetic Purple Bacterium
Rhodobacter Sphaeroides
Length = 281
Score = 25.4 bits (54), Expect = 5.6
Identities = 14/32 (43%), Positives = 20/32 (61%), Gaps = 2/32 (6%)
Query: 9 FSLSSALALLLHGCLSINL--KQMLPEIRTYD 38
F ++ALAL LHG L ++ + E+RTYD
Sbjct: 179 FFFTNALALALHGALVLSAANPEKGKEMRTYD 210
>pdb|1A3Y|A Chain A, Odorant Binding Protein From Nasal Mucosa Of Pig
Length = 149
Score = 25.4 bits (54), Expect = 5.6
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 133 FSLL--EKENSTYRAEFALGYDISVKGDSHSGVIIKHENISSLENKTTKTSKNG-NQDFQ 189
FSL+ ++E +TY +A V S + +II + N+ +KT T G D +
Sbjct: 58 FSLIGTKQEGNTYDVNYAGNNKFVVSYASETALIISNINVDEEGDKTIMTGLLGKGTDIE 117
Query: 190 ESAIQSLQHVS 200
+ ++ + V+
Sbjct: 118 DQDLEKFKEVT 128
>pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Hexasaccharide Unit Of Hyaluronan
pdb|1I8Q|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Enzyme Product, Unsaturated
Disaccharide Hyaluronan
pdb|1F1S|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase At 2.1 Angstrom Resolution
Length = 814
Score = 24.6 bits (52), Expect = 9.5
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 132 SFSLLEKENSTYRAEFALGYDISVKGDSHSGVIIKHENISSLENKTTKTSKNG 184
SF L E + + +S + +IKH+N SL N K +K G
Sbjct: 733 SFDKLANSKEVELLENSSKQQVIYDKNSQTWAVIKHDNQESLINNQFKMNKAG 785
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.130 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,112,376
Number of Sequences: 13198
Number of extensions: 40285
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 6
length of query: 225
length of database: 2,899,336
effective HSP length: 85
effective length of query: 140
effective length of database: 1,777,506
effective search space: 248850840
effective search space used: 248850840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)