BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646073|ref|NP_208255.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(271 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IO1|A Chain A, Crystal Structure Of F41 Fragment Of Fl... 29 0.50
pdb|1JZS|A Chain A, Isoleucyl-Trna Synthetase Complexed Wit... 27 1.9
pdb|1BQB|A Chain A, Aureolysin, Staphylococcus Aureus Metal... 27 2.5
pdb|1NKS|A Chain A, Adenylate Kinase From Sulfolobus Acidoc... 27 2.5
pdb|1HGX|A Chain A, Hypoxanthine-Guanine-Xanthine Phosphori... 27 3.2
pdb|1IG0|B Chain B, Crystal Structure Of Yeast Thiamin Pyro... 26 4.2
pdb|1GW5|B Chain B, Ap2 Clathrin Adaptor Core 26 5.5
pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritim... 25 7.2
>pdb|1IO1|A Chain A, Crystal Structure Of F41 Fragment Of Flagellin
Length = 398
Score = 29.3 bits (64), Expect = 0.50
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 170 VEKFKHILASVDDLIANLDSRKTQFDSLISNANNLVSNVNN 210
++K LA VD L ++L + + +F+S I+N N V+N+ +
Sbjct: 356 LQKIDAALAQVDTLRSDLAAVQNRFNSAITNLGNTVNNLTS 396
>pdb|1JZS|A Chain A, Isoleucyl-Trna Synthetase Complexed With Mupirocin
pdb|1ILE| Isoleucyl-Trna Synthetase
pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
Length = 821
Score = 27.3 bits (59), Expect = 1.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 118 HNEEFYGSGDKGERILIFKEGLMDRLSGDANQVVQ 152
H E Y + G+ LI +EGL +L G+ QV++
Sbjct: 243 HPEYTYAAFQVGDEALILEEGLGRKLLGEGTQVLK 277
>pdb|1BQB|A Chain A, Aureolysin, Staphylococcus Aureus Metalloproteinase
Length = 301
Score = 26.9 bits (58), Expect = 2.5
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 43 VYTDKDLGGIATNSPINYKGIQVGNVIK-VGFAKDK 77
VYT+KD GG+ TNS I K NVI+ +G +K +
Sbjct: 218 VYTEKDNGGVHTNSGIPNKAAY--NVIQAIGKSKSE 251
>pdb|1NKS|A Chain A, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|B Chain B, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|C Chain C, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|D Chain D, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|E Chain E, Adenylate Kinase From Sulfolobus Acidocaldarius
pdb|1NKS|F Chain F, Adenylate Kinase From Sulfolobus Acidocaldarius
Length = 194
Score = 26.9 bits (58), Expect = 2.5
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 55 NSPINYKGIQVGNVIKVGFAKDKVGVVRLDLMIKSSVKIRKDSKVAVSSR 104
N INY + +K+G+AKD+ + +L + + ++I +A +R
Sbjct: 32 NKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEAR 81
>pdb|1HGX|A Chain A, Hypoxanthine-Guanine-Xanthine Phosphoribosyltransferase
(Hgxprtase)
pdb|1HGX|B Chain B, Hypoxanthine-Guanine-Xanthine Phosphoribosyltransferase
(Hgxprtase)
Length = 183
Score = 26.6 bits (57), Expect = 3.2
Identities = 13/31 (41%), Positives = 18/31 (57%)
Query: 46 DKDLGGIATNSPINYKGIQVGNVIKVGFAKD 76
DKD+G A + PI+Y G V N +G+ D
Sbjct: 133 DKDIGKKAYDVPIDYCGFVVENRYIIGYGFD 163
>pdb|1IG0|B Chain B, Crystal Structure Of Yeast Thiamin Pyrophosphokinase
pdb|1IG0|A Chain A, Crystal Structure Of Yeast Thiamin Pyrophosphokinase
Length = 319
Score = 26.2 bits (56), Expect = 4.2
Identities = 20/69 (28%), Positives = 35/69 (49%), Gaps = 2/69 (2%)
Query: 139 LMDRLSGDANQVVQEVMKAIRNVNRILDDENVEKFKHILASVDDLIANLDSRKTQFDSLI 198
L + + GD + + ++V K R N++ + ++ +LI+ L +F SLI
Sbjct: 90 LPNYIIGDLDSLSEKVYKYYRK-NKVTIIKQTTQYSTDFTKCVNLIS-LHFNSPEFRSLI 147
Query: 199 SNANNLVSN 207
SN +NL SN
Sbjct: 148 SNKDNLQSN 156
>pdb|1GW5|B Chain B, Ap2 Clathrin Adaptor Core
Length = 591
Score = 25.8 bits (55), Expect = 5.5
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 139 LMDRLSGDANQVVQEVMKAIRNVNRILDDENVEKFKHILASVDDLIANLD 188
L+D + N VVQE + IR++ R + K++ I+A++ + + +LD
Sbjct: 395 LLDLIQTKVNYVVQEAIVVIRDIFR----KYPNKYESIIATLCENLDSLD 440
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 25.4 bits (54), Expect = 7.2
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 20/76 (26%)
Query: 161 VNRILDDENVEKFKHILASVDDLIANLDSRKTQF-----DSLISNANNL---VSNVNNVA 212
V+ LDD N E+FK +L +S+ TQF + ++ A +L V+ VN V+
Sbjct: 250 VDSPLDDYNAERFKRLLKE--------NSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301
Query: 213 ----LDVDKRLKQGQY 224
++V+K L+ G +
Sbjct: 302 AIVPVEVEKILEVGSH 317
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.141 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,497,980
Number of Sequences: 13198
Number of extensions: 60691
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 8
length of query: 271
length of database: 2,899,336
effective HSP length: 87
effective length of query: 184
effective length of database: 1,751,110
effective search space: 322204240
effective search space used: 322204240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)