BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646076|ref|NP_208258.1| hypothetical protein
[Helicobacter pylori 26695]
(231 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GZ0|A Chain A, 23s Ribosomal Rna G2251 2'o-Methyltrans... 27 2.0
pdb|1A0P| Site-Specific Recombinase, Xerd 27 2.6
pdb|1E6V|B Chain B, Methyl-Coenzyme M Reductase From Methan... 26 4.5
pdb|1QNR|A Chain A, The 3-D Structure Of A Trichoderma Rees... 25 5.8
pdb|1E2W|A Chain A, N168f Mutant Of Cytochrome F From Chlam... 25 7.6
pdb|1KVT| Udp-Galactose 4-Epimerase Complexed With Udp-Ph... 25 9.9
pdb|1KVS| Udp-Galactose 4-Epimerase Complexed With Udp-Ph... 25 9.9
pdb|1KVQ| Udp-Galactose 4-Epimerase Complexed With Udp-Ph... 25 9.9
pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galact... 25 9.9
pdb|1A9Z| Udp-Galactose 4-Epimerase Mutant S124aY149F COM... 25 9.9
pdb|1KVR| Udp-Galactose 4-Epimerase Complexed With Udp-Ph... 25 9.9
pdb|1JQK|A Chain A, Crystal Structure Of Carbon Monoxide De... 25 9.9
pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli U... 25 9.9
pdb|1UDC| Structure Of Udp-Galactose-4-Epimerase Complexe... 25 9.9
pdb|1A9Y| Udp-Galactose 4-Epimerase Mutant S124aY149F COM... 25 9.9
pdb|1KVU| Udp-Galactose 4-Epimerase Complexed With Udp-Ph... 25 9.9
>pdb|1GZ0|A Chain A, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|B Chain B, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|C Chain C, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|D Chain D, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|E Chain E, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|F Chain F, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|G Chain G, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|H Chain H, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
Length = 253
Score = 26.9 bits (58), Expect = 2.0
Identities = 14/42 (33%), Positives = 21/42 (49%)
Query: 47 IINRQKLTRKKSGWYFLGGFGAVEATKDYQGQEMKDWIATLN 88
+ NRQ L K G G V+ + YQ ++ D IA+L+
Sbjct: 62 LANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLD 103
>pdb|1A0P| Site-Specific Recombinase, Xerd
Length = 290
Score = 26.6 bits (57), Expect = 2.6
Identities = 17/42 (40%), Positives = 22/42 (51%), Gaps = 5/42 (11%)
Query: 190 LTLFLRHRIELGFKILPTARLLSSSKRFETSPLFYAAYSYKF 231
L L R+E G+K +ARLLS+ +R LF Y KF
Sbjct: 53 LQALLAERLEGGYKATSSARLLSAVRR-----LFQYLYREKF 89
>pdb|1E6V|B Chain B, Methyl-Coenzyme M Reductase From Methanopyrus Kandleri
pdb|1E6V|E Chain E, Methyl-Coenzyme M Reductase From Methanopyrus Kandleri
Length = 443
Score = 25.8 bits (55), Expect = 4.5
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 154 FGGARGALVVYTDKQNFKFFKHSVVSGGLAINGGVMLTLFLRHRIELGFKILPTARLLS 212
FG A G V F FF HS+ GG G+ + R GF I P A ++
Sbjct: 350 FGRAEGTAV------GFSFFSHSIYGGG---GPGIFHGNHIVTRHSKGFAIPPVAAAMA 399
>pdb|1QNR|A Chain A, The 3-D Structure Of A Trichoderma Reesei B-Mannanase From
Glycoside Hydrolase Family 5
pdb|1QNS|A Chain A, The 3-D Structure Of A Trichoderma Reesei B-Mannanase From
Glycoside Hydrolase Family 5
pdb|1QNP|A Chain A, The 3-D Structure Of A Trichoderma Reesei B-Mannanase From
Glycoside Hydrolase Family 5
pdb|1QNQ|A Chain A, The 3-D Structure Of A Trichoderma Reesei B-Mannanase From
Glycoside Hydrolase Family 5
pdb|1QNO|A Chain A, The 3-D Structure Of A Trichoderma Reesei B-Mannanase From
Glycoside Hydrolase Family 5
Length = 344
Score = 25.4 bits (54), Expect = 5.8
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 66 FGAVEATKDYQGQEMKDWIATLNLKTG----VQSFFKKYIGIRGVFAWDLGS 113
+G + A + G W +T VQ+ +Y +FAW+LG+
Sbjct: 117 YGGINAYVNAFGGNATTWYTNTAAQTQYRKYVQAVVSRYANSTAIFAWELGN 168
>pdb|1E2W|A Chain A, N168f Mutant Of Cytochrome F From Chlamydomonas
Reinhardtii
pdb|1E2W|B Chain B, N168f Mutant Of Cytochrome F From Chlamydomonas
Reinhardtii
Length = 251
Score = 25.0 bits (53), Expect = 7.6
Identities = 17/41 (41%), Positives = 19/41 (45%), Gaps = 2/41 (4%)
Query: 146 SYKHYLGAFGGARGALVVYTD--KQNFKFFKHSVVSGGLAI 184
SY Y FGG RG VY D K NF + S +AI
Sbjct: 142 SYLKYPIYFGGNRGRGQVYPDGKKSNFTIYNASAAGKIVAI 182
>pdb|1KVT| Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 24.6 bits (52), Expect = 9.9
Identities = 20/63 (31%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Query: 66 FGAVEATKDYQGQEMKDWIATLNLKTGVQSFFKKYIGIRGVFAWDLGSGKVNYQSHKDPT 125
FG T+D G ++D+I ++L G +K GV ++LG+G N S D
Sbjct: 218 FGNDYPTED--GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGN--SVLDVV 273
Query: 126 NSF 128
N+F
Sbjct: 274 NAF 276
>pdb|1KVS| Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 24.6 bits (52), Expect = 9.9
Identities = 20/63 (31%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Query: 66 FGAVEATKDYQGQEMKDWIATLNLKTGVQSFFKKYIGIRGVFAWDLGSGKVNYQSHKDPT 125
FG T+D G ++D+I ++L G +K GV ++LG+G N S D
Sbjct: 218 FGNDYPTED--GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGN--SVLDVV 273
Query: 126 NSF 128
N+F
Sbjct: 274 NAF 276
>pdb|1KVQ| Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 24.6 bits (52), Expect = 9.9
Identities = 20/63 (31%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Query: 66 FGAVEATKDYQGQEMKDWIATLNLKTGVQSFFKKYIGIRGVFAWDLGSGKVNYQSHKDPT 125
FG T+D G ++D+I ++L G +K GV ++LG+G N S D
Sbjct: 218 FGNDYPTED--GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGN--SVLDVV 273
Query: 126 NSF 128
N+F
Sbjct: 274 NAF 276
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1UDB| Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4-Fluoro-Alpha-D-Glucose
pdb|1UDA| Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4-Fluoro-Alpha-D-Galactose
pdb|1NAH| Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1XEL| Udp-Galactose 4-Epimerase From Escherichia Coli
pdb|1NAI| Udp-Galactose 4-Epimerase From Escherichia Coli, Oxidized
Length = 338
Score = 24.6 bits (52), Expect = 9.9
Identities = 20/63 (31%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Query: 66 FGAVEATKDYQGQEMKDWIATLNLKTGVQSFFKKYIGIRGVFAWDLGSGKVNYQSHKDPT 125
FG T+D G ++D+I ++L G +K GV ++LG+G N S D
Sbjct: 218 FGNDYPTED--GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGN--SVLDVV 273
Query: 126 NSF 128
N+F
Sbjct: 274 NAF 276
>pdb|1A9Z| Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
Udp-Galactose
Length = 338
Score = 24.6 bits (52), Expect = 9.9
Identities = 20/63 (31%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Query: 66 FGAVEATKDYQGQEMKDWIATLNLKTGVQSFFKKYIGIRGVFAWDLGSGKVNYQSHKDPT 125
FG T+D G ++D+I ++L G +K GV ++LG+G N S D
Sbjct: 218 FGNDYPTED--GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGN--SVLDVV 273
Query: 126 NSF 128
N+F
Sbjct: 274 NAF 276
>pdb|1KVR| Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 24.6 bits (52), Expect = 9.9
Identities = 20/63 (31%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Query: 66 FGAVEATKDYQGQEMKDWIATLNLKTGVQSFFKKYIGIRGVFAWDLGSGKVNYQSHKDPT 125
FG T+D G ++D+I ++L G +K GV ++LG+G N S D
Sbjct: 218 FGNDYPTED--GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGN--SVLDVV 273
Query: 126 NSF 128
N+F
Sbjct: 274 NAF 276
>pdb|1JQK|A Chain A, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
pdb|1JQK|B Chain B, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
pdb|1JQK|C Chain C, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
pdb|1JQK|D Chain D, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
pdb|1JQK|E Chain E, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
pdb|1JQK|F Chain F, Crystal Structure Of Carbon Monoxide Dehydrogenase From
Rhodospirillum Rubrum
Length = 639
Score = 24.6 bits (52), Expect = 9.9
Identities = 17/66 (25%), Positives = 28/66 (41%), Gaps = 3/66 (4%)
Query: 31 TPKKNYQEAHEKLYRSIINRQKL---TRKKSGWYFLGGFGAVEATKDYQGQEMKDWIATL 87
T K A+ L +S+ R L T +G + G EAT Y G+ +K ++ +
Sbjct: 453 TTKVQQDSAYVDLAKSLAKRNVLVLATGCAAGAFAKAGLMTSEATTQYAGEGLKGVLSAI 512
Query: 88 NLKTGV 93
G+
Sbjct: 513 GTAAGL 518
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-
Epimerase Mutant Y299c Complexed With Udp-N-
Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 24.6 bits (52), Expect = 9.9
Identities = 20/63 (31%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Query: 66 FGAVEATKDYQGQEMKDWIATLNLKTGVQSFFKKYIGIRGVFAWDLGSGKVNYQSHKDPT 125
FG T+D G ++D+I ++L G +K GV ++LG+G N S D
Sbjct: 218 FGNDYPTED--GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGN--SVLDVV 273
Query: 126 NSF 128
N+F
Sbjct: 274 NAF 276
>pdb|1UDC| Structure Of Udp-Galactose-4-Epimerase Complexed With Udp-Mannose
pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 24.6 bits (52), Expect = 9.9
Identities = 20/63 (31%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Query: 66 FGAVEATKDYQGQEMKDWIATLNLKTGVQSFFKKYIGIRGVFAWDLGSGKVNYQSHKDPT 125
FG T+D G ++D+I ++L G +K GV ++LG+G N S D
Sbjct: 218 FGNDYPTED--GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGN--SVLDVV 273
Query: 126 NSF 128
N+F
Sbjct: 274 NAF 276
>pdb|1A9Y| Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH
Udp-Glucose
Length = 338
Score = 24.6 bits (52), Expect = 9.9
Identities = 20/63 (31%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Query: 66 FGAVEATKDYQGQEMKDWIATLNLKTGVQSFFKKYIGIRGVFAWDLGSGKVNYQSHKDPT 125
FG T+D G ++D+I ++L G +K GV ++LG+G N S D
Sbjct: 218 FGNDYPTED--GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGN--SVLDVV 273
Query: 126 NSF 128
N+F
Sbjct: 274 NAF 276
>pdb|1KVU| Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 24.6 bits (52), Expect = 9.9
Identities = 20/63 (31%), Positives = 31/63 (48%), Gaps = 4/63 (6%)
Query: 66 FGAVEATKDYQGQEMKDWIATLNLKTGVQSFFKKYIGIRGVFAWDLGSGKVNYQSHKDPT 125
FG T+D G ++D+I ++L G +K GV ++LG+G N S D
Sbjct: 218 FGNDYPTED--GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGN--SVLDVV 273
Query: 126 NSF 128
N+F
Sbjct: 274 NAF 276
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.325 0.143 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,358,472
Number of Sequences: 13198
Number of extensions: 55918
Number of successful extensions: 164
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 162
Number of HSP's gapped (non-prelim): 16
length of query: 231
length of database: 2,899,336
effective HSP length: 85
effective length of query: 146
effective length of database: 1,777,506
effective search space: 259515876
effective search space used: 259515876
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)