BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646077|ref|NP_208259.1| branched-chain-amino-acid
aminotransferase (ilvE) [Helicobacter pylori 26695]
(340 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EKF|A Chain A, Crystallographic Structure Of Human Bra... 144 1e-35
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli B... 121 1e-28
pdb|1A3G|A Chain A, Branched-Chain Amino Acid Aminotransfer... 121 1e-28
pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino A... 37 0.002
pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino A... 37 0.002
pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotrans... 37 0.003
pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotrans... 35 0.009
pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-Phosph... 35 0.009
pdb|1D1S|A Chain A, Wild-Type Human Sigma (Class Iv) Alcoho... 27 3.3
pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydroge... 27 3.3
pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Esc... 26 5.7
pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Esc... 26 5.7
pdb|1I5N|D Chain D, Crystal Structure Of The P1 Domain Of C... 26 7.4
pdb|1HZZ|B Chain B, The Asymmetric Complex Of The Two Nucle... 25 9.7
pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Ch... 25 9.7
>pdb|1EKF|A Chain A, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 1.95 Angstroms (Orthorhombic
Form
pdb|1EKF|B Chain B, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 1.95 Angstroms (Orthorhombic
Form
pdb|1EKV|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1EKV|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1EKP|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal- 5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKP|B Chain B, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal- 5'-Phosphate At 2.5 Angstroms (Monoclinic
Form)
Length = 365
Score = 144 bits (363), Expect = 1e-35
Identities = 104/343 (30%), Positives = 165/343 (47%), Gaps = 20/343 (5%)
Query: 12 LGFSYIKTDFRFIATYKNGSWSQGGLVSENMLQLSEGSPVLHYGQACFEGLKAYRSQKGK 71
L F TD + + + W Q + L L S LHY FEG+KA++ + +
Sbjct: 28 LVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQ 87
Query: 72 ALLFRPLENAKRLQTSCERLLMPKVSEELFLRACAEVVKANQKWLAPYKSGASLYLRPFV 131
LFRP N R+ S RL +P + L +++ ++ W+ P +G SLY+RP +
Sbjct: 88 VRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWV-PDAAGTSLYVRPVL 146
Query: 132 IGVGDNLGV-KPANEYLFIVFCAPVGAYFKGGIEKGGARFITTIFDRAAPKGTGGVKVGG 190
IG +LGV +P LF++ C PVGAYF GG + F RA G G K+GG
Sbjct: 147 IGNEPSLGVSQPRRALLFVILC-PVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGG 205
Query: 191 NYAASLLAHKMATEQGYDDCIYLDPTTHTKIEEVGAANFFGI-THDDAFI----TPHSPS 245
NY ++L + A ++G + ++L H ++ EVG N F TH+D + P +
Sbjct: 206 NYGPTVLVQQEALKRGCEQVLWLYGPDH-QLTEVGTMNIFVYWTHEDGVLELVTPPLNGV 264
Query: 246 ILPSITKKSLMVLAKEYLNLKVEEREILMDEL------DAFKEAGACGTAAIITPIKEIV 299
ILP + ++SL+ +A+ + +V ER I M +L +E GTA + P+ I+
Sbjct: 265 ILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRIL 324
Query: 300 HNNKSYF---FEAPGHITKRLYDLLLSIQQGEQEAPKDWIFEV 339
+ +++ E + R L IQ G + +W+F V
Sbjct: 325 YKDRNLHIPTMENGPELILRFQKELKEIQYGIR--AHEWMFPV 365
>pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 121 bits (303), Expect = 1e-28
Identities = 99/314 (31%), Positives = 148/314 (46%), Gaps = 22/314 (7%)
Query: 32 WSQGGLVSENMLQLSEGSPVLHYGQACFEGLKAYRSQKGKALLFRPLENAKRLQTSCERL 91
W G +V ++ S LHYG + FEG++ Y S KG ++FR E+ +RL S +
Sbjct: 10 WFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKG-PVVFRHREHMQRLHDSAKIY 68
Query: 92 LMPKVSEEL--FLRACAEVVKANQKWLAPYKSGASLYLRPFVIGVGD-NLGVKPANEYL- 147
P VS+ + + AC +V++ N S Y+RP + VGD +GV P Y
Sbjct: 69 RFP-VSQSIDELMEACRDVIRKNNL--------TSAYIRPLIF-VGDVGMGVNPPAGYST 118
Query: 148 -FIVFCAPVGAYFKGGIEKGGARFITTIFDRAAPKG-TGGVKVGGNYAASLLAHKMATEQ 205
I+ P GAY + G + + ++RAAP K GGNY +SLL A
Sbjct: 119 DVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRH 178
Query: 206 GYDDCIYLDPTTHTKIEEVGAANFFGITHDDAFITPHSPSILPSITKKSLMVLAKEYLNL 265
GY + I LD + I E N F + F P + S LP IT+ +++ LAKE L +
Sbjct: 179 GYQEGIALDVNGY--ISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKE-LGI 235
Query: 266 KVEEREILMDELDAFKEAGACGTAAIITPIKEIVHNNKSYFFEAPGHITKRLYDLLLSIQ 325
+V E+ + + L E GTAA ITP++ + + G +TKR+ +
Sbjct: 236 EVREQVLSRESLYLADEVFMSGTAAEITPVRSV--DGIQVGEGRCGPVTKRIQQAFFGLF 293
Query: 326 QGEQEAPKDWIFEV 339
GE E W+ +V
Sbjct: 294 TGETEDKWGWLDQV 307
>pdb|1A3G|A Chain A, Branched-Chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-Chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-Chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 121 bits (303), Expect = 1e-28
Identities = 99/314 (31%), Positives = 148/314 (46%), Gaps = 22/314 (7%)
Query: 32 WSQGGLVSENMLQLSEGSPVLHYGQACFEGLKAYRSQKGKALLFRPLENAKRLQTSCERL 91
W G +V ++ S LHYG + FEG++ Y S KG ++FR E+ +RL S +
Sbjct: 9 WFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKG-PVVFRHREHMQRLHDSAKIY 67
Query: 92 LMPKVSEEL--FLRACAEVVKANQKWLAPYKSGASLYLRPFVIGVGD-NLGVKPANEYL- 147
P VS+ + + AC +V++ N S Y+RP + VGD +GV P Y
Sbjct: 68 RFP-VSQSIDELMEACRDVIRKNNL--------TSAYIRPLIF-VGDVGMGVNPPAGYST 117
Query: 148 -FIVFCAPVGAYFKGGIEKGGARFITTIFDRAAPKG-TGGVKVGGNYAASLLAHKMATEQ 205
I+ P GAY + G + + ++RAAP K GGNY +SLL A
Sbjct: 118 DVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRH 177
Query: 206 GYDDCIYLDPTTHTKIEEVGAANFFGITHDDAFITPHSPSILPSITKKSLMVLAKEYLNL 265
GY + I LD + I E N F + F P + S LP IT+ +++ LAKE L +
Sbjct: 178 GYQEGIALDVNGY--ISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKE-LGI 234
Query: 266 KVEEREILMDELDAFKEAGACGTAAIITPIKEIVHNNKSYFFEAPGHITKRLYDLLLSIQ 325
+V E+ + + L E GTAA ITP++ + + G +TKR+ +
Sbjct: 235 EVREQVLSRESLYLADEVFMSGTAAEITPVRSV--DGIQVGEGRCGPVTKRIQQAFFGLF 292
Query: 326 QGEQEAPKDWIFEV 339
GE E W+ +V
Sbjct: 293 TGETEDKWGWLDQV 306
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|3DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|4DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
pdb|4DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
Length = 277
Score = 37.4 bits (85), Expect = 0.002
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 191 NYAASLLAHKMATEQG-YDDCIYLDPTTHTKIEEVGAANFFGITHDDAFITPHSPSILPS 249
N ++LA + A E+G Y+ ++ + T + E ++N FGI + P + IL
Sbjct: 148 NLLGAVLAKQEAHEKGCYEAILHRNNT----VTEGSSSNVFGIKDGILYTHPANNMILKG 203
Query: 250 ITKKSLMVLAKEYLNLKVEEREILMDELDAFKEAGACGTAAIITPIKEI 298
IT+ ++ A E +N+ V+E E E T + ITP+ EI
Sbjct: 204 ITRDVVIACANE-INMPVKEIPFTTHEALKMDELFVTSTTSEITPVIEI 251
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|1DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|2DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
pdb|2DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
Length = 282
Score = 37.4 bits (85), Expect = 0.002
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 191 NYAASLLAHKMATEQG-YDDCIYLDPTTHTKIEEVGAANFFGITHDDAFITPHSPSILPS 249
N ++LA + A E+G Y+ ++ + T + E ++N FGI + P + IL
Sbjct: 148 NLLGAVLAKQEAHEKGCYEAILHRNNT----VTEGSSSNVFGIKDGILYTHPANNMILKG 203
Query: 250 ITKKSLMVLAKEYLNLKVEEREILMDELDAFKEAGACGTAAIITPIKEI 298
IT+ ++ A E +N+ V+E E E T + ITP+ EI
Sbjct: 204 ITRDVVIACANE-INMPVKEIPFTTHEALKMDELFVTSTTSEITPVIEI 251
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|5DAA|B Chain B, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
Length = 277
Score = 37.0 bits (84), Expect = 0.003
Identities = 32/108 (29%), Positives = 49/108 (44%), Gaps = 4/108 (3%)
Query: 191 NYAASLLAHKMATEQGYDDCIYLDPTTHTKIEEVGAANFFGITHDDAFITPHSPSILPSI 250
N ++LA + A E+G + I T TK ++N FGI + P + IL I
Sbjct: 148 NLLGAVLAKQEAHEKGCYEAILHRNNTVTK---GSSSNVFGIKDGILYTHPANNMILKGI 204
Query: 251 TKKSLMVLAKEYLNLKVEEREILMDELDAFKEAGACGTAAIITPIKEI 298
T+ ++ A E +N+ V+E E E T + ITP+ EI
Sbjct: 205 TRDVVIACANE-INMPVKEIPFTTHEALKMDELFVTSTTSEITPVIEI 251
>pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|2DAB|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|2DAB|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
Length = 282
Score = 35.4 bits (80), Expect = 0.009
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 191 NYAASLLAHKMATEQG-YDDCIYLDPTTHTKIEEVGAANFFGITHDDAFITPHSPSILPS 249
N ++LA + A E+G Y+ ++ + T + E ++N FGI + P + I
Sbjct: 148 NLLGAVLAKQEAHEKGCYEAILHRNNT----VTEGSSSNVFGIKDGILYTHPANNMIAKG 203
Query: 250 ITKKSLMVLAKEYLNLKVEEREILMDELDAFKEAGACGTAAIITPIKEI 298
IT+ ++ A E +N+ V+E E E T + ITP+ EI
Sbjct: 204 ITRDVVIACANE-INMPVKEIPFTTHEALKMDELFVTSTTSEITPVIEI 251
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-Phosphate Enzyme D-Amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-Phosphate Enzyme D-Amino
Acid Aminotransferase
Length = 282
Score = 35.4 bits (80), Expect = 0.009
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 191 NYAASLLAHKMATEQG-YDDCIYLDPTTHTKIEEVGAANFFGITHDDAFITPHSPSILPS 249
N ++LA + A E+G Y+ ++ + T + ++N FGI + P + IL
Sbjct: 148 NLLGAVLAKQEAHEKGCYEAILHRNNT----VTSGSSSNVFGIKDGILYTHPANNMILKG 203
Query: 250 ITKKSLMVLAKEYLNLKVEEREILMDELDAFKEAGACGTAAIITPIKEI 298
IT+ ++ A E +N+ V+E E E T + ITP+ EI
Sbjct: 204 ITRDVVIACANE-INMPVKEIPFTTHEALKMDELFVTSTTSEITPVIEI 251
>pdb|1D1S|A Chain A, Wild-Type Human Sigma (Class Iv) Alcohol Dehydrogenase
pdb|1D1S|B Chain B, Wild-Type Human Sigma (Class Iv) Alcohol Dehydrogenase
pdb|1D1S|C Chain C, Wild-Type Human Sigma (Class Iv) Alcohol Dehydrogenase
pdb|1D1S|D Chain D, Wild-Type Human Sigma (Class Iv) Alcohol Dehydrogenase
pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase
pdb|1AGN|B Chain B, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase
pdb|1AGN|C Chain C, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase
pdb|1AGN|D Chain D, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase
Length = 373
Score = 26.9 bits (58), Expect = 3.3
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
Query: 278 DAFKEAGACGTAAIITP----------IKEIVHNNKSYFFEAPGHITKRLYDLLLS 323
D F++A A G I+P + E+ NN Y FE GH+ + + D L S
Sbjct: 226 DKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHL-ETMIDALAS 280
>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine
At Position 141
pdb|1D1T|B Chain B, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine
At Position 141
pdb|1D1T|C Chain C, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine
At Position 141
pdb|1D1T|D Chain D, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine
At Position 141
Length = 373
Score = 26.9 bits (58), Expect = 3.3
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
Query: 278 DAFKEAGACGTAAIITP----------IKEIVHNNKSYFFEAPGHITKRLYDLLLS 323
D F++A A G I+P + E+ NN Y FE GH+ + + D L S
Sbjct: 226 DKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHL-ETMIDALAS 280
>pdb|1CL2|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
pdb|1CL2|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli In
Complex With Aminoethoxyvinylglycine
Length = 395
Score = 26.2 bits (56), Expect = 5.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 295 IKEIVHNNKSYFFEAPGHITKRLYDL 320
+K + N K F E+PG IT ++D+
Sbjct: 141 VKHLQPNTKIVFLESPGSITMEVHDV 166
>pdb|1CL1|A Chain A, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
pdb|1CL1|B Chain B, Cystathionine Beta-Lyase (Cbl) From Escherichia Coli
Length = 395
Score = 26.2 bits (56), Expect = 5.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 295 IKEIVHNNKSYFFEAPGHITKRLYDL 320
+K + N K F E+PG IT ++D+
Sbjct: 141 VKHLQPNTKIVFLESPGSITMEVHDV 166
>pdb|1I5N|D Chain D, Crystal Structure Of The P1 Domain Of Chea From Salmonella
Typhimurium
pdb|1I5N|A Chain A, Crystal Structure Of The P1 Domain Of Chea From Salmonella
Typhimurium
pdb|1I5N|C Chain C, Crystal Structure Of The P1 Domain Of Chea From Salmonella
Typhimurium
pdb|1I5N|B Chain B, Crystal Structure Of The P1 Domain Of Chea From Salmonella
Typhimurium
Length = 146
Score = 25.8 bits (55), Expect = 7.4
Identities = 17/59 (28%), Positives = 28/59 (46%), Gaps = 2/59 (3%)
Query: 225 GAANFFGITHDDAFITPHSPSILPSITKKSLMVLAKEYLNLKVEEREILMDELDAFKEA 283
G A FG T T H L ++ L + +NL +E ++I ++LDA+K +
Sbjct: 52 GGAGTFGFTILQE--TTHLXENLLDEARRGEXQLNTDIINLFLETKDIXQEQLDAYKNS 108
>pdb|1HZZ|B Chain B, The Asymmetric Complex Of The Two Nucleotide-Binding
Components (Di, Diii) Of Proton-Translocating
Transhydrogenase
pdb|1HZZ|A Chain A, The Asymmetric Complex Of The Two Nucleotide-Binding
Components (Di, Diii) Of Proton-Translocating
Transhydrogenase
Length = 384
Score = 25.4 bits (54), Expect = 9.7
Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 28/124 (22%)
Query: 72 ALLFRPLENA--KRLQTSCERLLMPKVSEELFLRACAEVVKANQKWLAPYKS---GASLY 126
AL RP+ A KR T+ LMP++S RA + + ++Q LA Y++ GA +
Sbjct: 102 ALTNRPVVEALTKRKITAYAMELMPRIS-----RAQSMDILSSQSNLAGYRAVIDGAYEF 156
Query: 127 LRPFVIGVGDNLGVKPANEYLF------------------IVFCAPVGAYFKGGIEKGGA 168
R F + + V PA +F +V V A K +E G
Sbjct: 157 ARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG 216
Query: 169 RFIT 172
+FIT
Sbjct: 217 KFIT 220
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
Length = 758
Score = 25.4 bits (54), Expect = 9.7
Identities = 15/42 (35%), Positives = 20/42 (46%)
Query: 107 EVVKANQKWLAPYKSGASLYLRPFVIGVGDNLGVKPANEYLF 148
EV + + WLA ++ RP + DNL ANE LF
Sbjct: 681 EVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLF 722
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.138 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,098,773
Number of Sequences: 13198
Number of extensions: 88982
Number of successful extensions: 174
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 15
length of query: 340
length of database: 2,899,336
effective HSP length: 89
effective length of query: 251
effective length of database: 1,724,714
effective search space: 432903214
effective search space used: 432903214
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)