BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644778|ref|NP_206948.1| hypothetical protein
[Helicobacter pylori 26695]
(194 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3AZU|A Chain A, Azurin Mutant With His 35 Replaced By G... 25 4.5
pdb|1GUP|A Chain A, Structure Of Nucleotidyltransferase Com... 25 5.9
pdb|1EZL|A Chain A, Crystal Structure Of The Disulphide Bon... 25 5.9
pdb|1HXP|A Chain A, Nucleotide Transferase >gi|1943511|pdb|... 25 5.9
pdb|1HXQ|A Chain A, The Structure Of Nucleotidylated Galact... 25 5.9
pdb|1HXQ|B Chain B, The Structure Of Nucleotidylated Galact... 25 5.9
>pdb|3AZU|A Chain A, Azurin Mutant With His 35 Replaced By Gln (H35Q)
pdb|3AZU|B Chain B, Azurin Mutant With His 35 Replaced By Gln (H35Q)
pdb|3AZU|C Chain C, Azurin Mutant With His 35 Replaced By Gln (H35Q)
pdb|3AZU|D Chain D, Azurin Mutant With His 35 Replaced By Gln (H35Q)
Length = 128
Score = 25.4 bits (54), Expect = 4.5
Identities = 11/31 (35%), Positives = 18/31 (57%)
Query: 137 MLINGYSVAVDALAQKYRVNITQNFNAPKGV 167
M N ++ VD +++ VN++Q N PK V
Sbjct: 13 MQFNTNAITVDKSCKQFTVNLSQPGNLPKNV 43
>pdb|1GUP|A Chain A, Structure Of Nucleotidyltransferase Complexed With
Udp-Galactose
pdb|1GUQ|A Chain A, Structure Of Nucleotidyltransferase Complexed With
Udp-Glucose
pdb|1GUP|B Chain B, Structure Of Nucleotidyltransferase Complexed With
Udp-Galactose
pdb|1GUP|C Chain C, Structure Of Nucleotidyltransferase Complexed With
Udp-Galactose
pdb|1GUP|D Chain D, Structure Of Nucleotidyltransferase Complexed With
Udp-Galactose
pdb|1GUQ|B Chain B, Structure Of Nucleotidyltransferase Complexed With
Udp-Glucose
pdb|1GUQ|C Chain C, Structure Of Nucleotidyltransferase Complexed With
Udp-Glucose
pdb|1GUQ|D Chain D, Structure Of Nucleotidyltransferase Complexed With
Udp-Glucose
Length = 348
Score = 25.0 bits (53), Expect = 5.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 46 KTGVRFVIDMTDFEKNPIALATKKERQNYQEGF 78
K V + D+TD +++ +ALA KK Y F
Sbjct: 238 KAHVLRITDLTDAQRSDLALALKKLTSRYDNLF 270
>pdb|1EZL|A Chain A, Crystal Structure Of The Disulphide Bond-Deficient Azurin
Mutant C3aC26A: HOW IMPORTANT IS THE S-S Bond For
Folding And Stability?
pdb|1EZL|B Chain B, Crystal Structure Of The Disulphide Bond-Deficient Azurin
Mutant C3aC26A: HOW IMPORTANT IS THE S-S Bond For
Folding And Stability?
pdb|1EZL|C Chain C, Crystal Structure Of The Disulphide Bond-Deficient Azurin
Mutant C3aC26A: HOW IMPORTANT IS THE S-S Bond For
Folding And Stability?
pdb|1EZL|D Chain D, Crystal Structure Of The Disulphide Bond-Deficient Azurin
Mutant C3aC26A: HOW IMPORTANT IS THE S-S Bond For
Folding And Stability?
Length = 128
Score = 25.0 bits (53), Expect = 5.9
Identities = 11/31 (35%), Positives = 18/31 (57%)
Query: 137 MLINGYSVAVDALAQKYRVNITQNFNAPKGV 167
M N ++ VD A+++ VN++ N PK V
Sbjct: 13 MQFNTNAITVDKSAKQFTVNLSHPGNLPKNV 43
>pdb|1HXP|A Chain A, Nucleotide Transferase
pdb|1HXP|B Chain B, Nucleotide Transferase
Length = 348
Score = 25.0 bits (53), Expect = 5.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 46 KTGVRFVIDMTDFEKNPIALATKKERQNYQEGF 78
K V + D+TD +++ +ALA KK Y F
Sbjct: 238 KAHVLRITDLTDAQRSDLALALKKLTSRYDNLF 270
>pdb|1HXQ|A Chain A, The Structure Of Nucleotidylated Galactose-1-Phosphate
Uridylyltransferase From Escherichia Coli At 1.86
Angstroms Resolution
Length = 348
Score = 25.0 bits (53), Expect = 5.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 46 KTGVRFVIDMTDFEKNPIALATKKERQNYQEGF 78
K V + D+TD +++ +ALA KK Y F
Sbjct: 238 KAHVLRITDLTDAQRSDLALALKKLTSRYDNLF 270
>pdb|1HXQ|B Chain B, The Structure Of Nucleotidylated Galactose-1-Phosphate
Uridylyltransferase From Escherichia Coli At 1.86
Angstroms Resolution
Length = 348
Score = 25.0 bits (53), Expect = 5.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 46 KTGVRFVIDMTDFEKNPIALATKKERQNYQEGF 78
K V + D+TD +++ +ALA KK Y F
Sbjct: 238 KAHVLRITDLTDAQRSDLALALKKLTSRYDNLF 270
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.327 0.144 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,076,221
Number of Sequences: 13198
Number of extensions: 41655
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 6
length of query: 194
length of database: 2,899,336
effective HSP length: 83
effective length of query: 111
effective length of database: 1,803,902
effective search space: 200233122
effective search space used: 200233122
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)