BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646082|ref|NP_208264.1| hypothetical protein
[Helicobacter pylori 26695]
(191 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1CJB|C Chain C, Malarial Purine Phosphoribosyltransfera... 27 1.5
pdb|1BUA|A Chain A, EcorvGACITCCA2+ >gi|3660122|pdb|1BSU|A ... 26 2.6
pdb|1B96|A Chain A, Analysis Of A Mutational Hot-Spot In Th... 26 2.6
pdb|1B94|A Chain A, Restriction Endonuclease Ecorv With Cal... 26 2.6
pdb|1KHB|A Chain A, Pepck Complex With Nonhydrolyzable Gtp ... 26 2.6
pdb|1BSS|A Chain A, Ecorv-T93aDNACA2+ >gi|3660119|pdb|1BSS|... 26 2.6
pdb|1B97|A Chain A, Restriction Endonuclease Ecorv Mutant Q... 26 2.6
pdb|1RVE|A Chain A, Eco Rv Endonuclease (E.C.3.1.21.4) >gi|... 26 2.6
pdb|1STO| Orotate Phosphoribosyltransferase (Oprtase) (E.... 26 3.3
pdb|1LH0|A Chain A, Crystal Structure Of Salmonella Typhimu... 26 3.3
pdb|1ORO|A Chain A, A Flexible Loop At The Dimer Interface ... 26 3.3
pdb|1LPF|A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8... 26 3.3
pdb|2LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus... 25 4.4
pdb|1KHE|A Chain A, Pepck Complex With Nonhydrolyzable Gtp ... 25 4.4
pdb|1QPG| 3-Phosphoglycerate Kinase, Mutation R65q 24 9.7
pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Ki... 24 9.7
pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma ... 24 9.7
pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of... 24 9.7
pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of... 24 9.7
>pdb|1CJB|C Chain C, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|A Chain A, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|B Chain B, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|D Chain D, Malarial Purine Phosphoribosyltransferase
Length = 231
Score = 26.9 bits (58), Expect = 1.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 155 LLDDIITTGTTLKEALKYLKTLNIK 179
+++DII TG TL + +YLK IK
Sbjct: 142 IVEDIIDTGKTLVKFCEYLKKFEIK 166
>pdb|1BUA|A Chain A, EcorvGACITCCA2+
pdb|1BSU|A Chain A, EcorvGAMITCCA2+
pdb|1BSU|B Chain B, EcorvGAMITCCA2+
Length = 243
Score = 26.2 bits (56), Expect = 2.6
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 112 NLKPTYGRLRANNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDIITTGTTLKEALK 171
++K TY G F NN +N + D+ + ++++ + T T K +LK
Sbjct: 89 DIKTTYTNKENEKIKFTLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLK 148
>pdb|1B96|A Chain A, Analysis Of A Mutational Hot-Spot In The Ecorv Restriction
Endonuclease: A Catalytic Role For A Main Chain Carbonyl
Group
pdb|1B96|B Chain B, Analysis Of A Mutational Hot-Spot In The Ecorv Restriction
Endonuclease: A Catalytic Role For A Main Chain Carbonyl
Group
Length = 244
Score = 26.2 bits (56), Expect = 2.6
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 112 NLKPTYGRLRANNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDIITTGTTLKEALK 171
++K TY G F NN +N + D+ + ++++ + T T K +LK
Sbjct: 89 DIKTTYTNKENEKIKFTLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLK 148
>pdb|1B94|A Chain A, Restriction Endonuclease Ecorv With Calcium
pdb|1B94|B Chain B, Restriction Endonuclease Ecorv With Calcium
pdb|1RVA|A Chain A, Eco Rv Endonuclease (E.C.3.1.21.4) Complexed With
Substrate Dna
pdb|1RVA|B Chain B, Eco Rv Endonuclease (E.C.3.1.21.4) Complexed With
Substrate Dna
pdb|1B95|A Chain A, Analysis Of A Mutational Hot-Spot In The Ecorv Restriction
Endonuclease: A Catalytic Role For A Main Chain Carbonyl
Group
pdb|1B95|B Chain B, Analysis Of A Mutational Hot-Spot In The Ecorv Restriction
Endonuclease: A Catalytic Role For A Main Chain Carbonyl
Group
pdb|1RVC|A Chain A, Eco Rv Endonuclease (E.C.3.1.21.4) Complexed With Product
Dna And Magnesium
pdb|1RVC|B Chain B, Eco Rv Endonuclease (E.C.3.1.21.4) Complexed With Product
Dna And Magnesium
pdb|1RVB|A Chain A, Eco Rv Endonuclease (E.C.3.1.21.4) Complexed With
Substrate Dna And Magnesium
pdb|1RVB|B Chain B, Eco Rv Endonuclease (E.C.3.1.21.4) Complexed With
Substrate Dna And Magnesium
pdb|4RVE|A Chain A, Eco Rv Endonuclease Complex With Dna
pdb|4RVE|B Chain B, Eco Rv Endonuclease Complex With Dna
pdb|4RVE|C Chain C, Eco Rv Endonuclease Complex With Dna
pdb|1RV5|A Chain A, Complex Of Ecorv Endonuclease With D(Aaagat)D(ATCTT)
pdb|1RV5|B Chain B, Complex Of Ecorv Endonuclease With D(Aaagat)D(ATCTT)
pdb|2RVE|A Chain A, Eco Rv Endonuclease Complex With Dna
pdb|2RVE|B Chain B, Eco Rv Endonuclease Complex With Dna
pdb|1AZ0|A Chain A, EcorvDNACA2+
pdb|1BGB|A Chain A, Ecorv Endonuclease Complex With 5'-Cgggatatccc Dna
pdb|1AZ0|B Chain B, EcorvDNACA2+
pdb|1BGB|B Chain B, Ecorv Endonuclease Complex With 5'-Cgggatatccc Dna
pdb|1AZ3|B Chain B, Ecorv Endonuclease, Unliganded, Form B
pdb|1AZ3|A Chain A, Ecorv Endonuclease, Unliganded, Form B
Length = 244
Score = 26.2 bits (56), Expect = 2.6
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 112 NLKPTYGRLRANNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDIITTGTTLKEALK 171
++K TY G F NN +N + D+ + ++++ + T T K +LK
Sbjct: 89 DIKTTYTNKENEKIKFTLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLK 148
>pdb|1KHB|A Chain A, Pepck Complex With Nonhydrolyzable Gtp Analog, Native Data
pdb|1KHF|A Chain A, Pepck Complex With Pep
pdb|1KHG|A Chain A, Pepck
Length = 625
Score = 26.2 bits (56), Expect = 2.6
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 47 ELIKSKYALIGSRIL-----PLLSQKAGAEFVKILQEQGLNIPL 85
EL S Y + RI+ P+L EFVK L G +PL
Sbjct: 162 ELTDSPYVVASMRIMTRMGTPVLEALGDGEFVKCLHSVGCPLPL 205
>pdb|1BSS|A Chain A, Ecorv-T93aDNACA2+
pdb|1BSS|B Chain B, Ecorv-T93aDNACA2+
pdb|1AZ4|B Chain B, Ecorv Endonuclease, Unliganded, Form B, T93a Mutant
pdb|1AZ4|A Chain A, Ecorv Endonuclease, Unliganded, Form B, T93a Mutant
Length = 244
Score = 26.2 bits (56), Expect = 2.6
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 112 NLKPTYGRLRANNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDIITTGTTLKEALK 171
++K TY G F NN +N + D+ + ++++ + T T K +LK
Sbjct: 89 DIKATYTNKENEKIKFTLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLK 148
>pdb|1B97|A Chain A, Restriction Endonuclease Ecorv Mutant Q69l
pdb|1B97|B Chain B, Restriction Endonuclease Ecorv Mutant Q69l
Length = 244
Score = 26.2 bits (56), Expect = 2.6
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 112 NLKPTYGRLRANNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDIITTGTTLKEALK 171
++K TY G F NN +N + D+ + ++++ + T T K +LK
Sbjct: 89 DIKTTYTNKENEKIKFTLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLK 148
>pdb|1RVE|A Chain A, Eco Rv Endonuclease (E.C.3.1.21.4)
pdb|1RVE|B Chain B, Eco Rv Endonuclease (E.C.3.1.21.4)
pdb|1EOP|B Chain B, Ecorv Bound To Cognate Dna
pdb|1EOP|A Chain A, Ecorv Bound To Cognate Dna
pdb|1EOO|A Chain A, Ecorv Bound To Cognate Dna
pdb|1EOO|B Chain B, Ecorv Bound To Cognate Dna
pdb|1EO3|A Chain A, Inhibition Of Ecorv Endonuclease By Deoxyribo-3'-S-
Phosphorothiolates: A High Resolution X-Ray
Crystallographic Study
pdb|1EO3|B Chain B, Inhibition Of Ecorv Endonuclease By Deoxyribo-3'-S-
Phosphorothiolates: A High Resolution X-Ray
Crystallographic Study
pdb|1EO4|B Chain B, Ecorv Bound To Mn2+ And Cognate Dna Containing A 3's
Substition At The Cleavage Site
pdb|1EON|B Chain B, Ecorv Bound To 3'-S-Phosphorothiolate Dna And Ca2+
pdb|1EO4|A Chain A, Ecorv Bound To Mn2+ And Cognate Dna Containing A 3's
Substition At The Cleavage Site
pdb|1EON|A Chain A, Ecorv Bound To 3'-S-Phosphorothiolate Dna And Ca2+
Length = 245
Score = 26.2 bits (56), Expect = 2.6
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 112 NLKPTYGRLRANNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDIITTGTTLKEALK 171
++K TY G F NN +N + D+ + ++++ + T T K +LK
Sbjct: 90 DIKTTYTNKENEKIKFTLGGYTSFIRNNTKNIVYPFDQYIAHWIIGYVYTRVATRKSSLK 149
>pdb|1STO| Orotate Phosphoribosyltransferase (Oprtase) (E.C.2.4.2.10)
Length = 213
Score = 25.8 bits (55), Expect = 3.3
Identities = 8/20 (40%), Positives = 17/20 (85%)
Query: 155 LLDDIITTGTTLKEALKYLK 174
L+DD+IT GT ++E+++ ++
Sbjct: 122 LVDDVITAGTAIRESMEIIQ 141
>pdb|1LH0|A Chain A, Crystal Structure Of Salmonella Typhimurium Omp Synthase
In Complex With Mgprpp And Orotate
pdb|1LH0|B Chain B, Crystal Structure Of Salmonella Typhimurium Omp Synthase
In Complex With Mgprpp And Orotate
pdb|1OPR| Mol_id: 1; Molecule: Orotate Phosphoribosyltransferase; Chain:
Null; Synonym: Oprtase; Ec: 2.4.2.10; Engineered: Yes
Length = 213
Score = 25.8 bits (55), Expect = 3.3
Identities = 8/20 (40%), Positives = 17/20 (85%)
Query: 155 LLDDIITTGTTLKEALKYLK 174
L+DD+IT GT ++E+++ ++
Sbjct: 122 LVDDVITAGTAIRESMEIIQ 141
>pdb|1ORO|A Chain A, A Flexible Loop At The Dimer Interface Is A Part Of The
Active Site Of The Adjacent Monomer Of Escherichia Coli
Orotate Phosphoribosyltransferase
pdb|1ORO|B Chain B, A Flexible Loop At The Dimer Interface Is A Part Of The
Active Site Of The Adjacent Monomer Of Escherichia Coli
Orotate Phosphoribosyltransferase
Length = 213
Score = 25.8 bits (55), Expect = 3.3
Identities = 8/20 (40%), Positives = 17/20 (85%)
Query: 155 LLDDIITTGTTLKEALKYLK 174
L+DD+IT GT ++E+++ ++
Sbjct: 122 LVDDVITAGTAIRESMEIIQ 141
>pdb|1LPF|A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Complex With
Flavin-Adenine-Dinucleotide (Fad)
pdb|1LPF|B Chain B, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Complex With
Flavin-Adenine-Dinucleotide (Fad)
Length = 477
Score = 25.8 bits (55), Expect = 3.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 59 RILPLLSQKAGAEFVKILQEQGLNIPL 85
+ LP ++ E +K+L +QGLNI L
Sbjct: 214 KFLPAADEQIAKEALKVLTKQGLNIRL 240
>pdb|2LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus Aureus
pdb|3LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus Aureus With
Phosphocholine Bound
pdb|1LKF|A Chain A, Leukocidin F (Hlgb) From Staphylococcus Aureus
Length = 299
Score = 25.4 bits (54), Expect = 4.4
Identities = 17/51 (33%), Positives = 23/51 (44%), Gaps = 3/51 (5%)
Query: 124 NAVSYAGKSL--EFRANNPRNFTFKGDESLDYFLLDDIITTGTTLKEALKY 172
N V YA K+ EF+ N +TF GD S+ L + T E + Y
Sbjct: 95 NVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLSGG-LNGNTAFSETINY 144
>pdb|1KHE|A Chain A, Pepck Complex With Nonhydrolyzable Gtp Analog, Mad Data
Length = 625
Score = 25.4 bits (54), Expect = 4.4
Identities = 16/44 (36%), Positives = 19/44 (42%), Gaps = 5/44 (11%)
Query: 47 ELIKSKYALIGSRIL-----PLLSQKAGAEFVKILQEQGLNIPL 85
EL S Y + RI P+L EFVK L G +PL
Sbjct: 162 ELTDSPYVVASXRIXTRXGTPVLEALGDGEFVKCLHSVGCPLPL 205
>pdb|1QPG| 3-Phosphoglycerate Kinase, Mutation R65q
Length = 415
Score = 24.3 bits (51), Expect = 9.7
Identities = 13/47 (27%), Positives = 26/47 (54%)
Query: 30 VLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKIL 76
++ G ++F E E+ S + G+ I+P L +KA A+ V+++
Sbjct: 232 IIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVV 278
>pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Kinase From Yeast:
Pgk P72
Length = 416
Score = 24.3 bits (51), Expect = 9.7
Identities = 13/47 (27%), Positives = 26/47 (54%)
Query: 30 VLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKIL 76
++ G ++F E E+ S + G+ I+P L +KA A+ V+++
Sbjct: 162 IIGGGMAFTFKKVLENTEIGDSIFDKAGAEIVPKLMEKAKAKGVEVV 208
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 24.3 bits (51), Expect = 9.7
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 2 RCLTCLKLSFKPLCPNCLNDLPLSLKVRVLE 32
RC C + S P+CP C ++ +V ++
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation
Factor Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation
Factor Eif2 From Pyrococcus Abyssi-G235d Mutant
Complexed With Gdp-Mg2+
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation
Factor Eif2 From Pyrococcus Abyssi-G235d Mutant
Complexed With Gdpnp-Mg2+
Length = 410
Score = 24.3 bits (51), Expect = 9.7
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 2 RCLTCLKLSFKPLCPNCLNDLPLSLKVRVLE 32
RC C + S P+CP C ++ +V ++
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation
Factor Eif2 From Pyrococcus Abyssi
Length = 410
Score = 24.3 bits (51), Expect = 9.7
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 2 RCLTCLKLSFKPLCPNCLNDLPLSLKVRVLE 32
RC C + S P+CP C ++ +V ++
Sbjct: 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.140 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,057,478
Number of Sequences: 13198
Number of extensions: 41625
Number of successful extensions: 106
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 19
length of query: 191
length of database: 2,899,336
effective HSP length: 83
effective length of query: 108
effective length of database: 1,803,902
effective search space: 194821416
effective search space used: 194821416
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)