BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646083|ref|NP_208265.1| thymidylate kinase (tmk)
[Helicobacter pylori 26695]
         (191 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|4TMK|A  Chain A, Complex Of E. Coli Thymidylate Kinase W...    74  8e-15
pdb|3TMK|A  Chain A, Crystal Structure Of Yeast Thymidylate ...    44  2e-05
pdb|1E9F|A  Chain A, Mutant Human Thymidylate Kinase Complex...    40  1e-04
pdb|1E9E|A  Chain A, Mutant Human Thymidylate Kinase (F105y)...    37  0.001
pdb|1G3U|A  Chain A, Crystal Structure Of Mycobacterium Tube...    37  0.001
pdb|1E9A|A  Chain A, Human Thymidylate Kinase Complexed With...    35  0.004
pdb|1E98|A  Chain A, Wild Type Human Thymidylate Kinase Comp...    35  0.004
pdb|1ZAK|A  Chain A, Adenylate Kinase From Maize In Complex ...    32  0.061
pdb|3AKY|    Atp:amp Phosphotransferase, Myokinase Mol_id: 1...    27  1.5
pdb|1DVR|A  Chain A, Nucleoside Monophosphate Kinase, Myokin...    27  1.5
pdb|1AKY|    Atp:amp Phosphotransferase, Myokinase Mol_id: 1...    27  1.5
pdb|1B0N|A  Chain A, Sinr ProteinSINI PROTEIN COMPLEX              26  3.3
pdb|1INZ|A  Chain A, Solution Structure Of The Epsin N-Termi...    25  4.4
pdb|1EYH|A  Chain A, Crystal Structure Of The Epsin N-Termin...    25  4.4
pdb|1H0A|A  Chain A, Epsin Enth Bound To Ins(1,4,5)p3              25  4.4
pdb|1F6B|B  Chain B, Crystal Structure Of Sar1-Gdp Complex >...    25  7.5
pdb|1AD3|A  Chain A, Class 3 Aldehyde Dehydrogenase Complex ...    25  7.5
>pdb|4TMK|A Chain A, Complex Of E. Coli Thymidylate Kinase With The Bisubstrate
           Inhibitor Tp5a
 pdb|5TMP|A Chain A, Complex Of E. Coli Thymidylate Kinase With The Bisubstrate
           Inhibitor Aztp5a
          Length = 213

 Score = 74.3 bits (181), Expect = 8e-15
 Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 19/161 (11%)

Query: 2   YVVLEGVDGAGKSTQ----VELLKDR-FKNALFTKEPGGTRMGESLRRIALN------EN 50
           Y+V+EG++GAGK+T     VE L+    ++ +FT+EPGGT++ E LR + L+      E 
Sbjct: 5   YIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEV 64

Query: 51  ISELARAFLFLSDRAEHTESVIKPALKEKKLIISDRSLISGMAYSQFS-SLELNLLAT-- 107
           I++ A   +F + R +  E+VIKPAL     +I DR  +S  AY      ++ ++LAT  
Sbjct: 65  ITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLR 124

Query: 108 QSVL----PAKIILLLIDKE-GLKQRLSLKSLDKIENQGIE 143
            +VL    P   + L +  E GLK+  +   LD+IE +  +
Sbjct: 125 DAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFD 165
>pdb|3TMK|A Chain A, Crystal Structure Of Yeast Thymidylate Kinase Complexed
           With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
           Implications For Catalysis And Azt Activation
 pdb|3TMK|B Chain B, Crystal Structure Of Yeast Thymidylate Kinase Complexed
           With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
           Implications For Catalysis And Azt Activation
 pdb|3TMK|F Chain F, Crystal Structure Of Yeast Thymidylate Kinase Complexed
           With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
           Implications For Catalysis And Azt Activation
 pdb|3TMK|E Chain E, Crystal Structure Of Yeast Thymidylate Kinase Complexed
           With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
           Implications For Catalysis And Azt Activation
 pdb|3TMK|G Chain G, Crystal Structure Of Yeast Thymidylate Kinase Complexed
           With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
           Implications For Catalysis And Azt Activation
 pdb|3TMK|D Chain D, Crystal Structure Of Yeast Thymidylate Kinase Complexed
           With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
           Implications For Catalysis And Azt Activation
 pdb|3TMK|H Chain H, Crystal Structure Of Yeast Thymidylate Kinase Complexed
           With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
           Implications For Catalysis And Azt Activation
 pdb|3TMK|C Chain C, Crystal Structure Of Yeast Thymidylate Kinase Complexed
           With The Bisubstrate Inhibitor Tp5a At 2.0 A Resolution:
           Implications For Catalysis And Azt Activation
 pdb|1TMK|A Chain A, Yeast Thymidylate Kinase Complexed With Thymidine
           Monophosphate (Dtmp)
 pdb|1TMK|B Chain B, Yeast Thymidylate Kinase Complexed With Thymidine
           Monophosphate (Dtmp)
 pdb|2TMK|A Chain A, Yeast Thymidylate Kinase Complexed With
           3'-Azido-3'-Deoxythymidine Monophosphate (Azt-Mp)
 pdb|2TMK|B Chain B, Yeast Thymidylate Kinase Complexed With
           3'-Azido-3'-Deoxythymidine Monophosphate (Azt-Mp)
          Length = 216

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 5/97 (5%)

Query: 3   VVLEGVDGAGKSTQVELLKDRFK-NALFTKEPG-GTRMGESLRRIALNEN--ISELARAF 58
           +++EG+D  GK+TQ  +L  + + N    K P   TR+G  +     +++  +S+ A   
Sbjct: 8   ILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHL 67

Query: 59  LFLSDRAEHTESVIKPALKEKKLIISDRSLISGMAYS 95
           LF ++R E  +  IK  L E K I+ DR + SG+AYS
Sbjct: 68  LFSANRWEIVDK-IKKDLLEGKNIVMDRYVYSGVAYS 103
>pdb|1E9F|A Chain A, Mutant Human Thymidylate Kinase Complexed With Tmp And Adp
          Length = 217

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 51/200 (25%), Positives = 90/200 (44%), Gaps = 18/200 (9%)

Query: 3   VVLEGVDGAGKSTQ----VELLKDRFKNALFTKEP-GGTRMGESLRR-IALNENISELAR 56
           +VLEGVDGAGKSTQ    VE L      A   + P   T +G+ L   +    ++ + + 
Sbjct: 12  IVLEGVDGAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSV 71

Query: 57  AFLFLSDRAEHTESVIKPALKEKKLIISDRSLISGMAYS-QFSSLELNLLATQSV-LPAK 114
             LF ++R E    +IK  L +   ++ DR   SG+A++    +  L+      V LP  
Sbjct: 72  HLLFSANRWEQV-PLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKP 130

Query: 115 IILLLID---KEGLKQRLSLKSLDKIENQGIEKLLHIQQKLKTHAYALQEKFGCEVLELD 171
            ++L +     +  K+  +   L++ EN         Q++     + L +        +D
Sbjct: 131 DLVLFLQLQLADAAKRGRARGELERYENGA------FQERALRCFHQLMKDTTLNWKMVD 184

Query: 172 AKESVKNLHEKIAAFIKCAV 191
           A +S++ +HE I    + A+
Sbjct: 185 ASKSIEAVHEDIRVLSEDAI 204
>pdb|1E9E|A Chain A, Mutant Human Thymidylate Kinase (F105y) Complexed With
           Dtmp And Adp
 pdb|1E9D|A Chain A, Mutant Human Thymidylate Kinase (F105y) Complexed With
           Aztmp And Adp
 pdb|1E9C|A Chain A, Mutant Human Thymidylate Kinase Complexed With Tmp And
           Appnp
          Length = 215

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 7/99 (7%)

Query: 3   VVLEGVDGAGKSTQ----VELLKDRFKNALFTKEP-GGTRMGESLRR-IALNENISELAR 56
           +VLEGVD AGKSTQ    VE L      A   + P   T +G+ L   +    ++ + + 
Sbjct: 12  IVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSV 71

Query: 57  AFLFLSDRAEHTESVIKPALKEKKLIISDRSLISGMAYS 95
             LF ++R E    +IK  L +   ++ DR   SG+AY+
Sbjct: 72  HLLFSANRWEQV-PLIKEKLSQGVTLVVDRYAFSGVAYT 109
>pdb|1G3U|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
           Thymidylate Kinase Complexed With Thymidine
           Monophosphate (Tmp)
 pdb|1GTV|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
           Thymidylate Kinase Complexed With
           Thymidine-5'-Diphosphate (Tdp)
 pdb|1GTV|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
           Thymidylate Kinase Complexed With
           Thymidine-5'-Diphosphate (Tdp)
 pdb|1GSI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
           Thymidylate Kinase Complexed With Thymidine
           Monophosphate (Tmp)
          Length = 214

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 35/105 (33%), Positives = 47/105 (44%), Gaps = 11/105 (10%)

Query: 1   MYVVLEGVDGAGKSTQVELLKDRFKNA-LFTKEPGGTRMGESLRRIALNENI-------- 51
           M + +EGVDGAGK T VE L   F+ A          R G+S+      E +        
Sbjct: 1   MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLA 60

Query: 52  -SELARAFLFLSDRAEHTESVIKPALKEKKLIISDRSLISGMAYS 95
            S  A A LF  DRA    + I+   +   ++I DR + S  AYS
Sbjct: 61  SSVYAMATLFALDRAGAVHT-IQGLCRGYDVVILDRYVASNAAYS 104
>pdb|1E9A|A Chain A, Human Thymidylate Kinase Complexed With The Bisubstrate
           Inhibitor Aztp5a
 pdb|1E2D|A Chain A, Human Thymidylate Kinase Complexed With Thymidine
           Monophosphate, Adenosine Diphosphate And A Magnesium-Ion
 pdb|1E9B|A Chain A, Human Thymidylate Kinase Complexed With Aztmp And Appnp
 pdb|1E2Q|A Chain A, Human Thymidylate Kinase Complexed With Tp5a And A
           Magnesium-Ion
 pdb|1E99|A Chain A, Human Thymidylate Kinase Complexed With Aztmp And Adp
 pdb|1E2F|A Chain A, Human Thymidylate Kinase Complexed With Thymidine
           Monophosphate, Adenosine Diphosphate And A Magnesium-Ion
 pdb|1E2E|A Chain A, Human Thymidylate Kinase Complexed With Thymidine
           Monophosphate, Adenosine Diphosphate,A Magnesium-Ion And
           Alf3
 pdb|1E2G|A Chain A, Human Thymidylate Kinase Complexed With Adp, Tdp And A
           Magnesium-Ion
          Length = 215

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 7/99 (7%)

Query: 3   VVLEGVDGAGKSTQ----VELLKDRFKNALFTKEP-GGTRMGESLRR-IALNENISELAR 56
           +VLEGVD AGKSTQ    VE L      A   + P   T +G+ L   +    ++ + + 
Sbjct: 12  IVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSV 71

Query: 57  AFLFLSDRAEHTESVIKPALKEKKLIISDRSLISGMAYS 95
             LF ++R E    +IK  L +   ++ DR   SG+A++
Sbjct: 72  HLLFSANRWEQV-PLIKEKLSQGVTLVVDRYAFSGVAFT 109
>pdb|1E98|A Chain A, Wild Type Human Thymidylate Kinase Complexed With Aztmp
           And Adp
          Length = 215

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 7/99 (7%)

Query: 3   VVLEGVDGAGKSTQ----VELLKDRFKNALFTKEP-GGTRMGESLRR-IALNENISELAR 56
           +VLEGVD AGKSTQ    VE L      A   + P   T +G+ L   +    ++ + + 
Sbjct: 12  IVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSV 71

Query: 57  AFLFLSDRAEHTESVIKPALKEKKLIISDRSLISGMAYS 95
             LF ++R E    +IK  L +   ++ DR   SG+A++
Sbjct: 72  HLLFSANRWEQV-PLIKEKLSQGVTLVVDRYAFSGVAFT 109
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
           P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
 pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
           P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
          Length = 222

 Score = 31.6 bits (70), Expect = 0.061
 Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 26/154 (16%)

Query: 3   VVLEGVDGAGKSTQVELLKDRFKNALFTKEPGGTRMGESLR-RIALNENISELARAFLFL 61
           V++ G   +GK TQ EL+K +++ A  +        G+ LR  IA      + A+ F+  
Sbjct: 8   VMISGAPASGKGTQCELIKTKYQLAHIS-------AGDLLRAEIAAGSENGKRAKEFM-- 58

Query: 62  SDRAEHTESVIKPALKEKKLIISDRS----LISG--MAYSQFSSLELNLLATQSVLPAKI 115
            ++ +     I   + +++L   D      L+ G   +YSQ  +LE     T  + P   
Sbjct: 59  -EKGQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALE-----TLEIRPDTF 112

Query: 116 ILLLIDKEGLKQRLSLKSLDKIENQGIEKLLHIQ 149
           ILL +  E L +R+  + LD +      K+ H++
Sbjct: 113 ILLDVPDELLVERVVGRRLDPVTG----KIYHLK 142
>pdb|3AKY|   Atp:amp Phosphotransferase, Myokinase Mol_id: 1; Molecule:
          Adenylate Kinase; Chain: Null; Synonym: Atp:amp
          Phosphotransferase, Myokinase; Ec: 2.7.4.3; Engineered:
          Yes; Mutation: I213f; Heterogen: Ap5a; Heterogen:
          Imidazole
          Length = 221

 Score = 26.9 bits (58), Expect = 1.5
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 7/50 (14%)

Query: 3  VVLEGVDGAGKSTQVELLKDRFKNA-------LFTKEPGGTRMGESLRRI 45
          +VL G  GAGK TQ   L++RF  A       L ++   GT++G   ++I
Sbjct: 8  MVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKI 57
>pdb|1DVR|A Chain A, Nucleoside Monophosphate Kinase, Myokinase Mol_id: 1;
          Molecule: Adenylate Kinase; Chain: A, B; Synonym:
          Atp:amp-Phosphotransferase, Myokinase; Ec: 2.7.4.3;
          Engineered: Yes; Mutation: D89v, R165i
 pdb|1DVR|B Chain B, Nucleoside Monophosphate Kinase, Myokinase Mol_id: 1;
          Molecule: Adenylate Kinase; Chain: A, B; Synonym:
          Atp:amp-Phosphotransferase, Myokinase; Ec: 2.7.4.3;
          Engineered: Yes; Mutation: D89v, R165i
          Length = 220

 Score = 26.9 bits (58), Expect = 1.5
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 7/50 (14%)

Query: 3  VVLEGVDGAGKSTQVELLKDRFKNA-------LFTKEPGGTRMGESLRRI 45
          +VL G  GAGK TQ   L++RF  A       L ++   GT++G   ++I
Sbjct: 7  MVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKI 56
>pdb|1AKY|   Atp:amp Phosphotransferase, Myokinase Mol_id: 1; Molecule:
          Adenylate Kinase; Chain: Null; Synonym: Atp:amp
          Phosphotransferase, Myokinase; Ec: 2.7.4.3; Heterogen:
          Ap5a; Heterogen: Imidazole
 pdb|2AKY|   Atp:amp Phosphotransferase, Myokinase Mol_id: 1; Molecule:
          Adenylate Kinase; Chain: Null; Synonym: Atp:amp
          Phosphotransferase, Myokinase; Ec: 2.7.4.3; Heterogen:
          Ap5a; Heterogen: Mg
          Length = 221

 Score = 26.9 bits (58), Expect = 1.5
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 7/50 (14%)

Query: 3  VVLEGVDGAGKSTQVELLKDRFKNA-------LFTKEPGGTRMGESLRRI 45
          +VL G  GAGK TQ   L++RF  A       L ++   GT++G   ++I
Sbjct: 8  MVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKI 57
>pdb|1B0N|A Chain A, Sinr ProteinSINI PROTEIN COMPLEX
          Length = 111

 Score = 25.8 bits (55), Expect = 3.3
 Identities = 15/39 (38%), Positives = 22/39 (55%)

Query: 72  IKPALKEKKLIISDRSLISGMAYSQFSSLELNLLATQSV 110
           IK   KEK   +S+ +  +G+A S  SS+E NL    S+
Sbjct: 6   IKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSI 44
>pdb|1INZ|A Chain A, Solution Structure Of The Epsin N-Terminal Homology (Enth)
           Domain Of Human Epsin
          Length = 148

 Score = 25.4 bits (54), Expect = 4.4
 Identities = 22/96 (22%), Positives = 44/96 (44%), Gaps = 8/96 (8%)

Query: 90  SGMAYSQFSSLELNLLATQSVLPAKIILLLIDKEGLKQRLSLKSLDKIE---NQGIEKLL 146
           S    S+ + L  N++A   ++   +I   ++  G   R   K++  +E     G E+  
Sbjct: 40  SSSLMSEIADLTYNVVAFSEIM--SMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSER-- 95

Query: 147 HIQQKLKTHAYALQEKFGCEVLELDAKESVKNLHEK 182
            + Q+ K + YA+Q     + ++ D K+   N+ EK
Sbjct: 96  -VSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREK 130
>pdb|1EYH|A Chain A, Crystal Structure Of The Epsin N-Terminal Homology (Enth)
           Domain At 1.56 Angstrom Resolution
          Length = 144

 Score = 25.4 bits (54), Expect = 4.4
 Identities = 22/96 (22%), Positives = 44/96 (44%), Gaps = 8/96 (8%)

Query: 90  SGMAYSQFSSLELNLLATQSVLPAKIILLLIDKEGLKQRLSLKSLDKIE---NQGIEKLL 146
           S    S+ + L  N++A   ++   +I   ++  G   R   K++  +E     G E+  
Sbjct: 22  SSSLMSEIADLTYNVVAFSEIM--SMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSER-- 77

Query: 147 HIQQKLKTHAYALQEKFGCEVLELDAKESVKNLHEK 182
            + Q+ K + YA+Q     + ++ D K+   N+ EK
Sbjct: 78  -VSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREK 112
>pdb|1H0A|A Chain A, Epsin Enth Bound To Ins(1,4,5)p3
          Length = 158

 Score = 25.4 bits (54), Expect = 4.4
 Identities = 22/96 (22%), Positives = 44/96 (44%), Gaps = 8/96 (8%)

Query: 90  SGMAYSQFSSLELNLLATQSVLPAKIILLLIDKEGLKQRLSLKSLDKIE---NQGIEKLL 146
           S    S+ + L  N++A   ++   +I   ++  G   R   K++  +E     G E+  
Sbjct: 36  SSSLMSEIADLTYNVVAFSEIM--SMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSER-- 91

Query: 147 HIQQKLKTHAYALQEKFGCEVLELDAKESVKNLHEK 182
            + Q+ K + YA+Q     + ++ D K+   N+ EK
Sbjct: 92  -VSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREK 126
>pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
 pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
          Length = 198

 Score = 24.6 bits (52), Expect = 7.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 3  VVLEGVDGAGKSTQVELLKD 22
          +V  G+D AGK+T + +LKD
Sbjct: 28 LVFLGLDNAGKTTLLHMLKD 47
>pdb|1AD3|A Chain A, Class 3 Aldehyde Dehydrogenase Complex With
           Nicotinamide-Adenine-Dinucleotide
 pdb|1AD3|B Chain B, Class 3 Aldehyde Dehydrogenase Complex With
           Nicotinamide-Adenine-Dinucleotide
          Length = 452

 Score = 24.6 bits (52), Expect = 7.5
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 7/40 (17%)

Query: 1   MYVVLEGVDGAGKSTQVELLKDRFKNALFTKEPGGTRMGE 40
           +Y+V++G    G     ELLK+RF + ++T   G T +G+
Sbjct: 161 LYLVVKG----GVPETTELLKERFDHIMYT---GSTAVGK 193
  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.317    0.135    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 912,650
Number of Sequences: 13198
Number of extensions: 31361
Number of successful extensions: 132
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 17
length of query: 191
length of database: 2,899,336
effective HSP length: 83
effective length of query: 108
effective length of database: 1,803,902
effective search space: 194821416
effective search space used: 194821416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)