BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646084|ref|NP_208266.1| lipopolysaccharide core
biosynthesis protein (kdtB) [Helicobacter pylori 26695]
(157 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GN8|A Chain A, Phosphopantetheine Adenylyltransferase ... 168 2e-43
pdb|1QJC|A Chain A, Phosphopantetheine Adenylytransferase F... 166 9e-43
pdb|1F9A|F Chain F, Crystal Structure Analysis Of Nmn Adeny... 33 0.015
pdb|1KAM|A Chain A, Structure Of Bacillus Subtilis Nicotini... 31 0.057
pdb|1LW7|A Chain A, Nadr Protein From Haemophilus Influenzae 31 0.057
pdb|1KKU|A Chain A, Crystal Structure Of Nuclear Human Nico... 31 0.074
pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltrans... 31 0.074
pdb|1GZU|A Chain A, Crystal Structure Of Human Nicotinamide... 29 0.22
pdb|1EJ2|A Chain A, Crystal Structure Of Methanobacterium T... 27 1.1
pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfata... 26 2.4
pdb|1K4K|A Chain A, Crystal Structure Of E. Coli Nicotinic ... 25 4.1
>pdb|1GN8|A Chain A, Phosphopantetheine Adenylyltransferase In Complex With
Mn2+ Atp From Escherichia Coli
pdb|1GN8|B Chain B, Phosphopantetheine Adenylyltransferase In Complex With
Mn2+ Atp From Escherichia Coli
pdb|1B6T|A Chain A, Phosphopantetheine Adenylyltransferase In Complex With 3'-
Dephospho-Coa From Escherichia Coli
pdb|1B6T|B Chain B, Phosphopantetheine Adenylyltransferase In Complex With 3'-
Dephospho-Coa From Escherichia Coli
Length = 159
Score = 168 bits (426), Expect = 2e-43
Identities = 75/151 (49%), Positives = 113/151 (74%)
Query: 1 MQKIGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMIQLATK 60
MQK IYPGTFDP+TNGHIDI+ R++++F+ +I+A+A S +K PMF+L+ER+ + Q AT
Sbjct: 1 MQKRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPSKKPMFTLEERVALAQQATA 60
Query: 61 SFKNVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMP 120
NVE V F L+AN A+ H VL+RGLR V+DFEYE+Q+ + N+ L ELE+++ MP
Sbjct: 61 HLGNVEVVGFSDLMANFARNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPELESVFLMP 120
Query: 121 TLQNAFISSSIVRSIIAHKGDASHLVPKEIY 151
+ + +FISSS+V+ + H+GD +H +P+ ++
Sbjct: 121 SKEWSFISSSLVKEVARHQGDVTHFLPENVH 151
>pdb|1QJC|A Chain A, Phosphopantetheine Adenylytransferase From Escherichia
Coli In Complex With 4'-Phosphopantetheine
pdb|1QJC|B Chain B, Phosphopantetheine Adenylytransferase From Escherichia
Coli In Complex With 4'-Phosphopantetheine
Length = 158
Score = 166 bits (421), Expect = 9e-43
Identities = 74/150 (49%), Positives = 112/150 (74%)
Query: 2 QKIGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMIQLATKS 61
QK IYPGTFDP+TNGHIDI+ R++++F+ +I+A+A S +K PMF+L+ER+ + Q AT
Sbjct: 1 QKRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPSKKPMFTLEERVALAQQATAH 60
Query: 62 FKNVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPT 121
NVE V F L+AN A+ H VL+RGLR V+DFEYE+Q+ + N+ L ELE+++ MP+
Sbjct: 61 LGNVEVVGFSDLMANFARNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPELESVFLMPS 120
Query: 122 LQNAFISSSIVRSIIAHKGDASHLVPKEIY 151
+ +FISSS+V+ + H+GD +H +P+ ++
Sbjct: 121 KEWSFISSSLVKEVARHQGDVTHFLPENVH 150
>pdb|1F9A|F Chain F, Crystal Structure Analysis Of Nmn Adenylyltransferase
From Methanococcus Jannaschii
pdb|1F9A|D Chain D, Crystal Structure Analysis Of Nmn Adenylyltransferase
From Methanococcus Jannaschii
pdb|1F9A|E Chain E, Crystal Structure Analysis Of Nmn Adenylyltransferase
From Methanococcus Jannaschii
pdb|1F9A|A Chain A, Crystal Structure Analysis Of Nmn Adenylyltransferase
From Methanococcus Jannaschii
pdb|1F9A|B Chain B, Crystal Structure Analysis Of Nmn Adenylyltransferase
From Methanococcus Jannaschii
pdb|1F9A|C Chain C, Crystal Structure Analysis Of Nmn Adenylyltransferase
From Methanococcus Jannaschii
Length = 168
Score = 33.1 bits (74), Expect = 0.015
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 5 GIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHS----SAKNPMFSLDERLKMIQLATK 60
G G F P GH+++I + +E +++I+ + + + +NP F+ ER+ MI + K
Sbjct: 3 GFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKSHTLENP-FTAGERILMITQSLK 61
Query: 61 SF 62
+
Sbjct: 62 DY 63
>pdb|1KAM|A Chain A, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAM|B Chain B, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAM|C Chain C, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAM|D Chain D, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|A Chain A, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|B Chain B, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|C Chain C, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|D Chain D, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|E Chain E, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
pdb|1KAQ|F Chain F, Structure Of Bacillus Subtilis Nicotinic Acid
Mononucleotide Adenylyl Transferase
Length = 194
Score = 31.2 bits (69), Expect = 0.057
Identities = 12/18 (66%), Positives = 15/18 (82%)
Query: 2 QKIGIYPGTFDPVTNGHI 19
+KIGI+ GTFDP NGH+
Sbjct: 7 KKIGIFGGTFDPPHNGHL 24
>pdb|1LW7|A Chain A, Nadr Protein From Haemophilus Influenzae
Length = 365
Score = 31.2 bits (69), Expect = 0.057
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 2 QKIGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLK 53
+K+G+ G F PV GHI+ I+ + ++L V V + ++ D + K
Sbjct: 2 KKVGVIFGKFYPVHTGHINXIYEAFSKVDELHVIVCSDTVRDLKLFYDSKXK 53
>pdb|1KKU|A Chain A, Crystal Structure Of Nuclear Human Nicotinamide
Mononucleotide Adenylyltransferase
Length = 279
Score = 30.8 bits (68), Expect = 0.074
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 9 GTFDPVTNGHIDIIHRSSE---------LFEKLIVAVAHSSAKNPMFSLDERLKMIQLAT 59
G+F+P+TN H+ + + + + + +I V + K + R+ M +LAT
Sbjct: 15 GSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGLIPAYHRVIMAELAT 74
Query: 60 KSFKNVECVAFEGL 73
K+ K VE +E L
Sbjct: 75 KNSKWVEVDTWESL 88
>pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
Bacillus Subtilis
pdb|1COZ|B Chain B, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
Bacillus Subtilis
Length = 129
Score = 30.8 bits (68), Expect = 0.074
Identities = 15/37 (40%), Positives = 26/37 (69%), Gaps = 1/37 (2%)
Query: 1 MQKIGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVA 37
M+K+ Y GTFD + GHI ++ R+ +L + L+VA++
Sbjct: 1 MKKVITY-GTFDLLHWGHIKLLERAKQLGDYLVVAIS 36
>pdb|1GZU|A Chain A, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
pdb|1GZU|B Chain B, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
pdb|1GZU|C Chain C, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
Length = 290
Score = 29.3 bits (64), Expect = 0.22
Identities = 19/74 (25%), Positives = 35/74 (46%), Gaps = 9/74 (12%)
Query: 9 GTFDPVTNGHIDIIHRSSE---------LFEKLIVAVAHSSAKNPMFSLDERLKMIQLAT 59
G+F+P+TN H+ + + + + + +I V + K + R+ +LAT
Sbjct: 26 GSFNPITNXHLRLFELAKDYXNGTGRYTVVKGIISPVGDAYKKKGLIPAYHRVIXAELAT 85
Query: 60 KSFKNVECVAFEGL 73
K+ K VE +E L
Sbjct: 86 KNSKWVEVDTWESL 99
>pdb|1EJ2|A Chain A, Crystal Structure Of Methanobacterium
Thermoautotrophicum Nicotinamide Mononucleotide
Adenylyltransferase With Bound Nad+
Length = 181
Score = 26.9 bits (58), Expect = 1.1
Identities = 16/58 (27%), Positives = 29/58 (49%), Gaps = 5/58 (8%)
Query: 5 GIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHS----SAKNPMFSLDERLKMIQLA 58
G+ G P GH+ +I E ++LI+ + + S ++P F+ ER+ M+ A
Sbjct: 6 GLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQLSHSIRDP-FTAGERVMMLTKA 62
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
Length = 435
Score = 25.8 bits (55), Expect = 2.4
Identities = 19/66 (28%), Positives = 28/66 (41%), Gaps = 13/66 (19%)
Query: 14 VTNGHIDIIH--------RSSELFEKLIVAVAHSSAKNPMFSLDERLKMIQLATKSFKNV 65
+ NG+ ++H R SEL KL + KNP F LK +A FK +
Sbjct: 339 LANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQF-----LKQGDVAIVKFKPI 393
Query: 66 ECVAFE 71
+ + E
Sbjct: 394 KPLCVE 399
>pdb|1K4K|A Chain A, Crystal Structure Of E. Coli Nicotinic Acid
Mononucleotide Adenylyltransferase
pdb|1K4K|B Chain B, Crystal Structure Of E. Coli Nicotinic Acid
Mononucleotide Adenylyltransferase
pdb|1K4K|C Chain C, Crystal Structure Of E. Coli Nicotinic Acid
Mononucleotide Adenylyltransferase
pdb|1K4K|D Chain D, Crystal Structure Of E. Coli Nicotinic Acid
Mononucleotide Adenylyltransferase
pdb|1K4M|A Chain A, Crystal Structure Of E.Coli Nicotinic Acid
Mononucleotide Adenylyltransferase Complexed To
Deamido-Nad
pdb|1K4M|B Chain B, Crystal Structure Of E.Coli Nicotinic Acid
Mononucleotide Adenylyltransferase Complexed To
Deamido-Nad
pdb|1K4M|C Chain C, Crystal Structure Of E.Coli Nicotinic Acid
Mononucleotide Adenylyltransferase Complexed To
Deamido-Nad
Length = 213
Score = 25.0 bits (53), Expect = 4.1
Identities = 17/69 (24%), Positives = 27/69 (38%), Gaps = 23/69 (33%)
Query: 6 IYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSS-----------------------AK 42
++ GTFDPV GH+ + + L V + ++ A
Sbjct: 7 LFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQPEANSVQRKHMLELAIAD 66
Query: 43 NPMFSLDER 51
P+F+LDER
Sbjct: 67 KPLFTLDER 75
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 840,754
Number of Sequences: 13198
Number of extensions: 28651
Number of successful extensions: 64
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 57
Number of HSP's gapped (non-prelim): 11
length of query: 157
length of database: 2,899,336
effective HSP length: 81
effective length of query: 76
effective length of database: 1,830,298
effective search space: 139102648
effective search space used: 139102648
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)