BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646086|ref|NP_208268.1| hypothetical protein
[Helicobacter pylori 26695]
         (218 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1I7F|A  Chain A, Crystal Structure Of The Hsp33 Domain W...    25  6.9
pdb|1HW7|A  Chain A, Hsp33, Heat Shock Protein With Redox-Re...    25  6.9
pdb|1KFQ|A  Chain A, Crystal Structure Of Exocytosis-Sensiti...    25  9.1
pdb|1M1J|A  Chain A, Crystal Structure Of Native Chicken Fib...    25  9.1
pdb|1EI3|A  Chain A, Crystal Structure Of Native Chicken Fib...    25  9.1

>pdb|1I7F|A Chain A, Crystal Structure Of The Hsp33 Domain With Constitutive
           Chaperone Activity
          Length = 292

 Score = 25.0 bits (53), Expect = 6.9
 Identities = 9/31 (29%), Positives = 20/31 (64%)

Query: 148 TLLSTDKTQALIIVRKNDIITGVYEEGQISI 178
           TL  T KT+ L+ +  N+++  +Y E ++++
Sbjct: 190 TLTETIKTEELLTLPANEVLWRLYHEEEVTV 220



>pdb|1HW7|A Chain A, Hsp33, Heat Shock Protein With Redox-Regulated Chaperone
           Activity
          Length = 255

 Score = 25.0 bits (53), Expect = 6.9
 Identities = 9/31 (29%), Positives = 20/31 (64%)

Query: 148 TLLSTDKTQALIIVRKNDIITGVYEEGQISI 178
           TL  T KT+ L+ +  N+++  +Y E ++++
Sbjct: 192 TLTETIKTEELLTLPANEVLWRLYHEEEVTV 222



>pdb|1KFQ|A Chain A, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
           Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
           Form
 pdb|1KFQ|B Chain B, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
           Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
           Form
 pdb|1KFI|A Chain A, Crystal Structure Of The Exocytosis-Sensitive
           Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
           Paramecium
 pdb|1KFI|B Chain B, Crystal Structure Of The Exocytosis-Sensitive
           Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
           Paramecium
          Length = 572

 Score = 24.6 bits (52), Expect = 9.1
 Identities = 16/44 (36%), Positives = 23/44 (51%), Gaps = 5/44 (11%)

Query: 101 SVSAIKKDENITANNTQKERILFGALSNPLLEGAIDKVSAKNFI 144
           S++ I  + N+   N      L GA  +    GA+DKV+AKN I
Sbjct: 328 SLAVIAANANLIFKNG-----LLGAARSMPTSGALDKVAAKNGI 366



>pdb|1M1J|A Chain A, Crystal Structure Of Native Chicken Fibrinogen With Two
           Different Bound Ligands
 pdb|1M1J|D Chain D, Crystal Structure Of Native Chicken Fibrinogen With Two
           Different Bound Ligands
          Length = 491

 Score = 24.6 bits (52), Expect = 9.1
 Identities = 11/35 (31%), Positives = 20/35 (56%)

Query: 182 LKALENGALNQIIQAKNLESNKILKAKVLSSSKAQ 216
           +KAL+N    Q+++ K LE +  +K +    S A+
Sbjct: 134 IKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCAR 168



>pdb|1EI3|A Chain A, Crystal Structure Of Native Chicken Fibrinogen
 pdb|1EI3|D Chain D, Crystal Structure Of Native Chicken Fibrinogen
          Length = 491

 Score = 24.6 bits (52), Expect = 9.1
 Identities = 11/35 (31%), Positives = 20/35 (56%)

Query: 182 LKALENGALNQIIQAKNLESNKILKAKVLSSSKAQ 216
           +KAL+N    Q+++ K LE +  +K +    S A+
Sbjct: 134 IKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCAR 168



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.315    0.134    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,007,593
Number of Sequences: 13198
Number of extensions: 37235
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 5
length of query: 218
length of database: 2,899,336
effective HSP length: 85
effective length of query: 133
effective length of database: 1,777,506
effective search space: 236408298
effective search space used: 236408298
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)