BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646087|ref|NP_208269.1| DNA helicase II (uvrD)
[Helicobacter pylori 26695]
(682 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3PJR|A Chain A, Helicase Substrate Complex >gi|2781090|... 369 e-103
pdb|1UAA|B Chain B, Structure Of The Rep Helicase-Single St... 318 1e-87
pdb|2PJR|F Chain F, Helicase Product Complex >gi|9257172|pd... 288 1e-78
pdb|1QHH|B Chain B, Structure Of Dna Helicase With Adpnp 201 2e-52
pdb|1QHH|D Chain D, Structure Of Dna Helicase With Adpnp 91 4e-19
pdb|1QHH|A Chain A, Structure Of Dna Helicase With Adpnp 88 4e-18
pdb|2PJR|B Chain B, Helicase Product Complex >gi|4930187|pd... 83 9e-17
pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vi... 31 0.40
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-S... 31 0.40
pdb|1A0C|A Chain A, Xylose Isomerase From Thermoanaerobacte... 28 3.3
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 27 5.7
pdb|1GHQ|C Chain C, Cr2-C3d Complex Structure >gi|14488495|... 27 5.7
pdb|2PTK| Chicken Src Tyrosine Kinase 27 5.7
pdb|1LY2|A Chain A, Crystal Structure Of Unliganded Human C... 27 5.7
pdb|1K7H|A Chain A, Crystal Structure Of Shrimp Alkaline Ph... 27 7.5
pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecti... 27 9.7
pdb|1QS2|A Chain A, Crystal Structure Of Vip2 With Nad 27 9.7
>pdb|3PJR|A Chain A, Helicase Substrate Complex
pdb|1PJR| Structure Of Dna Helicase
pdb|1QHG|A Chain A, Structure Of Dna Helicase Mutant With Adpnp
Length = 724
Score = 369 bits (946), Expect = e-103
Identities = 249/693 (35%), Positives = 374/693 (53%), Gaps = 49/693 (7%)
Query: 6 KSILDHLNGAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGVCGVPSENTLTLTFT 65
+ +L HLN Q+ A +GPLLI+AGAGSGKT+ LT R+AYL+ V N L +TFT
Sbjct: 6 EQLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFT 65
Query: 66 NKASKEMQERALKLLKNQALIPPLLCTFHRFGLLFLRQHMNLLKRACDFSVLDSDE---- 121
NKA++EM+ER LL A + TFH + LR+ ++ + +FS+LD +
Sbjct: 66 NKAAREMRERVQSLLGGAAE-DVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSV 124
Query: 122 VKTLCKQLKIS-------NFRASISQIKNGMM---DLSMQDSECYK-----AYELYQNAL 166
+KT+ K+ I +IS KN ++ + + S Y+ Y+ YQ L
Sbjct: 125 MKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEYQQRL 184
Query: 167 KKDNLVDFDDLLFLSLKILQDNETIAKETSERYHYIMVDEYQDTNALQLEFLKKLSFTHH 226
+++ +DFDDL+ ++++ + ++ YI +DEYQDTN Q +KKL+
Sbjct: 185 LRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQ 244
Query: 227 NLCVVGDDDQSIYGFRGADISNILNFSKHFKGAKIVKLETNYRSSAEILACANSLISHNQ 286
N+C VGD DQSIY +RGADI NIL+F + + AK++ LE NYRS+ IL AN +I HN
Sbjct: 245 NICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNV 304
Query: 287 HRHIKTLQSFKGSHKSVVCKEYLTQKEESLDVAYQIKALLKKGE-NLENIAILYRLNGLS 345
+R K + + K ++ E + + +E+ VA +I+ +++GE + A+LYR N S
Sbjct: 305 NRKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQS 364
Query: 346 RSIEESLNALNIPYRLIGALSFYERAEIKDALAFMHLVAKKDDRFFIKRVLNKPPRGLGK 405
R +EE L NIPY+++G L FY+R EIKD LA++ ++A DD + R++N P RG+G
Sbjct: 365 RVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGA 424
Query: 406 ITQEWIFSLLDEEGLNLEEALKLGAFK-DKLNPKNEYALKQFIAMIGRLREAFE-ISVEE 463
T + + + L+L EA LG + L K AL F + + + + E +SV E
Sbjct: 425 STIDKLVRYAADHELSLFEA--LGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTE 482
Query: 464 FCSRFLEETNLLKSYEKEDNYEEREGF--VKELLTLVKEYFKTNPTHSLLDFLNESVL-- 519
L+++ + + E E + + E L++ K + + SL+ FL + L
Sbjct: 483 LVEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALIS 542
Query: 520 ---DAHNTENAQK---VSCMSVHMSKGLEFKHVFVIGLEEGFFPH-RGFNQESDLEEERR 572
+ TE A + V M++H +KGLEF VF+IG+EEG FPH R + ++EEERR
Sbjct: 543 DLDELDGTEQAAEGDAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERR 602
Query: 573 LAYVAITRAKEELQLSYVKERSYFGRKISCSPSVFLEE--AQLL--------NQDNPPKQ 622
LAYV ITRA+EEL L+ + R+ FG PS FL E A LL P
Sbjct: 603 LAYVGITRAEEELVLTSAQMRTLFGNIQMDPPSRFLNEIPAHLLETASRRQAGASRPAVS 662
Query: 623 DHQKDAPI---KVGDLIRHKIFGTGRVLGVEKG 652
Q + KVGD H+ +G G V+ V G
Sbjct: 663 RPQASGAVGSWKVGDRANHRKWGIGTVVSVRGG 695
>pdb|1UAA|B Chain B, Structure Of The Rep Helicase-Single Stranded Dna Complex
At 3.0 Angstroms Resolution
pdb|1UAA|A Chain A, Structure Of The Rep Helicase-Single Stranded Dna Complex
At 3.0 Angstroms Resolution
Length = 673
Score = 318 bits (815), Expect = 1e-87
Identities = 217/635 (34%), Positives = 327/635 (51%), Gaps = 41/635 (6%)
Query: 12 LNGAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGVCGVPSENTLTLTFTNKASKE 71
LN Q+ A + GP L+LAGAGSGKT+ +T+++A+LI CG + + +TFTNKA++E
Sbjct: 3 LNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAARE 62
Query: 72 MQERALKLLKNQALIPPLLCTFHRFGLLFLRQHMNLLKRACDFSVLDSDEVKTLCKQLK- 130
M+ER + L + ++ TFH GL +++ L +FS+ D + L K+L
Sbjct: 63 MKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTE 122
Query: 131 ---------ISNFRASISQIKNGMMDLSM--------QDSECYKAYELYQNALKKDNLVD 173
+ ++IS KN + S +D Y LY LK N++D
Sbjct: 123 GLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACNVLD 182
Query: 174 FDDLLFLSLKILQDNETIAKETSERYHYIMVDEYQDTNALQLEFLKKLSFTHHNLCVVGD 233
FDDL+ L +LQ NE + K + Y++VDEYQDTN Q E +K L + VVGD
Sbjct: 183 FDDLILLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGD 242
Query: 234 DDQSIYGFRGADISNILNFSKHFKGAKIVKLETNYRSSAEILACANSLISHNQHRHIKTL 293
DDQSIY +RGA N++ S+ F K++KLE NYRSS IL AN LI++N H K L
Sbjct: 243 DDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILIANNPHVFEKRL 302
Query: 294 QSFKGSHKSVVCKEYLTQKEESLDVAYQIKA--LLKKGENLENIAILYRLNGLSRSIEES 351
S G + ++ E+ V ++ A + K + ++ AILYR N SR E+
Sbjct: 303 FSELGYGAELKVLSANNEEHEAERVTGELIAHHFVNKTQ-YKDYAILYRGNHQSRVFEKF 361
Query: 352 LNALNIPYRLIGALSFYERAEIKDALAFMHLVAKKDDRFFIKRVLNKPPRGLGKITQEWI 411
L IPY++ G SF+ R EIKD LA++ ++ DD R++N P R +G T
Sbjct: 362 LMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPAT---- 417
Query: 412 FSLLDEEGLNLEEALKLGAF----KDKLNPKNEYALKQF---IAMIGRLREAFEI-SVEE 463
L E + +++ +F L+ + AL +F +A I RL E I +V +
Sbjct: 418 LKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRD 477
Query: 464 FCSRFLEETNLLKSYEKEDNYEEREGFVKELLTLVKEYFKTNPTHSLLDF--------LN 515
E+ L ++ E R V +L + + E + + + L
Sbjct: 478 LIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLR 537
Query: 516 ESVLDAHNTENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPHRGFNQESDLEEERRLAY 575
+ + + E +V M++H SKGLEF +V+++G+EEGF PH+ E +++EERRLAY
Sbjct: 538 DMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDEDNIDEERRLAY 597
Query: 576 VAITRAKEELQLSYVKERSYFGRKISCSPSVFLEE 610
V ITRA++EL + KER +G + PS FL E
Sbjct: 598 VGITRAQKELTFTLCKERRQYGELVRPEPSRFLLE 632
>pdb|2PJR|F Chain F, Helicase Product Complex
pdb|2PJR|A Chain A, Helicase Product Complex
Length = 548
Score = 288 bits (738), Expect = 1e-78
Identities = 187/538 (34%), Positives = 294/538 (53%), Gaps = 27/538 (5%)
Query: 6 KSILDHLNGAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGVCGVPSENTLTLTFT 65
+ +L HLN Q+ A +GPLLI+AGAGSGKT+ LT R+AYL+ V N L +TFT
Sbjct: 6 EQLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFT 65
Query: 66 NKASKEMQERALKLLKNQALIPPLLCTFHRFGLLFLRQHMNLLKRACDFSVLDSDE---- 121
NKA++EM+ER LL A + TFH + LR+ ++ + +FS+LD +
Sbjct: 66 NKAAREMRERVQSLLGGAAE-DVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSV 124
Query: 122 VKTLCKQLKIS-------NFRASISQIKNGMM---DLSMQDSECYK-----AYELYQNAL 166
+KT+ K+ I +IS KN ++ + + S Y+ Y+ YQ L
Sbjct: 125 MKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEYQQRL 184
Query: 167 KKDNLVDFDDLLFLSLKILQDNETIAKETSERYHYIMVDEYQDTNALQLEFLKKLSFTHH 226
+++ +DFDDL+ ++++ + ++ YI +DEYQDTN Q +KKL+
Sbjct: 185 LRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQ 244
Query: 227 NLCVVGDDDQSIYGFRGADISNILNFSKHFKGAKIVKLETNYRSSAEILACANSLISHNQ 286
N+C VGD DQSIY +RGADI NIL+F + + AK++ LE NYRS+ IL AN +I HN
Sbjct: 245 NICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNV 304
Query: 287 HRHIKTLQSFKGSHKSVVCKEYLTQKEESLDVAYQIKALLKKGE-NLENIAILYRLNGLS 345
+R K + + K ++ E + + +E+ VA +I+ +++GE + A+LYR N S
Sbjct: 305 NRKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQS 364
Query: 346 RSIEESLNALNIPYRLIGALSFYERAEIKDALAFMHLVAKKDDRFFIKRVLNKPPRGLGK 405
R +EE L NIPY+++G L FY+R EIKD LA++ ++A DD + R++N P RG+G
Sbjct: 365 RVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGA 424
Query: 406 ITQEWIFSLLDEEGLNLEEALKLGAFK-DKLNPKNEYALKQFIAMIGRLREAFE-ISVEE 463
T + + + L+L EA LG + L K AL F + + + + E +SV E
Sbjct: 425 STIDKLVRYAADHELSLFEA--LGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTE 482
Query: 464 FCSRFLEETNLLKSYEKEDNYEEREGF--VKELLTLVKEYFKTNPTHSLLDFLNESVL 519
L+++ + + E E + + E L++ K + + SL+ FL + L
Sbjct: 483 LVEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLAL 540
>pdb|1QHH|B Chain B, Structure Of Dna Helicase With Adpnp
Length = 273
Score = 201 bits (511), Expect = 2e-52
Identities = 101/250 (40%), Positives = 155/250 (61%), Gaps = 1/250 (0%)
Query: 159 YELYQNALKKDNLVDFDDLLFLSLKILQDNETIAKETSERYHYIMVDEYQDTNALQLEFL 218
Y+ YQ L +++ +DFDDL+ ++++ + ++ YI +DEYQDTN Q +
Sbjct: 10 YQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLV 69
Query: 219 KKLSFTHHNLCVVGDDDQSIYGFRGADISNILNFSKHFKGAKIVKLETNYRSSAEILACA 278
KKL+ N+C VGD DQSIY +RGADI NIL+F + + AK++ LE NYRS+ IL A
Sbjct: 70 KKLAERFQNICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAA 129
Query: 279 NSLISHNQHRHIKTLQSFKGSHKSVVCKEYLTQKEESLDVAYQIKALLKKGE-NLENIAI 337
N +I HN +R K + + K ++ E + + +E+ VA +I+ +++GE + A+
Sbjct: 130 NEVIEHNVNRKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAV 189
Query: 338 LYRLNGLSRSIEESLNALNIPYRLIGALSFYERAEIKDALAFMHLVAKKDDRFFIKRVLN 397
LYR N SR +EE L NIPY+++G L FY+R EIKD LA++ ++A DD + R++N
Sbjct: 190 LYRTNAQSRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIIN 249
Query: 398 KPPRGLGKIT 407
P RG+G T
Sbjct: 250 VPKRGIGAST 259
>pdb|1QHH|D Chain D, Structure Of Dna Helicase With Adpnp
Length = 169
Score = 90.9 bits (224), Expect = 4e-19
Identities = 59/137 (43%), Positives = 75/137 (54%), Gaps = 14/137 (10%)
Query: 530 VSCMSVHMSKGLEFKHVFVIGLEEGFFPH-RGFNQESDLEEERRLAYVAITRAKEELQLS 588
V M++H +KGLEF VF+IG+EEG FPH R + ++EEERRLAYV ITRA+EEL L+
Sbjct: 4 VMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERRLAYVGITRAEEELVLT 63
Query: 589 YVKERSYFGRKISCSPSVFLEE--AQLL--------NQDNPPKQDHQKDAPI---KVGDL 635
+ R+ FG PS FL E A LL P Q + KVGD
Sbjct: 64 SAQMRTLFGNIQMDPPSRFLNEIPAHLLETASRRQAGASRPAVSRPQASGAVGSWKVGDR 123
Query: 636 IRHKIFGTGRVLGVEKG 652
H+ +G G V+ V G
Sbjct: 124 ANHRKWGIGTVVSVRGG 140
>pdb|1QHH|A Chain A, Structure Of Dna Helicase With Adpnp
Length = 167
Score = 87.8 bits (216), Expect = 4e-18
Identities = 54/130 (41%), Positives = 78/130 (59%), Gaps = 5/130 (3%)
Query: 6 KSILDHLNGAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGVCGVPSENTLTLTFT 65
+ +L HLN Q+ A +GPLLI+AGAGSGKT+ LT R+AYL+ V N L +TFT
Sbjct: 6 EQLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFT 65
Query: 66 NKASKEMQERALKLLKNQALIPPLLCTFHRFGLLFLRQHMNLLKRACDFSVLDSDE---- 121
NKA++EM+ER LL A + TFH + LR+ ++ + +FS+LD +
Sbjct: 66 NKAAREMRERVQSLL-GGAAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSV 124
Query: 122 VKTLCKQLKI 131
+KT+ K+ I
Sbjct: 125 MKTILKEKNI 134
>pdb|2PJR|B Chain B, Helicase Product Complex
pdb|2PJR|G Chain G, Helicase Product Complex
Length = 95
Score = 83.2 bits (204), Expect = 9e-17
Identities = 44/82 (53%), Positives = 56/82 (67%), Gaps = 1/82 (1%)
Query: 530 VSCMSVHMSKGLEFKHVFVIGLEEGFFPH-RGFNQESDLEEERRLAYVAITRAKEELQLS 588
V M++H +KGLEF VF+IG+EEG FPH R + ++EEERRLAYV ITRA+EEL L+
Sbjct: 4 VMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERRLAYVGITRAEEELVLT 63
Query: 589 YVKERSYFGRKISCSPSVFLEE 610
+ R+ FG PS FL E
Sbjct: 64 SAQMRTLFGNIQMDPPSRFLNE 85
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 31.2 bits (69), Expect = 0.40
Identities = 16/49 (32%), Positives = 26/49 (52%)
Query: 631 KVGDLIRHKIFGTGRVLGVEKGLSGLCLKINCGGNVYDKISEKFVEKVD 679
K+GD +I G+ G++ L C N GG+V D+IS + +E +
Sbjct: 40 KIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAE 88
>pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
Length = 435
Score = 31.2 bits (69), Expect = 0.40
Identities = 16/49 (32%), Positives = 26/49 (52%)
Query: 631 KVGDLIRHKIFGTGRVLGVEKGLSGLCLKINCGGNVYDKISEKFVEKVD 679
K+GD +I G+ G++ L C N GG+V D+IS + +E +
Sbjct: 105 KIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAE 153
>pdb|1A0C|A Chain A, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
pdb|1A0C|B Chain B, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
pdb|1A0C|C Chain C, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
pdb|1A0C|D Chain D, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
Length = 438
Score = 28.1 bits (61), Expect = 3.3
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 11/113 (9%)
Query: 482 DNYEEREGFVKELLTLVKEYFKTNPTHSLLDFLN-----ESVLDAHNTENAQKVSCMSVH 536
D E + ++ ++K+Y KT+ T L N V A + NA + +
Sbjct: 109 DTLRETNKNLDTIVAMIKDYLKTSKTKVLWGTANLFSNPRFVHGASTSCNADVFAYSAAQ 168
Query: 537 MSKGLEF------KHVFVIGLEEGFFPHRGFNQESDLEEERRLAYVAITRAKE 583
+ K LE ++ G EG+ + E +L+ R ++A+ AKE
Sbjct: 169 VKKALEITKELGGENYVFWGGREGYETLLNTDMEFELDNFARFLHMAVDYAKE 221
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 27.3 bits (59), Expect = 5.7
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 119 SDEVKTLCKQLKISNFRASISQIKNGMM-DLSMQDSECYKAYELYQNALKKDNLVDFDDL 177
S+E + L K+L+I I K+ ++ LS ++ E K ++ + + ++
Sbjct: 286 SEEGRGLLKKLQIP-----IEPKKDDIIHSLSQEEKELLKRIQI-----DSSDFLSTEEK 335
Query: 178 LFLSLKILQDNETIAKETSERYHYIMVDEYQDTNALQLEFLKKL 221
FL + +++++E E + I VD + + EFLKKL
Sbjct: 336 EFLKKLQIDIRDSLSEEEKELLNRIQVDSSNPLSEKEKEFLKKL 379
>pdb|1GHQ|C Chain C, Cr2-C3d Complex Structure
pdb|1GHQ|B Chain B, Cr2-C3d Complex Structure
Length = 134
Score = 27.3 bits (59), Expect = 5.7
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 629 PIKVGDLIRHKIFGTGRVLGVEKGLSGLCLKINCGGNVYDKISEK 673
PI VG +IR+ GT R++G EK L LC+ + +DK + K
Sbjct: 21 PIAVGTVIRYSCSGTFRLIG-EKSL--LCITKDKVDGTWDKPAPK 62
>pdb|2PTK| Chicken Src Tyrosine Kinase
Length = 453
Score = 27.3 bits (59), Expect = 5.7
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 482 DNYEEREGFVKELLTLVKEYFKTNPTHSLLDFLNESVLDAHNTENAQKVSCMSVHMSKGL 541
D+ + E + ++ E NP + FL V ++ T+ A +S +KGL
Sbjct: 61 DSIQAEEWYFGKITRRESERLLLNPENPRGTFL---VRESETTKGAYCLSVSDFDNAKGL 117
Query: 542 EFKHVFVIGLEEGFFPHRGFNQESDLEE 569
KH + L+ G F Q S L++
Sbjct: 118 NVKHYKIRKLDSGGFYITSRTQFSSLQQ 145
>pdb|1LY2|A Chain A, Crystal Structure Of Unliganded Human Cd21 Scr1-Scr2
(Complement Receptor Type 2)
Length = 130
Score = 27.3 bits (59), Expect = 5.7
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 629 PIKVGDLIRHKIFGTGRVLGVEKGLSGLCLKINCGGNVYDKISEK 673
PI VG +IR+ GT R++G EK L LC+ + +DK + K
Sbjct: 21 PIAVGTVIRYSCSGTFRLIG-EKSL--LCITKDKVDGTWDKPAPK 62
>pdb|1K7H|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase
pdb|1K7H|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase
Length = 476
Score = 26.9 bits (58), Expect = 7.5
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 172 VDFDDLLFLSLKILQDNETIAKETSERYHYIMVDEYQDTNALQLEF 217
+D ++ + ++L + ETI T++ H + + Y D N L+F
Sbjct: 331 LDMEEAVSMALSMTDPEETIILVTADHGHTLTITGYADRNTDILDF 376
>pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|B Chain B, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|C Chain C, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|D Chain D, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
Length = 462
Score = 26.6 bits (57), Expect = 9.7
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 466 SRFLEETNLLKSYEKEDNYEEREGF---VKELLTLVKEYFKTNPTHSLLDFLN 515
+ FL+ N +K+ KE + F +K+L + K + KTN ++S++ + N
Sbjct: 95 NNFLDNKNDIKTNYKEITFSMAGSFEDEIKDLKEIDKMFDKTNLSNSIITYKN 147
>pdb|1QS2|A Chain A, Crystal Structure Of Vip2 With Nad
Length = 401
Score = 26.6 bits (57), Expect = 9.7
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 466 SRFLEETNLLKSYEKEDNYEEREGF---VKELLTLVKEYFKTNPTHSLLDFLN 515
+ FL+ N +K+ KE + F +K+L + K + KTN ++S++ + N
Sbjct: 34 NNFLDNKNDIKTNYKEITFSMAGSFEDEIKDLKEIDKMFDKTNLSNSIITYKN 86
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.137 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,725,377
Number of Sequences: 13198
Number of extensions: 154044
Number of successful extensions: 395
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 18
length of query: 682
length of database: 2,899,336
effective HSP length: 95
effective length of query: 587
effective length of database: 1,645,526
effective search space: 965923762
effective search space used: 965923762
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)