BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646088|ref|NP_208270.1| hypothetical protein
[Helicobacter pylori 26695]
(844 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1-Domain Of... 33 0.10
pdb|1GUL|A Chain A, Human Glutathione Transferase A4-4 Comp... 33 0.17
pdb|1IUF|A Chain A, Low Resolution Solution Structure Of Th... 31 0.65
pdb|2MHR| Myohemerythrin >gi|3892012|pdb|1A7D| Chloromet... 31 0.65
pdb|1A7E| Hydroxomet Myohemerythrin From Themiste Zosteri... 30 0.85
pdb|1QHM|A Chain A, Escherichia Coli Pyruvate Formate Lyase... 30 1.1
pdb|1QGX|A Chain A, X-Ray Structure Of Yeast Hal2p >gi|1697... 30 1.1
pdb|1CM5|A Chain A, Crystal Structure Of C418a,C419a Mutant... 30 1.1
pdb|1H16|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Comp... 30 1.1
pdb|1JYB|A Chain A, Crystal Structure Of Rubrerythrin >gi|2... 28 3.2
pdb|1RYT| Rubrerythrin 28 3.2
pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a-Domain O... 28 4.2
pdb|1FJG|T Chain T, Structure Of The Thermus Thermophilus 3... 28 5.5
pdb|1IBL|T Chain T, Structure Of The Thermus Thermophilus 3... 28 5.5
pdb|1I94|T Chain T, Crystal Structures Of The Small Ribosom... 28 5.5
pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crysta... 27 7.2
pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragm... 27 9.4
pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Com... 27 9.4
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1-Domain Of Hop In Complex
With A Hsc70-Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1-Domain Of Hop In Complex
With A Hsc70-Peptide
Length = 118
Score = 33.5 bits (75), Expect = 0.10
Identities = 17/49 (34%), Positives = 27/49 (54%)
Query: 474 QGLKALENKRLKKALSFFDLSLKNSPNNALLHYNTGLIYAQLENYHKAY 522
+G KAL + AL + ++K P+N +L+ N YA+ +Y KAY
Sbjct: 10 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAY 58
>pdb|1GUL|A Chain A, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUL|B Chain B, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUL|C Chain C, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUL|D Chain D, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUL|E Chain E, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUL|F Chain F, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUL|G Chain G, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUL|H Chain H, Human Glutathione Transferase A4-4 Complex With Iodobenzyl
Glutathione
pdb|1GUM|A Chain A, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|B Chain B, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|C Chain C, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|D Chain D, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|E Chain E, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|F Chain F, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|G Chain G, Human Glutathione Transferase A4-4 Without Ligands
pdb|1GUM|H Chain H, Human Glutathione Transferase A4-4 Without Ligands
Length = 222
Score = 32.7 bits (73), Expect = 0.17
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 399 KERFWNTQYFEGKRDFIYRLLFYYAPFKVLDS--KETLGVIEEGLFLLDSDAQKDLEGAS 456
KER Y EG D + L+ + PF D KE + + ++ + +K L G
Sbjct: 87 KERTLIDMYVEGTLDLLELLIMH--PFLKPDDQQKEVVNMAQKAIIRYFPVFEKILRGHG 144
Query: 457 LAFKRGRLMAIADKNALQGLKALENK 482
+F G +++AD LQ + ALE K
Sbjct: 145 QSFLVGNQLSLADVILLQTILALEEK 170
>pdb|1IUF|A Chain A, Low Resolution Solution Structure Of The Two Dna-Binding
Domains In Shizosaccharomices Pombe Abp1 Protein
Length = 144
Score = 30.8 bits (68), Expect = 0.65
Identities = 23/72 (31%), Positives = 33/72 (44%), Gaps = 7/72 (9%)
Query: 541 FAILASHFTHEDTTEFLREITENFYSQDFSSPTQKALLSSLIAYLNYRTNWDMDWLKNAP 600
F L + +D E+ RE + +D S P+ +LSS +YL+ D +N P
Sbjct: 24 FFQLQNRSGQQDLIEWFREK----FGKDISQPSVSQILSSKYSYLDNTVEKPWDVKRNRP 79
Query: 601 KKLPFYYALEAA 612
K P LEAA
Sbjct: 80 PKYPL---LEAA 88
>pdb|2MHR| Myohemerythrin
pdb|1A7D| Chloromet Myohemerythrin From Themiste Zostericola
Length = 118
Score = 30.8 bits (68), Expect = 0.65
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
Query: 510 LIYAQLENYHKAYFH-FLRAFHLNSADYLSAVFAILASHFTHE----DTTEFLREITENF 564
+ Y QL+ HK F NSA L+ + + +HFTHE D ++ +
Sbjct: 16 VFYEQLDEEHKKIFKGIFDCIRDNSAPNLATLVKVTTNHFTHEEAMMDAAKYSEVVPHKK 75
Query: 565 YSQDFSSPTQKALLSSLIAYLNYR-TNWDMDWLKNAPKKLPFYY 607
+DF + L A ++ + ++ +WL N K F Y
Sbjct: 76 MHKDFLEK-----IGGLSAPVDAKNVDYCKEWLVNHIKGTDFKY 114
>pdb|1A7E| Hydroxomet Myohemerythrin From Themiste Zostericola
Length = 118
Score = 30.4 bits (67), Expect = 0.85
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 510 LIYAQLENYHKAYFH-FLRAFHLNSADYLSAVFAILASHFTHE----DTTEFLREITENF 564
+ Y QL+ HK F NSA L+ + + +HFTHE D ++ +
Sbjct: 16 VFYEQLDEEHKKIFKGIFDCIRDNSAPNLATLVKVTTNHFTHEEAMMDAAKYSEVVPHKK 75
Query: 565 YSQDFSSPTQKALLSSLIAYLNYRTNWDMDWLKNAPKK 602
+DF ++Y W+++ +K K
Sbjct: 76 MHKDFLEKIGGLSAPVDAKNVDYCKEWNVNHIKGTDFK 113
>pdb|1QHM|A Chain A, Escherichia Coli Pyruvate Formate Lyase Large Domain
pdb|1QHM|B Chain B, Escherichia Coli Pyruvate Formate Lyase Large Domain
Length = 624
Score = 30.0 bits (66), Expect = 1.1
Identities = 33/145 (22%), Positives = 57/145 (38%), Gaps = 27/145 (18%)
Query: 702 LEQKIASLEEGEAPNDWLENLALVSLFQGQY--------------EKASALYQNLISGLK 747
L +K+A+ EG DW + + Q Y E + L+ ++ G+K
Sbjct: 3 LNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATEATTTLWDKVMEGVK 62
Query: 748 -DNETHLKILAGLTYIAQNNYDSAALWLELGKLDDPNNENIRYALGLLYQRKGDLKSALN 806
+N TH + ++D+A N+ + +GL Q + LK AL
Sbjct: 63 LENRTHAPV----------DFDTAVASTITSHDAGYINKQLEKIVGL--QTEAPLKRALI 110
Query: 807 HFLAIKTSDFSSPYFDFEIDANLLK 831
F IK + S ++ E+D + K
Sbjct: 111 PFGGIKMIEGSCKAYNRELDPMIKK 135
>pdb|1QGX|A Chain A, X-Ray Structure Of Yeast Hal2p
pdb|1KA0|A Chain A, The Papase Hal2p Complexed With A Sodium Ion And The
Reaction Product Amp
pdb|1K9Y|A Chain A, The Papase Hal2p Complexed With Magnesium Ions And
Reaction Products: Amp And Inorganic Phosphate
pdb|1KA1|A Chain A, The Papase Hal2p Complexed With Calcium And Magnesium Ions
And Reaction Substrate: Pap
pdb|1K9Z|A Chain A, The Papase Hal2p Complexed With Zinc Ions
Length = 357
Score = 30.0 bits (66), Expect = 1.1
Identities = 26/102 (25%), Positives = 47/102 (45%), Gaps = 7/102 (6%)
Query: 359 LKASEALKLASHTKEDTLLANSFYPIKPTINPV--FLD----KERAKERFWNTQYFEGKR 412
+KA++ + ++ K+D L N +P+K ++ V +D + K RFW +G +
Sbjct: 90 IKANDEVYNKNYKKDDFLFTNDQFPLK-SLEDVRQIIDFGNYEGGRKGRFWCLDPIDGTK 148
Query: 413 DFIYRLLFYYAPFKVLDSKETLGVIEEGLFLLDSDAQKDLEG 454
F+ F ++D LG I +L S +DL+G
Sbjct: 149 GFLRGEQFAVCLALIVDGVVQLGCIGCPNLVLSSYGAQDLKG 190
>pdb|1CM5|A Chain A, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
pdb|1CM5|B Chain B, Crystal Structure Of C418a,C419a Mutant Of Pfl From E.Coli
Length = 759
Score = 30.0 bits (66), Expect = 1.1
Identities = 33/145 (22%), Positives = 57/145 (38%), Gaps = 27/145 (18%)
Query: 702 LEQKIASLEEGEAPNDWLENLALVSLFQGQY--------------EKASALYQNLISGLK 747
L +K+A+ EG DW + + Q Y E + L+ ++ G+K
Sbjct: 3 LNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATEATTTLWDKVMEGVK 62
Query: 748 -DNETHLKILAGLTYIAQNNYDSAALWLELGKLDDPNNENIRYALGLLYQRKGDLKSALN 806
+N TH + ++D+A N+ + +GL Q + LK AL
Sbjct: 63 LENRTHAPV----------DFDTAVASTITSHDAGYINKQLEKIVGL--QTEAPLKRALI 110
Query: 807 HFLAIKTSDFSSPYFDFEIDANLLK 831
F IK + S ++ E+D + K
Sbjct: 111 PFGGIKMIEGSCKAYNRELDPMIKK 135
>pdb|1H16|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
And Coa
pdb|1H17|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Coa And
The Substrate Analog Oxamate
pdb|1H18|A Chain A, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|1H18|B Chain B, Pyruvate Formate-Lyase (E.Coli) In Complex With Pyruvate
pdb|3PFL|A Chain A, Crystal Structure Of Pfl From E.Coli In Complex With
Substrate Analogue Oxamate
pdb|3PFL|B Chain B, Crystal Structure Of Pfl From E.Coli In Complex With
Substrate Analogue Oxamate
pdb|2PFL|A Chain A, Crystal Structure Of Pfl From E.Coli
pdb|2PFL|B Chain B, Crystal Structure Of Pfl From E.Coli
Length = 759
Score = 30.0 bits (66), Expect = 1.1
Identities = 33/145 (22%), Positives = 57/145 (38%), Gaps = 27/145 (18%)
Query: 702 LEQKIASLEEGEAPNDWLENLALVSLFQGQY--------------EKASALYQNLISGLK 747
L +K+A+ EG DW + + Q Y E + L+ ++ G+K
Sbjct: 3 LNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATEATTTLWDKVMEGVK 62
Query: 748 -DNETHLKILAGLTYIAQNNYDSAALWLELGKLDDPNNENIRYALGLLYQRKGDLKSALN 806
+N TH + ++D+A N+ + +GL Q + LK AL
Sbjct: 63 LENRTHAPV----------DFDTAVASTITSHDAGYINKQLEKIVGL--QTEAPLKRALI 110
Query: 807 HFLAIKTSDFSSPYFDFEIDANLLK 831
F IK + S ++ E+D + K
Sbjct: 111 PFGGIKMIEGSCKAYNRELDPMIKK 135
>pdb|1JYB|A Chain A, Crystal Structure Of Rubrerythrin
pdb|1LKM|A Chain A, Crystal Structure Of Desulfovibrio Vulgaris Rubrerythrin
All-Iron(Iii) Form
pdb|1LKO|A Chain A, Crystal Structure Of Desulfovibrio Vulgaris Rubrerythrin
All-Iron(Ii) Form
pdb|1LKP|A Chain A, Crystal Structure Of Desulfovibrio Vulgaris Rubrerythrin
All-Iron(Ii) Form, Azide Adduct
pdb|1B71|A Chain A, Rubrerythrin
pdb|1DVB|A Chain A, Rubrerythrin
Length = 191
Score = 28.5 bits (62), Expect = 3.2
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 156 QGQKDEALHLFDKAASFSQGIASHNLGVIKFKEKDFNGALDLFDSSIASKENASVSAIDA 215
Q +KD + + D A + H + KF E + F + I + +A++ A A
Sbjct: 33 QAKKDGFVQISDIFAETADQEREHAKRLFKFLEGGDLEIVAAFPAGIIADTHANLIASAA 92
Query: 216 LVSAYHLQDEDLYYHYLKIARDTLYKDYKKSFYSYAYA 253
H + ++Y + +IAR+ Y++ + F S A A
Sbjct: 93 ---GEHHEYTEMYPSFARIAREEGYEEIARVFASIAVA 127
>pdb|1RYT| Rubrerythrin
Length = 190
Score = 28.5 bits (62), Expect = 3.2
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 156 QGQKDEALHLFDKAASFSQGIASHNLGVIKFKEKDFNGALDLFDSSIASKENASVSAIDA 215
Q +KD + + D A + H + KF E + F + I + +A++ A A
Sbjct: 32 QAKKDGFVQISDIFAETADQEREHAKRLFKFLEGGDLEIVAAFPAGIIADTHANLIASAA 91
Query: 216 LVSAYHLQDEDLYYHYLKIARDTLYKDYKKSFYSYAYA 253
H + ++Y + +IAR+ Y++ + F S A A
Sbjct: 92 ---GEHHEYTEMYPSFARIAREEGYEEIARVFASIAVA 126
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a-Domain Of Hop In Complex
With The Hsp90-Peptide Meevd
Length = 131
Score = 28.1 bits (61), Expect = 4.2
Identities = 19/87 (21%), Positives = 36/87 (40%), Gaps = 9/87 (10%)
Query: 133 DSLKRNDENQVDAIMKKASLLYEQGQKDEALHLFDKAASFSQ---------GIASHNLGV 183
D K D + I +A++ +E+G ++ L +KA + A +G
Sbjct: 28 DKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87
Query: 184 IKFKEKDFNGALDLFDSSIASKENASV 210
FKE+ + A+ ++ S+A V
Sbjct: 88 SYFKEEKYKDAIHFYNKSLAEHRTPDV 114
>pdb|1FJG|T Chain T, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin And Paromomycin
pdb|1J5E|T Chain T, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
pdb|1HR0|T Chain T, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1HNZ|T Chain T, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
pdb|1HNW|T Chain T, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
pdb|1HNX|T Chain T, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
pdb|1JGQ|W Chain W, The Path Of Messenger Rna Through The Ribosome. This File,
1jgq, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1GIX|W Chain W, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
pdb|1JGO|W Chain W, The Path Of Messenger Rna Through The Ribosome. This File,
1jgo, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGP|W Chain W, The Path Of Messenger Rna Through The Ribosome. This File,
1jgp, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
Length = 106
Score = 27.7 bits (60), Expect = 5.5
Identities = 23/90 (25%), Positives = 40/90 (43%), Gaps = 9/90 (10%)
Query: 132 KDSLKRNDENQ-----VDAIMKKASLLYEQGQKDEALHLFDKAASF----SQGIASHNLG 182
+ SLKR N+ + + KKA L ++G+ +EAL + KA S ++G H
Sbjct: 17 RQSLKRRLRNKAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNA 76
Query: 183 VIKFKEKDFNGALDLFDSSIASKENASVSA 212
+ K + L +++ A +SA
Sbjct: 77 AARRKSRLMRKVRQLLEAAGAPLIGGGLSA 106
>pdb|1IBL|T Chain T, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
pdb|1IBM|T Chain T, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
pdb|1IBK|T Chain T, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
Length = 106
Score = 27.7 bits (60), Expect = 5.5
Identities = 23/90 (25%), Positives = 40/90 (43%), Gaps = 9/90 (10%)
Query: 132 KDSLKRNDENQ-----VDAIMKKASLLYEQGQKDEALHLFDKAASF----SQGIASHNLG 182
+ SLKR N+ + + KKA L ++G+ +EAL + KA S ++G H
Sbjct: 17 RQSLKRRLRNKAKKSAIKTLSKKAIQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNA 76
Query: 183 VIKFKEKDFNGALDLFDSSIASKENASVSA 212
+ K + L +++ A +SA
Sbjct: 77 AARRKSRLMRKVRQLLEAAGAPLIGGGLSA 106
>pdb|1I94|T Chain T, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
pdb|1I96|T Chain T, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
pdb|1I97|T Chain T, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
pdb|1I95|T Chain T, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
Length = 105
Score = 27.7 bits (60), Expect = 5.5
Identities = 23/90 (25%), Positives = 40/90 (43%), Gaps = 9/90 (10%)
Query: 132 KDSLKRNDENQ-----VDAIMKKASLLYEQGQKDEALHLFDKAASF----SQGIASHNLG 182
+ SLKR N+ + + KKA L ++G+ +EAL + KA S ++G H
Sbjct: 16 RQSLKRRLRNKAKKSAIKTLSKKAIQLAQEGKAEEALKIMRKAESLIDKAAKGSTLHKNA 75
Query: 183 VIKFKEKDFNGALDLFDSSIASKENASVSA 212
+ K + L +++ A +SA
Sbjct: 76 AARRKSRLMRKVRQLLEAAGAPLIGGGLSA 105
>pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crystal Structure
Length = 681
Score = 27.3 bits (59), Expect = 7.2
Identities = 48/230 (20%), Positives = 94/230 (40%), Gaps = 29/230 (12%)
Query: 19 EKETPLKGIHSKIPSLKQALEQTIS--KIKSSKEFFKQILHNKKKLYIALGALLLLIVLI 76
E +PL+ + S + + L +S +IK+ E Q++ K++Y +G + L V
Sbjct: 6 ELASPLQAMSSYTAAGRNVLRWDLSPEQIKTRTE---QLIAQTKQVYDTVGTIALKEVTY 62
Query: 77 VALSLLLGHKKENKQTSLQTNTIAT--NNETPNNTNNANNTEAERQIENLDLSDLIGKDS 134
+L + + T + T+ + + + A +TEA++++ D+ + +D
Sbjct: 63 ENCLQVLA---DIEVTYIVERTMLDFPQHVSSDREVRAASTEADKKLSRFDIEMSMREDV 119
Query: 135 LKRNDENQVDAIMKKASLLYEQGQKDEALHLFDKAASFSQG----IASHNLGVIKFKEK- 189
+R Q ++K K EA +K+ + ++ H IK +K
Sbjct: 120 FQRIVHLQETCDLEKI--------KPEARRYLEKSIKMGKRNGLHLSEHIRNEIKSMKKR 171
Query: 190 ------DFNGALDLFDSSIASKENASVSAIDALVSAYHLQDEDLYYHYLK 233
DFN L+ D+S+ + + D + + DED Y LK
Sbjct: 172 MSELCIDFNKNLNEDDTSLVFSKAELGALPDDFIDSLEKTDEDKYKVTLK 221
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 26.9 bits (58), Expect = 9.4
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 79 LSLLLGHKKENKQTSLQTNTIATNNETPNNTNNANNTEAERQIENLDLSDLIGKDSLKRN 138
L +L+G + + +Q+ T NE + N+ N + +ENLDL +I + L
Sbjct: 225 LDILMGWIVKKQNRPIQSGT----NEKESKPNDKNGERKDSILENLDLKWIIA-NMLNAQ 279
Query: 139 DEN 141
D N
Sbjct: 280 DSN 282
>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|C Chain C, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2V|A Chain A, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 768
Score = 26.9 bits (58), Expect = 9.4
Identities = 36/134 (26%), Positives = 51/134 (37%), Gaps = 8/134 (5%)
Query: 448 AQKDLEGASLAFKRGRLMAIADKNALQGLKALENKRLKKALSFFDLSLKNSPNNALLHYN 507
A D E A++ R + + ++ L+ +K + D + K+ P + L N
Sbjct: 521 ASFDQEAAAVLMARIAVHKAETDDGADVIRWLDRTLIKLCQKYADYN-KDDPQSFRLAPN 579
Query: 508 TGLIYAQLENYHKAYFHFLRAFHLNSADYLSAVFAILASHFTHEDTTEFLREITENFYSQ 567
L Y Q Y+ FL F+ NS D A FT EDTT L I S
Sbjct: 580 FSL-YPQF-TYYLRRSQFLSVFN-NSPDET----AFYRHIFTREDTTNSLIMIQPTLTSF 632
Query: 568 DFSSPTQKALLSSL 581
Q LL S+
Sbjct: 633 SMEDDPQPVLLDSI 646
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.133 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,686,563
Number of Sequences: 13198
Number of extensions: 196038
Number of successful extensions: 493
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 491
Number of HSP's gapped (non-prelim): 20
length of query: 844
length of database: 2,899,336
effective HSP length: 96
effective length of query: 748
effective length of database: 1,632,328
effective search space: 1220981344
effective search space used: 1220981344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)