BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646090|ref|NP_208272.1| hypothetical protein
[Helicobacter pylori 26695]
(265 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nit... 33 0.034
pdb|4MDH|A Chain A, Cytoplasmic Malate Dehydrogenase (E.C.1... 27 2.4
pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of... 27 2.4
pdb|1J96|A Chain A, Human 3alpha-Hsd Type 3 In Ternary Comp... 27 3.1
pdb|1IHI|A Chain A, Crystal Structure Of Human Type Iii 3-A... 27 3.1
pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-T... 25 9.1
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 33.1 bits (74), Expect = 0.034
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 12/110 (10%)
Query: 143 FEAHFDEIWVQAKNQGVDVVLLSSVATFESN-ERWRLLCQMRAFCASCVVVRANRIGAYR 201
++ F E+ + + +G ++ S T + W L + RA C VV A + GA+
Sbjct: 170 YDVRFPELSLWNRKRGAQLLSFPSAFTLNTGLAHWETLLRARAIENQCYVVAAAQTGAH- 228
Query: 202 QIIVEEDQKNEFLWKFYGDSFVALPNGAIEDSLEGKMGALNAQIDKNDID 251
+ K + YG S V P GA+ ++ A+ID + +D
Sbjct: 229 ------NPKRQ----SYGHSMVVDPWGAVVAQCSERVDMCFAEIDLSYVD 268
>pdb|4MDH|A Chain A, Cytoplasmic Malate Dehydrogenase (E.C.1.1.1.37)
pdb|4MDH|B Chain B, Cytoplasmic Malate Dehydrogenase (E.C.1.1.1.37)
Length = 334
Score = 26.9 bits (58), Expect = 2.4
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 13 ENLMQSLFNSIPKKSVIVLPEYVINPFFHHNMGLDVNEISDQSARAVEFLS 63
++L+ S +I K+ ++ IN F M L E++++ A EFLS
Sbjct: 282 DDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAEEKETAFEFLS 332
>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
pdb|5MDH|B Chain B, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
Length = 333
Score = 26.9 bits (58), Expect = 2.4
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 13 ENLMQSLFNSIPKKSVIVLPEYVINPFFHHNMGLDVNEISDQSARAVEFLS 63
++L+ S +I K+ ++ IN F M L E++++ A EFLS
Sbjct: 281 DDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAEEKETAFEFLS 331
>pdb|1J96|A Chain A, Human 3alpha-Hsd Type 3 In Ternary Complex With Nadp And
Testosterone
pdb|1J96|B Chain B, Human 3alpha-Hsd Type 3 In Ternary Complex With Nadp And
Testosterone
Length = 323
Score = 26.6 bits (57), Expect = 3.1
Identities = 19/77 (24%), Positives = 35/77 (44%)
Query: 5 ALQLESFKENLMQSLFNSIPKKSVIVLPEYVINPFFHHNMGLDVNEISDQSARAVEFLSQ 64
++ + +F L++ + N K V + +P+F+ LD + D A L
Sbjct: 162 SIGVSNFNHRLLEMILNKPGLKYKPVCNQVECHPYFNQRKLLDFCKSKDIVLVAYSALGS 221
Query: 65 KCEELDLIVSAPVLLEE 81
EE + ++PVLLE+
Sbjct: 222 HREEPWVDPNSPVLLED 238
>pdb|1IHI|A Chain A, Crystal Structure Of Human Type Iii 3-Alpha-Hydroxysteroid
DehydrogenaseBILE ACID BINDING PROTEIN (AKR1C2)
COMPLEXED With Nadp+ And Ursodeoxycholate
pdb|1IHI|B Chain B, Crystal Structure Of Human Type Iii 3-Alpha-Hydroxysteroid
DehydrogenaseBILE ACID BINDING PROTEIN (AKR1C2)
COMPLEXED With Nadp+ And Ursodeoxycholate
Length = 323
Score = 26.6 bits (57), Expect = 3.1
Identities = 19/77 (24%), Positives = 35/77 (44%)
Query: 5 ALQLESFKENLMQSLFNSIPKKSVIVLPEYVINPFFHHNMGLDVNEISDQSARAVEFLSQ 64
++ + +F L++ + N K V + +P+F+ LD + D A L
Sbjct: 162 SIGVSNFNHRLLEMILNKPGLKYKPVCNQVECHPYFNQRKLLDFCKSKDIVLVAYSALGS 221
Query: 65 KCEELDLIVSAPVLLEE 81
EE + ++PVLLE+
Sbjct: 222 HREEPWVDPNSPVLLED 238
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 25.0 bits (53), Expect = 9.1
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 40 FHHNMGLDVNEISDQSARAVEFLSQKCEELDLIVSAPVLLEEHSKIYKKIALISKE 95
FH + LD E D V L ++ L+++ P ++ H K+ ++ +++KE
Sbjct: 255 FHKS--LDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKVEAQVYILTKE 308
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.137 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,492,378
Number of Sequences: 13198
Number of extensions: 57156
Number of successful extensions: 150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 145
Number of HSP's gapped (non-prelim): 6
length of query: 265
length of database: 2,899,336
effective HSP length: 87
effective length of query: 178
effective length of database: 1,751,110
effective search space: 311697580
effective search space used: 311697580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)