BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646091|ref|NP_208273.1| hypothetical protein
[Helicobacter pylori 26695]
(86 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LTD|A Chain A, Flavocytochrome B2 (E.C.1.1.2.3) Comple... 29 0.078
pdb|1LCO|A Chain A, Mol_id: 1; Molecule: L-Lactate Dehydrog... 29 0.078
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombina... 29 0.078
pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombina... 29 0.078
pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase F... 29 0.10
pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant >g... 28 0.13
pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase... 27 0.50
pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Ki... 27 0.50
pdb|1F3H|A Chain A, X-Ray Crystal Structure Of The Human An... 25 1.5
pdb|1E31|B Chain B, Survivin Dimer H. Sapiens >gi|13096773|... 25 1.5
pdb|1DD9|A Chain A, Structure Of The Dnag Catalytic Core >g... 25 1.9
pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) ... 24 2.5
pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3... 24 2.5
pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta 24 2.5
pdb|1RYP|K Chain K, Crystal Structure Of The 20s Proteasome... 24 3.3
pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta 24 3.3
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 23 4.3
pdb|1AB4| 59kda Fragment Of Gyrase A From E. Coli 23 5.6
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 23 7.3
pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean 23 7.3
pdb|1IC2|A Chain A, Deciphering The Design Of The Tropomyos... 23 7.3
pdb|1JCH|A Chain A, Crystal Structure Of Colicin E3 In Comp... 23 7.3
pdb|1HXM|A Chain A, Crystal Structure Of A Human Vgamma9VDE... 22 9.5
pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 22 9.5
pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 22 9.5
pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I... 22 9.5
pdb|1SES|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) (S... 22 9.5
pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I... 22 9.5
pdb|1A2O|A Chain A, Structural Basis For Methylesterase Che... 22 9.5
pdb|1K24|A Chain A, Crystal Structure Of The Opca Outer Mem... 22 9.5
>pdb|1LTD|A Chain A, Flavocytochrome B2 (E.C.1.1.2.3) Complexed With Sulfite
pdb|1LTD|B Chain B, Flavocytochrome B2 (E.C.1.1.2.3) Complexed With Sulfite
Length = 506
Score = 29.3 bits (64), Expect = 0.078
Identities = 17/47 (36%), Positives = 24/47 (50%)
Query: 10 KIPPKNTKNTKNAPKKSFEEHVHSLERAIDRLNDPNLSLKDGMDLYK 56
K+ NTK A KK+ E RA+ + DP+L+ KD +L K
Sbjct: 289 KLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEELKK 335
>pdb|1LCO|A Chain A, Mol_id: 1; Molecule: L-Lactate Dehydrogenase; Chain: A, B;
Synonym: Cytochrome C Oxidoreductase, Flavocytochrome
B2; Ec: 1.1.2.3; Engineered: Yes; Mutation: Tyr 143 Phe;
Heterogen: Phenyl-Pyruvate
pdb|1LDC|A Chain A, L-Lactate Dehydrogenase: Cytochrome C Oxidoreductase
(Flavocytochrome B2) (E.C.1.1.2.3) Mutant With Tyr 143
Replaced By Phe (Y143f) Complexed With Pyruvate
pdb|1LCO|B Chain B, Mol_id: 1; Molecule: L-Lactate Dehydrogenase; Chain: A, B;
Synonym: Cytochrome C Oxidoreductase, Flavocytochrome
B2; Ec: 1.1.2.3; Engineered: Yes; Mutation: Tyr 143 Phe;
Heterogen: Phenyl-Pyruvate
pdb|1LDC|B Chain B, L-Lactate Dehydrogenase: Cytochrome C Oxidoreductase
(Flavocytochrome B2) (E.C.1.1.2.3) Mutant With Tyr 143
Replaced By Phe (Y143f) Complexed With Pyruvate
Length = 511
Score = 29.3 bits (64), Expect = 0.078
Identities = 17/47 (36%), Positives = 24/47 (50%)
Query: 10 KIPPKNTKNTKNAPKKSFEEHVHSLERAIDRLNDPNLSLKDGMDLYK 56
K+ NTK A KK+ E RA+ + DP+L+ KD +L K
Sbjct: 294 KLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEELKK 340
>pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
pdb|1FCB|A Chain A, Flavocytochrome b2 (E.C.1.1.2.3)
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
pdb|1FCB|B Chain B, Flavocytochrome b2 (E.C.1.1.2.3)
Length = 511
Score = 29.3 bits (64), Expect = 0.078
Identities = 17/47 (36%), Positives = 24/47 (50%)
Query: 10 KIPPKNTKNTKNAPKKSFEEHVHSLERAIDRLNDPNLSLKDGMDLYK 56
K+ NTK A KK+ E RA+ + DP+L+ KD +L K
Sbjct: 294 KLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEELKK 340
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
Length = 412
Score = 29.3 bits (64), Expect = 0.078
Identities = 17/47 (36%), Positives = 24/47 (50%)
Query: 10 KIPPKNTKNTKNAPKKSFEEHVHSLERAIDRLNDPNLSLKDGMDLYK 56
K+ NTK A KK+ E RA+ + DP+L+ KD +L K
Sbjct: 195 KLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEELKK 241
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 28.9 bits (63), Expect = 0.10
Identities = 20/49 (40%), Positives = 26/49 (52%), Gaps = 5/49 (10%)
Query: 23 PKKSFEE--HVHSLERAIDRLNDPNLSLKDGMDLYKTAMQELFLAQKLL 69
PK +FE + H + AI LN LS ++LYK AMQ L L +L
Sbjct: 175 PKNAFEVAGYAHGIPNAIFTLN---LSAPFCVELYKDAMQSLLLHTNIL 220
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 28.5 bits (62), Expect = 0.13
Identities = 17/47 (36%), Positives = 24/47 (50%)
Query: 10 KIPPKNTKNTKNAPKKSFEEHVHSLERAIDRLNDPNLSLKDGMDLYK 56
K+ NTK A KK+ E RA+ + DP+L+ KD +L K
Sbjct: 193 KLKFSNTKAGFKAMKKTNVEESQGASRALSKFIDPSLTWKDIEELKK 239
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 26.6 bits (57), Expect = 0.50
Identities = 19/49 (38%), Positives = 25/49 (50%), Gaps = 5/49 (10%)
Query: 23 PKKSFEE--HVHSLERAIDRLNDPNLSLKDGMDLYKTAMQELFLAQKLL 69
PK + E + H + AI LN LS ++LYK AMQ L L +L
Sbjct: 175 PKNALEVAGYAHGIPNAIFTLN---LSAPFCVELYKDAMQSLLLHTNIL 220
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 26.6 bits (57), Expect = 0.50
Identities = 19/49 (38%), Positives = 25/49 (50%), Gaps = 5/49 (10%)
Query: 23 PKKSFEE--HVHSLERAIDRLNDPNLSLKDGMDLYKTAMQELFLAQKLL 69
PK + E + H + AI LN LS ++LYK AMQ L L +L
Sbjct: 175 PKNALEVAGYAHGIPNAIFTLN---LSAPFCVELYKDAMQSLLLHTNIL 220
>pdb|1F3H|A Chain A, X-Ray Crystal Structure Of The Human Anti-Apoptotic
Protein Survivin
pdb|1F3H|B Chain B, X-Ray Crystal Structure Of The Human Anti-Apoptotic
Protein Survivin
Length = 142
Score = 25.0 bits (53), Expect = 1.5
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 7 ETEKIPPKNTKNTKNAPKKSFEEHVHSLERAIDRL 41
+ E+ K K T N KK FEE + RAI++L
Sbjct: 105 DRERAKNKIAKETNNK-KKEFEETAKKVRRAIEQL 138
>pdb|1E31|B Chain B, Survivin Dimer H. Sapiens
pdb|1E31|A Chain A, Survivin Dimer H. Sapiens
Length = 142
Score = 25.0 bits (53), Expect = 1.5
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 7 ETEKIPPKNTKNTKNAPKKSFEEHVHSLERAIDRL 41
+ E+ K K T N KK FEE + RAI++L
Sbjct: 105 DRERAKNKIAKETNNK-KKEFEETAKKVRRAIEQL 138
>pdb|1DD9|A Chain A, Structure Of The Dnag Catalytic Core
pdb|1DDE|A Chain A, Structure Of The Dnag Catalytic Core
Length = 338
Score = 24.6 bits (52), Expect = 1.9
Identities = 13/45 (28%), Positives = 23/45 (50%), Gaps = 1/45 (2%)
Query: 43 DPN-LSLKDGMDLYKTAMQELFLAQKLLENAYLEHEKLQTPDQKA 86
DP+ L K+G + ++ M++ L N+ + L TPD +A
Sbjct: 250 DPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRA 294
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 24.3 bits (51), Expect = 2.5
Identities = 20/65 (30%), Positives = 25/65 (37%), Gaps = 6/65 (9%)
Query: 19 TKNAPKKSFEEHVHSLERAIDRLNDPNLSLKDGMD---LYKTAMQELFLAQKLLENAYLE 75
T A E HS D L DPN+ L +G D L+ QEL L
Sbjct: 309 TPTARLTPLEACAHSF---FDELRDPNVKLPNGRDTPALFNFTTQELSSNPPLATILIPP 365
Query: 76 HEKLQ 80
H ++Q
Sbjct: 366 HARIQ 370
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
Length = 420
Score = 24.3 bits (51), Expect = 2.5
Identities = 20/65 (30%), Positives = 25/65 (37%), Gaps = 6/65 (9%)
Query: 19 TKNAPKKSFEEHVHSLERAIDRLNDPNLSLKDGMD---LYKTAMQELFLAQKLLENAYLE 75
T A E HS D L DPN+ L +G D L+ QEL L
Sbjct: 324 TPTARLTPLEACAHSF---FDELRDPNVKLPNGRDTPALFNFTTQELSSNPPLATILIPP 380
Query: 76 HEKLQ 80
H ++Q
Sbjct: 381 HARIQ 385
>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta
Length = 352
Score = 24.3 bits (51), Expect = 2.5
Identities = 20/65 (30%), Positives = 25/65 (37%), Gaps = 6/65 (9%)
Query: 19 TKNAPKKSFEEHVHSLERAIDRLNDPNLSLKDGMD---LYKTAMQELFLAQKLLENAYLE 75
T A E HS D L DPN+ L +G D L+ QEL L
Sbjct: 290 TPTARLTPLEACAHSF---FDELRDPNVKLPNGRDTPALFNFTTQELSSNPPLATILIPP 346
Query: 76 HEKLQ 80
H ++Q
Sbjct: 347 HARIQ 351
>pdb|1RYP|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|J Chain J, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|X Chain X, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|J Chain J, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|X Chain X, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|J Chain J, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non-Covalent Proteasome Inhibitor
pdb|1JD2|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non-Covalent Proteasome Inhibitor
pdb|1FNT|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
Length = 198
Score = 23.9 bits (50), Expect = 3.3
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 38 IDRLNDPNLSLKDGMDLYKTAMQEL 62
+D P+++ ++G+DL K +QEL
Sbjct: 144 LDHHYRPDMTTEEGLDLLKLCVQEL 168
>pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta
Length = 350
Score = 23.9 bits (50), Expect = 3.3
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 19 TKNAPKKSFEEHVHSLERAIDRLNDPNLSLKDGMD---LYKTAMQEL 62
T A E HS D L DPN+ L +G D L+ QEL
Sbjct: 290 TPTARLTPLEACAHSF---FDELRDPNVKLPNGRDTPALFNFTTQEL 333
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms
Resolution In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms
Resolution In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms
Resolution In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms
Resolution In The Spermine-Induced Crystal Form
Length = 284
Score = 23.5 bits (49), Expect = 4.3
Identities = 18/73 (24%), Positives = 34/73 (45%), Gaps = 4/73 (5%)
Query: 4 ELFETEKIPPKNTKNTKNAPKKSFEEHVHSLERAIDRLNDPNLSLKDGMDLY----KTAM 59
++ + +K + + A KK+ E+ LE + L + +D +D Y K A
Sbjct: 9 QMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQ 68
Query: 60 QELFLAQKLLENA 72
++L LA+K +A
Sbjct: 69 EKLELAEKKATDA 81
>pdb|1AB4| 59kda Fragment Of Gyrase A From E. Coli
Length = 477
Score = 23.1 bits (48), Expect = 5.6
Identities = 11/37 (29%), Positives = 18/37 (47%)
Query: 43 DPNLSLKDGMDLYKTAMQELFLAQKLLENAYLEHEKL 79
+P ++DG+ + L +L + LEHEKL
Sbjct: 393 EPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKL 429
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 22.7 bits (47), Expect = 7.3
Identities = 17/55 (30%), Positives = 26/55 (46%), Gaps = 4/55 (7%)
Query: 22 APKKSFEEHVHSLERAIDRLNDPNLSLKDGMDLY----KTAMQELFLAQKLLENA 72
A KK+ E+ LE + L +D +D Y K A ++L LA+K +A
Sbjct: 27 ADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDA 81
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean
Length = 242
Score = 22.7 bits (47), Expect = 7.3
Identities = 8/22 (36%), Positives = 16/22 (72%)
Query: 38 IDRLNDPNLSLKDGMDLYKTAM 59
+D +N+P+L +D + +KTA+
Sbjct: 132 VDLINNPDLVARDAVISFKTAI 153
>pdb|1IC2|A Chain A, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|C Chain C, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|B Chain B, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|D Chain D, Deciphering The Design Of The Tropomyosin Molecule
Length = 81
Score = 22.7 bits (47), Expect = 7.3
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 22 APKKSFEEHVHSLERAIDRLNDPNLSLKDGMDLY----KTAMQELFLAQK 67
A KK+ EE LE + L +D +D Y K A ++L LA K
Sbjct: 27 ADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76
>pdb|1JCH|A Chain A, Crystal Structure Of Colicin E3 In Complex With Its
Immunity Protein
pdb|1JCH|C Chain C, Crystal Structure Of Colicin E3 In Complex With Its
Immunity Protein
Length = 551
Score = 22.7 bits (47), Expect = 7.3
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 15 NTKNTKNAPKKSFEEHVHSLERAIDRLNDPNL-SLKDGM 52
N + KN P+K F+++ H A N L LK G+
Sbjct: 445 NLNDEKNKPRKGFKDYGHDYHPAPKTENIKGLGDLKPGI 483
>pdb|1HXM|A Chain A, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|C Chain C, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|E Chain E, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
pdb|1HXM|G Chain G, Crystal Structure Of A Human Vgamma9VDELTA2 T CELL
RECEPTOR
Length = 229
Score = 22.3 bits (46), Expect = 9.5
Identities = 10/19 (52%), Positives = 13/19 (67%), Gaps = 1/19 (5%)
Query: 8 TEKIPPKNTKNTKNAPKKS 26
T+ + PK T+NTK P KS
Sbjct: 212 TDHVKPKETENTKQ-PSKS 229
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 22.3 bits (46), Expect = 9.5
Identities = 9/22 (40%), Positives = 15/22 (67%)
Query: 18 NTKNAPKKSFEEHVHSLERAID 39
N + AP K+FE+ + +L+ ID
Sbjct: 430 NHQRAPPKTFEKSMMNLQTKID 451
>pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex
Length = 592
Score = 22.3 bits (46), Expect = 9.5
Identities = 9/22 (40%), Positives = 15/22 (67%)
Query: 18 NTKNAPKKSFEEHVHSLERAID 39
N + AP K+FE+ + +L+ ID
Sbjct: 458 NHQRAPPKTFEKSMMNLQTKID 479
>pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I In Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 22.3 bits (46), Expect = 9.5
Identities = 9/22 (40%), Positives = 15/22 (67%)
Query: 18 NTKNAPKKSFEEHVHSLERAID 39
N + AP K+FE+ + +L+ ID
Sbjct: 457 NHQRAPPKTFEKSMMNLQTKID 478
>pdb|1SES|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna Ligase)
Complexed With Seryl-Hydroxamate-Amp
pdb|1SES|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna Ligase)
Complexed With Seryl-Hydroxamate-Amp
pdb|1SET|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna Ligase)
Complexed With 5'-O-[n-(L-Seryl)-Sulphamoyl]adenosine
pdb|1SET|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna Ligase)
Complexed With 5'-O-[n-(L-Seryl)-Sulphamoyl]adenosine
pdb|1SRY|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11)
pdb|1SRY|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11)
pdb|1SER|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11) Complexed With
Trna-Ser 2 (Gga Anticodon)
pdb|1SER|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) Complexed With
Trna-Ser 2 (Gga Anticodon)
Length = 421
Score = 22.3 bits (46), Expect = 9.5
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 36 RAIDRLNDPNLSLKDGMDLYKTAMQELFLAQKLLENAYLEHEKLQTP 82
RA R DP ++ L TA+ + LLEN L+ +++ P
Sbjct: 359 RANLRYRDPEGRVRYAYTLNNTALATPRILAMLLENHQLQDGRVRVP 405
>pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I In Non-Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 22.3 bits (46), Expect = 9.5
Identities = 9/22 (40%), Positives = 15/22 (67%)
Query: 18 NTKNAPKKSFEEHVHSLERAID 39
N + AP K+FE+ + +L+ ID
Sbjct: 457 NHQRAPPKTFEKSMMNLQTKID 478
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 22.3 bits (46), Expect = 9.5
Identities = 16/60 (26%), Positives = 27/60 (44%), Gaps = 1/60 (1%)
Query: 3 DELFETEKIPPKNTKNTKNAPKKSFEEHVHSLER-AIDRLNDPNLSLKDGMDLYKTAMQE 61
D L + ++ P + K E + +LE AID + P L +++GM Y + E
Sbjct: 66 DFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAE 125
>pdb|1K24|A Chain A, Crystal Structure Of The Opca Outer Membrane
AdhesinINVASIN FROM NEISSERIA MENINGITIDIS
Length = 253
Score = 22.3 bits (46), Expect = 9.5
Identities = 10/28 (35%), Positives = 18/28 (63%)
Query: 6 FETEKIPPKNTKNTKNAPKKSFEEHVHS 33
FE+ K K TK+T ++ ++S+ VH+
Sbjct: 116 FESSKDSIKTTKHTLHSSRQSWLAKVHA 143
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.309 0.128 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,641
Number of Sequences: 13198
Number of extensions: 17265
Number of successful extensions: 41
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 30
length of query: 86
length of database: 2,899,336
effective HSP length: 62
effective length of query: 24
effective length of database: 2,081,060
effective search space: 49945440
effective search space used: 49945440
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 46 (22.3 bits)