BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644779|ref|NP_206949.1| hypothetical protein
[Helicobacter pylori 26695]
(196 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BW0|B Chain B, Crystal Structure Of Tyrosine Aminotran... 27 2.1
pdb|1MHL|C Chain C, Crystal Structure Of Human Myeloperoxid... 27 2.1
pdb|1D2V|C Chain C, Crystal Structure Of Bromide-Bound Huma... 27 2.1
pdb|1F0X|A Chain A, Crystal Structure Of D-Lactate Dehydrog... 27 2.1
pdb|1CZD|A Chain A, Crystal Structure Of The Processivity C... 25 7.8
>pdb|1BW0|B Chain B, Crystal Structure Of Tyrosine Aminotransferase From
Trypanosoma Cruzi
pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From
Trypanosoma Cruzi
Length = 416
Score = 26.6 bits (57), Expect = 2.1
Identities = 29/95 (30%), Positives = 39/95 (40%), Gaps = 26/95 (27%)
Query: 45 NEVDLNFNAMLKTYENFKSNYRFLVGLKPLIKSPKTPILPYFSKGTHGDKKLQENLLNNA 104
N L FN + +N K + SPK PI+ K + GD L +NLL +A
Sbjct: 10 NHAGLVFNPIRTVSDNAKPS-----------PSPK-PII----KLSVGDPTLDKNLLTSA 53
Query: 105 LILEKSNTLYAQLQPLKPALDSPNIQVYLAFYPSP 139
AQ++ LK A+DS Y SP
Sbjct: 54 ----------AQIKKLKEAIDSQECNGYFPTVGSP 78
>pdb|1MHL|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|1MHL|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|1MYP|C Chain C, Myeloperoxidase (E.C.1.11.1.7)
pdb|1MYP|D Chain D, Myeloperoxidase (E.C.1.11.1.7)
Length = 466
Score = 26.6 bits (57), Expect = 2.1
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 54 MLKTYENFKSNYRFLVGLKPLIKSP-----KTPILPYFSKGTHGDKKLQENLLNNALILE 108
+L + F+ N R L+ L P ++ +P F G ++ E + L+L
Sbjct: 84 LLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLR 143
Query: 109 KSNTLYAQLQPLKPALDSPNI 129
+ N L +L+ L P D +
Sbjct: 144 EHNRLATELKSLNPRWDGERL 164
>pdb|1D2V|C Chain C, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D2V|D Chain D, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1CXP|C Chain C, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1CXP|D Chain D, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1DNU|C Chain C, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNU|D Chain D, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1D7W|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D7W|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1DNW|C Chain C, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|1DNW|D Chain D, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|1D5L|C Chain C, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D5L|D Chain D, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
Length = 466
Score = 26.6 bits (57), Expect = 2.1
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 54 MLKTYENFKSNYRFLVGLKPLIKSP-----KTPILPYFSKGTHGDKKLQENLLNNALILE 108
+L + F+ N R L+ L P ++ +P F G ++ E + L+L
Sbjct: 84 LLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSMHTLLLR 143
Query: 109 KSNTLYAQLQPLKPALDSPNI 129
+ N L +L+ L P D +
Sbjct: 144 EHNRLATELKSLNPRWDGERL 164
>pdb|1F0X|A Chain A, Crystal Structure Of D-Lactate Dehydrogenase, A Peripheral
Membrane Respiratory Enzyme.
pdb|1F0X|B Chain B, Crystal Structure Of D-Lactate Dehydrogenase, A Peripheral
Membrane Respiratory Enzyme
Length = 571
Score = 26.6 bits (57), Expect = 2.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 158 KFDLLESDKMGRYKILFKFVFKNKEELILEQLAFFK 193
K L DK+G K+ F F K + + +LE++ FF+
Sbjct: 323 KDTFLMIDKLGTDKMPFFFNLKGRTDAMLEKVKFFR 358
>pdb|1CZD|A Chain A, Crystal Structure Of The Processivity Clamp Gp45 From
Bacteriophage T4
pdb|1CZD|B Chain B, Crystal Structure Of The Processivity Clamp Gp45 From
Bacteriophage T4
pdb|1CZD|C Chain C, Crystal Structure Of The Processivity Clamp Gp45 From
Bacteriophage T4
Length = 228
Score = 24.6 bits (52), Expect = 7.8
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 35 KNDLVYFKGHNEVD------LNFNAMLKTYENFKSNYRFLVGLKPLIKSPKTPILPYFSK 88
K + G N+V+ + ++ L Y+ ++ + F++ + + P L ++K
Sbjct: 143 KEGKIVINGFNKVEDSALTRVKYSLTLGDYDG-ENTFNFIINMANMKMQPGNYKLLLWAK 201
Query: 89 GTHGDKKLQENLLNNALILEKSNT 112
G G K + N + LE +T
Sbjct: 202 GKQGAAKFEGEHANYVVALEADST 225
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.142 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,150,496
Number of Sequences: 13198
Number of extensions: 48981
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 5
length of query: 196
length of database: 2,899,336
effective HSP length: 83
effective length of query: 113
effective length of database: 1,803,902
effective search space: 203840926
effective search space used: 203840926
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)