BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646094|ref|NP_208276.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(190 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus >gi|1942... 28 0.87
pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pa... 26 3.3
pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complex... 25 5.7
pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complex... 25 5.7
pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida... 25 7.4
pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 >gi|77... 25 7.4
pdb|1DVO|A Chain A, The X-Ray Crystal Structure Of Fino, A ... 24 9.7
>pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus
pdb|1LGY|B Chain B, Lipase Ii From Rhizopus Niveus
pdb|1LGY|C Chain C, Lipase Ii From Rhizopus Niveus
pdb|1TIC|B Chain B, Lipase (E.C.3.1.1.3) (Triacylglycerol Acylhydrolase)
pdb|1TIC|A Chain A, Lipase (E.C.3.1.1.3) (Triacylglycerol Acylhydrolase)
Length = 269
Score = 27.7 bits (60), Expect = 0.87
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 71 SSGMPMLSVLRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKSALLCVENAQKEDALKDF 130
S+G+P + + D++ V + FG GV +K+ + +C + +D
Sbjct: 191 STGIPFQRTVHKRDIVPH--VPPQSFGFLHPGVESWIKSGTSNVQICTSEIETKDCSNSI 248
Query: 131 VELETLSAHYSYKELD 146
V ++ H SY +++
Sbjct: 249 VPFTSILDHLSYFDIN 264
>pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pasteurianum
pdb|1C4A|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
pdb|1C4C|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
Length = 574
Score = 25.8 bits (55), Expect = 3.3
Identities = 23/94 (24%), Positives = 38/94 (39%), Gaps = 21/94 (22%)
Query: 98 GTLLGV-GGLMKAYAKSALLCVENAQKEDALKDFVELETLSAHYSYKELDALQREIKKFS 156
G + G GG+M+A +SA ENA+ ED YK++ L
Sbjct: 414 GAIFGATGGVMEAALRSAKDFAENAELED--------------IEYKQVRGLN------G 453
Query: 157 LQLSKKNFSNQSVEVEISGTRENLQAFLQQNKIN 190
++ ++ +N V + NL F++ IN
Sbjct: 454 IKEAEVEINNNKYNVAVINGASNLFKFMKSGMIN 487
>pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVD|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVG|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
pdb|1JVG|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
Length = 522
Score = 25.0 bits (53), Expect = 5.7
Identities = 17/63 (26%), Positives = 27/63 (41%)
Query: 116 LCVENAQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISG 175
L + A +E L+ + ELE Y EL A+ E F Q + + F+ S + +
Sbjct: 8 LTLSKAGQEHLLRFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSHQKNVDA 67
Query: 176 TRE 178
E
Sbjct: 68 RME 70
>pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV1|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV3|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
pdb|1JV3|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
Length = 505
Score = 25.0 bits (53), Expect = 5.7
Identities = 17/63 (26%), Positives = 27/63 (41%)
Query: 116 LCVENAQKEDALKDFVELETLSAHYSYKELDALQREIKKFSLQLSKKNFSNQSVEVEISG 175
L + A +E L+ + ELE Y EL A+ E F Q + + F+ S + +
Sbjct: 8 LTLSKAGQEHLLRFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSHQKNVDA 67
Query: 176 TRE 178
E
Sbjct: 68 RME 70
>pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase E1b)
Length = 338
Score = 24.6 bits (52), Expect = 7.4
Identities = 13/34 (38%), Positives = 16/34 (46%)
Query: 80 LRREDLINIGLVSVRYFGGTLLGVGGLMKAYAKS 113
L R+D + + V YFGG GL Y KS
Sbjct: 19 LERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKS 52
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 24.6 bits (52), Expect = 7.4
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 28/100 (28%)
Query: 20 LGYLMPFDDFEKTLLQLKKEHFKAAHFVTAFRYSLEGKITEGFSDDGEPKGSSGMPMLSV 79
L + M D EKT Q +KEH I E PK S G+
Sbjct: 144 LRFSMALCDQEKTFRQQRKEH-----------------IRESMKKLLGPKNSEGL----- 181
Query: 80 LRREDLINIGLVSVRYFGG---TLLGVGGLMKAYAKSALL 116
++ +V++ GG ++G G+MKA +S +L
Sbjct: 182 ---HSARDVPVVAILGSGGGFRAMVGFSGVMKALYESGIL 218
>pdb|1DVO|A Chain A, The X-Ray Crystal Structure Of Fino, A Repressor Of
Bacterial Conjugation
Length = 152
Score = 24.3 bits (51), Expect = 9.7
Identities = 17/57 (29%), Positives = 26/57 (44%), Gaps = 3/57 (5%)
Query: 37 KKEHFKAAHFVTAFRYSLEGKITEGFSDDGEPKGSSGMPMLSVLRREDLINIGLVSV 93
+ E + A A RY EG +TE S + E + L +RR++ I L +V
Sbjct: 97 RSESYLCAMKAGACRYDTEGYVTEHISQEEEVYAAE---RLDKIRRQNRIKAELQAV 150
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.134 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 969,498
Number of Sequences: 13198
Number of extensions: 37450
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 7
length of query: 190
length of database: 2,899,336
effective HSP length: 83
effective length of query: 107
effective length of database: 1,803,902
effective search space: 193017514
effective search space used: 193017514
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)