BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646096|ref|NP_208278.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
         (365 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1JJE|B  Chain B, Imp-1 Metallo Beta-Lactamase From Pseud...    27  2.8
pdb|1JJT|A  Chain A, Imp-1 Metallo Beta-Lactamase From Pseud...    27  2.8
pdb|1DDK|A  Chain A, Crystal Structure Of Imp-1 Metallo Beta...    27  2.8
pdb|1MUH|A  Chain A, Crystal Structure Of Tn5 Transposase Co...    27  4.8
pdb|1RYP|C  Chain C, Crystal Structure Of The 20s Proteasome...    27  4.8
pdb|1B7E|A  Chain A, Transposase Inhibitor                         27  4.8
pdb|1FNT|C  Chain C, Crystal Structure Of The 20s Proteasome...    27  4.8

>pdb|1JJE|B Chain B, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
           In Complex With A Biaryl Succinic Acid Inhibitor (11)
 pdb|1JJE|A Chain A, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
           In Complex With A Biaryl Succinic Acid Inhibitor (11)
          Length = 222

 Score = 27.3 bits (59), Expect = 2.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 5   ISAWVLQDKFLFIVCFILPFCLGVLG 30
           +  W+ + K LF  CFI P+ LG LG
Sbjct: 144 VVVWLPERKILFGGCFIKPYGLGNLG 169



>pdb|1JJT|A Chain A, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
           In Complex With A Biaryl Succinic Acid Inhibitor (1)
 pdb|1JJT|B Chain B, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
           In Complex With A Biaryl Succinic Acid Inhibitor (1)
 pdb|1DD6|B Chain B, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
           In Complex With A Mercaptocarboxylate Inhibitor
 pdb|1DD6|A Chain A, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
           In Complex With A Mercaptocarboxylate Inhibitor
          Length = 228

 Score = 27.3 bits (59), Expect = 2.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 5   ISAWVLQDKFLFIVCFILPFCLGVLG 30
           +  W+ + K LF  CFI P+ LG LG
Sbjct: 144 VVVWLPERKILFGGCFIKPYGLGNLG 169



>pdb|1DDK|A Chain A, Crystal Structure Of Imp-1 Metallo Beta-Lactamase From
           Pseudomonas Aeruginosa
          Length = 220

 Score = 27.3 bits (59), Expect = 2.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 5   ISAWVLQDKFLFIVCFILPFCLGVLG 30
           +  W+ + K LF  CFI P+ LG LG
Sbjct: 143 VVVWLPERKILFGGCFIKPYGLGNLG 168



>pdb|1MUH|A Chain A, Crystal Structure Of Tn5 Transposase Complexed With
           Transposon End Dna
          Length = 481

 Score = 26.6 bits (57), Expect = 4.8
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 9/63 (14%)

Query: 27  GVLGTQIFKQEIPRQLPIVVVDLDKTTTSHQVAFELGATSALQIK------HQVASLLEA 80
           G + T    QE P  L I   D    +  HQVA ELG   ++Q K      H V  LLEA
Sbjct: 82  GAMQTVKLAQEFPELLAIE--DTTSLSYRHQVAEELGKLGSIQDKSRGWWVHSVL-LLEA 138

Query: 81  KRF 83
             F
Sbjct: 139 TTF 141



>pdb|1RYP|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
           Angstroms Resolution
 pdb|1RYP|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
           Angstroms Resolution
 pdb|1G65|B Chain B, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
           Molecular Basis For Selectivity Of
           Alpha,Beta-Epoxyketone Proteasome Inhibitors
 pdb|1G65|P Chain P, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
           Molecular Basis For Selectivity Of
           Alpha,Beta-Epoxyketone Proteasome Inhibitors
 pdb|1JD2|B Chain B, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
           Complex: A Non-Covalent Proteasome Inhibitor
 pdb|1JD2|W Chain W, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
           Complex: A Non-Covalent Proteasome Inhibitor
          Length = 244

 Score = 26.6 bits (57), Expect = 4.8
 Identities = 14/54 (25%), Positives = 25/54 (45%)

Query: 127 KNAFLQTALTLDAKTLATKALVRDSNLISAKAQAMPIVLQLHALYNEENNYTQY 180
           K A     LT DA+ L   A +   N +    + +P+ + +  L + +  YTQ+
Sbjct: 71  KIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQH 124



>pdb|1B7E|A Chain A, Transposase Inhibitor
          Length = 420

 Score = 26.6 bits (57), Expect = 4.8
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 9/63 (14%)

Query: 27 GVLGTQIFKQEIPRQLPIVVVDLDKTTTSHQVAFELGATSALQIK------HQVASLLEA 80
          G + T    QE P  L I   D    +  HQVA ELG   ++Q K      H V  LLEA
Sbjct: 23 GAMQTVKLAQEFPELLAIE--DTTSLSYRHQVAEELGKLGSIQDKSRGWWVHSVL-LLEA 79

Query: 81 KRF 83
            F
Sbjct: 80 TTF 82



>pdb|1FNT|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
           Complex With The Proteasome Activator Pa26 From
           Trypanosome Brucei At 3.2 Angstroms Resolution
 pdb|1FNT|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
           Complex With The Proteasome Activator Pa26 From
           Trypanosome Brucei At 3.2 Angstroms Resolution
 pdb|1G0U|B Chain B, A Gated Channel Into The Proteasome Core Particle
 pdb|1G0U|P Chain P, A Gated Channel Into The Proteasome Core Particle
          Length = 245

 Score = 26.6 bits (57), Expect = 4.8
 Identities = 14/54 (25%), Positives = 25/54 (45%)

Query: 127 KNAFLQTALTLDAKTLATKALVRDSNLISAKAQAMPIVLQLHALYNEENNYTQY 180
           K A     LT DA+ L   A +   N +    + +P+ + +  L + +  YTQ+
Sbjct: 72  KIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQH 125



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.330    0.142    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,806,174
Number of Sequences: 13198
Number of extensions: 64540
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 128
Number of HSP's gapped (non-prelim): 7
length of query: 365
length of database: 2,899,336
effective HSP length: 89
effective length of query: 276
effective length of database: 1,724,714
effective search space: 476021064
effective search space used: 476021064
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)