BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646097|ref|NP_208279.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
         (329 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1IYU|    Lipoyl Domain Of Pyruvate Dehydrogenase Complex...    29  0.64
pdb|1JQ4|A  Chain A, [2fe-2s] Domain Of Methane Monooxygenas...    28  1.4
pdb|1BVU|A  Chain A, Glutamate Dehydrogenase From Thermococc...    27  3.2
pdb|1DLC|    Delta-Endotoxin Cryiiia (Bt13)                        26  7.1

>pdb|1IYU|   Lipoyl Domain Of Pyruvate Dehydrogenase Complex, Nmr, Minimized
          Average Structure
 pdb|1IYV|   Lipoyl Domain Of Pyruvate Dehydrogenase Complex, Nmr, 29
          Structures
          Length = 79

 Score = 29.3 bits (64), Expect = 0.64
 Identities = 16/46 (34%), Positives = 24/46 (51%), Gaps = 4/46 (8%)

Query: 36 EVLQGFLEAREYSVSSKVP----GRIEKVFVKKGDHIKKGDLVFSI 77
          EV QG +       S +VP    G ++ V VK GD +K+GD +  +
Sbjct: 27 EVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIEL 72



>pdb|1JQ4|A Chain A, [2fe-2s] Domain Of Methane Monooxygenase Reductase From
           Methylococcus Capsulatus (Bath)
          Length = 98

 Score = 28.1 bits (61), Expect = 1.4
 Identities = 14/31 (45%), Positives = 18/31 (57%)

Query: 285 GDFATWKATNNSNTYDMKSYEVEAIPLEELE 315
           G  AT KA  +   YD+K   V+A+P EE E
Sbjct: 45  GGCATCKALCSEGDYDLKGCSVQALPPEEEE 75



>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis
 pdb|1BVU|B Chain B, Glutamate Dehydrogenase From Thermococcus Litoralis
 pdb|1BVU|C Chain C, Glutamate Dehydrogenase From Thermococcus Litoralis
 pdb|1BVU|D Chain D, Glutamate Dehydrogenase From Thermococcus Litoralis
 pdb|1BVU|E Chain E, Glutamate Dehydrogenase From Thermococcus Litoralis
 pdb|1BVU|F Chain F, Glutamate Dehydrogenase From Thermococcus Litoralis
          Length = 418

 Score = 26.9 bits (58), Expect = 3.2
 Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 16/131 (12%)

Query: 43  EAREYSVSSKVPGRIEKVFVKKG-DHIKK---GDLVFSISSPELEAKLAQAEAGHKAAKA 98
           E  E  V    P  IE+V  KK  D+IK     +L    ++PE +  L +     K    
Sbjct: 282 ELLELEVDVLAPSAIEEVITKKNADNIKAKIVAELANGPTTPEADEILYE-----KGILI 336

Query: 99  LSDEVKRGSR------DETINSARDVWQAAKSQATLAKETYKRVQDLYD-NGVASLQKRD 151
           + D +           +   N   D W   +++A L K+  K   D+Y+ +   ++  RD
Sbjct: 337 IPDFLCNAGGVTVSYFEWVQNITGDYWTVEETRAKLDKKMTKAFWDVYNTHKEKNINMRD 396

Query: 152 EAYAAYESTKY 162
            AY    S  Y
Sbjct: 397 AAYVVAVSRVY 407



>pdb|1DLC|   Delta-Endotoxin Cryiiia (Bt13)
          Length = 584

 Score = 25.8 bits (55), Expect = 7.1
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 49  VSSKVP---GRIEKVFVKKGDHIKKGDLVFSISSPELEAKLAQAEAGHKAAKALSDEVKR 105
           VSS+ P   GRI ++F +   H +     F+IS  E+      A+A +     L D    
Sbjct: 95  VSSRNPHSQGRIRELFSQAESHFRNSMPSFAISGYEVLFLTTYAQAANTHLFLLKDAQIY 154

Query: 106 GSRDETINSARDVWQAAKSQATLAKETYKRVQDLYDNGVASLQ 148
           G  +E      D+ +  K Q  L +E        Y+ G+  L+
Sbjct: 155 G--EEWGYEKEDIAEFYKRQLKLTQEYTDHCVKWYNVGLDKLR 195



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.311    0.129    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,820,338
Number of Sequences: 13198
Number of extensions: 72760
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 133
Number of HSP's gapped (non-prelim): 4
length of query: 329
length of database: 2,899,336
effective HSP length: 89
effective length of query: 240
effective length of database: 1,724,714
effective search space: 413931360
effective search space used: 413931360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)