BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646099|ref|NP_208281.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(449 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1M6N|A Chain A, Crystal Structure Of The Seca Transloca... 30 0.72
pdb|1E9Z|B Chain B, Crystal Structure Of Helicobacter Pylor... 27 6.1
pdb|1BHE| Polygalacturonase From Erwinia Carotovora Ssp. ... 27 6.1
pdb|1E9Y|B Chain B, Crystal Structure Of Helicobacter Pylor... 27 6.1
pdb|1A5Z| Lactate Dehydrogenase From Thermotoga Maritima ... 26 8.0
>pdb|1M6N|A Chain A, Crystal Structure Of The Seca Translocation Atpase From
Bacillus Subtilis
pdb|1M74|A Chain A, Crystal Structure Of Mg-Adp-Bound Seca From Bacillus
Subtilis
Length = 802
Score = 29.6 bits (65), Expect = 0.72
Identities = 31/155 (20%), Positives = 67/155 (43%), Gaps = 15/155 (9%)
Query: 297 QIVRKMIIVPESASISQILIKMKKEQIHTALVIDEYGGTAGLLTMED--IIEEIMGEISD 354
Q+V++ + + ILI ++ T L+I + L ++ + + E
Sbjct: 195 QMVQRPLHFAVIDEVDSILI----DEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDY 250
Query: 355 EYDLKQEGINKLEEGVFELEGMLDLESVEEALHIEFDKECEQVTLGGYVFSLLERMPMEG 414
YD+K + + EEG+ + E ++++ + H+ + Q L +V M +
Sbjct: 251 TYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQ-ALKAHV-----AMQKDV 304
Query: 415 DTIVSHGYSFEVLSVDGARIKRLKAVKQDQGENEA 449
D +V G +V+ VD + +K + +G ++A
Sbjct: 305 DYVVEDG---QVVIVDSFTGRLMKGRRYSEGLHQA 336
>pdb|1E9Z|B Chain B, Crystal Structure Of Helicobacter Pylori Urease
Length = 569
Score = 26.6 bits (57), Expect = 6.1
Identities = 14/26 (53%), Positives = 17/26 (64%)
Query: 187 EHDGTHSEEELKIIVGESLREGIIDS 212
EHD T EELK G++LREG+ S
Sbjct: 33 EHDYTIYGEELKFGGGKTLREGMSQS 58
>pdb|1BHE| Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 26.6 bits (57), Expect = 6.1
Identities = 16/50 (32%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 209 IIDSV-EGEIIKNAXDFSDTSAKEIMTPRKDMVCLDEENSYEENIDIVLK 257
+ID+V E + N D+SD + K++ + K +V L+ EN+ ++ I++ +K
Sbjct: 309 VIDTVYEKKEGSNVPDWSDITFKDVTSETKGVVVLNGENA-KKPIEVTMK 357
>pdb|1E9Y|B Chain B, Crystal Structure Of Helicobacter Pylori Urease In Complex
With Acetohydroxamic Acid
Length = 569
Score = 26.6 bits (57), Expect = 6.1
Identities = 14/26 (53%), Positives = 17/26 (64%)
Query: 187 EHDGTHSEEELKIIVGESLREGIIDS 212
EHD T EELK G++LREG+ S
Sbjct: 33 EHDYTIYGEELKFGGGKTLREGMSQS 58
>pdb|1A5Z| Lactate Dehydrogenase From Thermotoga Maritima (Tmldh)
Length = 319
Score = 26.2 bits (56), Expect = 8.0
Identities = 15/58 (25%), Positives = 31/58 (52%), Gaps = 4/58 (6%)
Query: 134 EIVPKSLAIAKSEKATLFAARPLHVFWVVFYPVVRLFDVIAHFFLKKMGINPKEHDGT 191
+++ ++ + K + P + VV PV DV+ +FFLK+ G++P++ G+
Sbjct: 87 QLLGRNARVMKEIARNVSKYAPDSIVIVVTNPV----DVLTYFFLKESGMDPRKVFGS 140
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.138 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,359,940
Number of Sequences: 13198
Number of extensions: 92781
Number of successful extensions: 274
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 5
length of query: 449
length of database: 2,899,336
effective HSP length: 91
effective length of query: 358
effective length of database: 1,698,318
effective search space: 607997844
effective search space used: 607997844
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)