BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646100|ref|NP_208282.1| phosphate permease
[Helicobacter pylori 26695]
         (533 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1YCQ|A  Chain A, Xenopus Laevis Mdm2 Bound To The Transa...    26  9.7
pdb|1JNY|A  Chain A, Crystal Structure Of Sulfolobus Solfata...    26  9.7
pdb|1JR1|A  Chain A, Crystal Structure Of Inosine Monophosph...    26  9.7

>pdb|1YCQ|A Chain A, Xenopus Laevis Mdm2 Bound To The Transactivation Domain Of
           Human P53
          Length = 107

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 405 VGAVFGVGFLRERLREQSRRRFARIRDNIVAAHFGEDLEEIEG 447
           +G +FGV   +E   ++ RR +A I  N+V+A+  E  E+I G
Sbjct: 66  LGELFGV---QEFSVKEPRRLYAMISRNLVSANVKESSEDIFG 105



>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
          Factor 1 Alpha In Complex With Gdp
 pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
          Factor 1 Alpha In Complex With Gdp
          Length = 435

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 4  KNIKEFEKASKKLQKDTLKIALAL 27
          K +KE E+A+KKL K++ K A  L
Sbjct: 36 KTVKEAEEAAKKLGKESEKFAFLL 59



>pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase
           In Complex With Mycophenolic Acid
 pdb|1JR1|B Chain B, Crystal Structure Of Inosine Monophosphate Dehydrogenase
           In Complex With Mycophenolic Acid
          Length = 514

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 14/103 (13%)

Query: 395 GLPVSSTHIVVGAVFGV------GFLRERLREQSRRRFARIRDNIVAAHFGEDLEEIEGF 448
           G+P++ T  +   + G+       FL+E   ++        R+++V A  G  L+E    
Sbjct: 141 GIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPAGITLKEANEI 200

Query: 449 LERFDKANLKEKS--------LMLESLKKSKNTAIALELKKKE 483
           L+R  K  L   +        +    LKK+++  +A +  KK+
Sbjct: 201 LQRSKKGKLPIVNENDELVAIIARTDLKKNRDYPLASKDAKKQ 243



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.324    0.139    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,574,395
Number of Sequences: 13198
Number of extensions: 96827
Number of successful extensions: 315
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 314
Number of HSP's gapped (non-prelim): 3
length of query: 533
length of database: 2,899,336
effective HSP length: 93
effective length of query: 440
effective length of database: 1,671,922
effective search space: 735645680
effective search space used: 735645680
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.2 bits)