BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646101|ref|NP_208283.1| conserved hypothetical
nifU-like protein [Helicobacter pylori 26695]
(89 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1RGS| Regulatory Subunit Of Camp Dependent Protein Ki... 24 3.2
pdb|1QU1|F Chain F, Crystal Structure Of Eha2 (23-185) >gi|... 23 4.2
pdb|1H54|B Chain B, Maltose Phosphorylase From Lactobacillu... 23 5.5
pdb|3YPI|A Chain A, Electrophilic Catalysis In Triosephosph... 23 7.1
pdb|7TIM|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1)... 23 7.1
pdb|1I45|A Chain A, Yeast Triosephosphate Isomerase (Mutant... 23 7.1
>pdb|1RGS| Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 23.9 bits (50), Expect = 3.2
Identities = 13/43 (30%), Positives = 22/43 (50%), Gaps = 1/43 (2%)
Query: 7 EDLQKPVRIVI-EKIRPYLLKDGGNIEVLGVKSMKIYVALEGA 48
E L K R+ + + + P +DG I V G + ++ LEG+
Sbjct: 164 ESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGS 206
>pdb|1QU1|F Chain F, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|C Chain C, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|D Chain D, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|E Chain E, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|B Chain B, Crystal Structure Of Eha2 (23-185)
pdb|1QU1|A Chain A, Crystal Structure Of Eha2 (23-185)
Length = 155
Score = 23.5 bits (49), Expect = 4.2
Identities = 16/48 (33%), Positives = 24/48 (49%), Gaps = 7/48 (14%)
Query: 2 IEFSDEDLQKPVRIVIEKIRPYLLKDGGNIEVLGVKSMKIYVALEGAC 49
I+ +D ++ K + EK R L + N E +G S KIY + AC
Sbjct: 78 IDLTDSEMNK----LFEKTRRQLRE---NAEEMGNGSFKIYHKCDNAC 118
>pdb|1H54|B Chain B, Maltose Phosphorylase From Lactobacillus Brevis
pdb|1H54|A Chain A, Maltose Phosphorylase From Lactobacillus Brevis
Length = 754
Score = 23.1 bits (48), Expect = 5.5
Identities = 7/36 (19%), Positives = 21/36 (57%)
Query: 53 SSSKITLKNVIERQLKMDIHPNLEVVCLENAKEFDK 88
S K+T+KN+ + ++ + + P+++ + +D+
Sbjct: 149 SVQKVTVKNLSDAEVDVTLKPSIDADVMNEEANYDE 184
>pdb|3YPI|A Chain A, Electrophilic Catalysis In Triosephosphase Isomerase:
The Role Of Histidine-95
pdb|3YPI|B Chain B, Electrophilic Catalysis In Triosephosphase Isomerase:
The Role Of Histidine-95
Length = 247
Score = 22.7 bits (47), Expect = 7.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 53 SSSKITLKNVIERQLKMDIHPNLEVVCLENAKEFD 87
+ SK ++K ++ER I N+EVV A D
Sbjct: 13 NGSKQSIKEIVERLNTASIPENVEVVICPPATYLD 47
>pdb|7TIM|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1) Complex With
Phosphoglycolohydroxamate
pdb|7TIM|B Chain B, Triosephosphate Isomerase (E.C.5.3.1.1) Complex With
Phosphoglycolohydroxamate
pdb|1YPI|A Chain A, Structure Of Yeast Triosephosphate Isomerase At 1.9
Angstroms Resolution
pdb|1YPI|B Chain B, Structure Of Yeast Triosephosphate Isomerase At 1.9
Angstroms Resolution
pdb|2YPI|A Chain A, Crystallographic Analysis Of The Complex Between
Triosephosphate Isomerase And 2-Phosphoglycolate At 2.5
pdb|2YPI|B Chain B, Crystallographic Analysis Of The Complex Between
Triosephosphate Isomerase And 2-Phosphoglycolate At 2.5
Length = 247
Score = 22.7 bits (47), Expect = 7.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 53 SSSKITLKNVIERQLKMDIHPNLEVVCLENAKEFD 87
+ SK ++K ++ER I N+EVV A D
Sbjct: 13 NGSKQSIKEIVERLNTASIPENVEVVICPPATYLD 47
>pdb|1I45|A Chain A, Yeast Triosephosphate Isomerase (Mutant)
pdb|1I45|B Chain B, Yeast Triosephosphate Isomerase (Mutant)
Length = 248
Score = 22.7 bits (47), Expect = 7.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 53 SSSKITLKNVIERQLKMDIHPNLEVVCLENAKEFD 87
+ SK ++K ++ER I N+EVV A D
Sbjct: 14 NGSKQSIKEIVERLNTASIPENVEVVICPPATYLD 48
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.139 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,720
Number of Sequences: 13198
Number of extensions: 13677
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 6
length of query: 89
length of database: 2,899,336
effective HSP length: 65
effective length of query: 24
effective length of database: 2,041,466
effective search space: 48995184
effective search space used: 48995184
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)