BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644780|ref|NP_206950.1| conserved hypothetical
membrane protein [Helicobacter pylori 26695]
         (270 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1KV8|A  Chain A, Crystal Structure Of 3-Keto-L-Gulonate ...    28  0.85
pdb|1DX4|A  Chain A, Ache From Drosophila Melanogaster Compl...    26  5.5

>pdb|1KV8|A Chain A, Crystal Structure Of 3-Keto-L-Gulonate 6-Phosphate
          Decarboxylase
 pdb|1KW1|A Chain A, Crystal Structure Of 3-Keto-L-Gulonate 6-Phosphate
          Decarboxylase With Bound L-Gulonate 6-Phosphate
 pdb|1KW1|B Chain B, Crystal Structure Of 3-Keto-L-Gulonate 6-Phosphate
          Decarboxylase With Bound L-Gulonate 6-Phosphate
 pdb|1KV8|B Chain B, Crystal Structure Of 3-Keto-L-Gulonate 6-Phosphate
          Decarboxylase
          Length = 216

 Score = 28.5 bits (62), Expect = 0.85
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 40 ITLTILAVCFSSQ---SAEETTMLTLSYTLFFVLGAFLLVAISVGAIKNLNALFSKRGVL 96
          ++L +L V   +Q   SA ETT L         +G  L V   V A+++L AL+  + VL
Sbjct: 1  MSLPMLQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKALYPHKIVL 60

Query: 97 S 97
          +
Sbjct: 61 A 61



>pdb|1DX4|A Chain A, Ache From Drosophila Melanogaster Complex With Tacrine
           Derivative
           9-(3-Phenylmethylamino)-1,2,3,4-Tetrahydroacridine
 pdb|1QON|A Chain A, Ache From Drosophila Melanogaster Complex With Tacrine
           Derivative
           9-(3-Iodobenzylamino)-1,2,3,4-Tetrahydroacridine
 pdb|1QO9|A Chain A, Native Acetylcholinesterase From Drosophila Melanogaster
          Length = 586

 Score = 25.8 bits (55), Expect = 5.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 8   YPNGYNKAMGFLKVFKHDALGQVGNVVVGNF 38
           Y  G+      L ++  D +  VGNV+V +F
Sbjct: 148 YGGGFMTGSATLDIYNADIMAAVGNVIVASF 178



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.331    0.146    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,233,471
Number of Sequences: 13198
Number of extensions: 40288
Number of successful extensions: 145
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 2
length of query: 270
length of database: 2,899,336
effective HSP length: 87
effective length of query: 183
effective length of database: 1,751,110
effective search space: 320453130
effective search space used: 320453130
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (25.0 bits)